Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003041

Physical Location & Seq

Genomic Coordinates Reverse (-)

59987173 .. 59992995

Gene Structure 5823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG340400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1854 bp

ATGGCCCCAACTCAGGAAAAAGCGACGCCTCCATGTTGCCCGAGCCCTCCACCTCTATCCTCCAAACCCATTCTCCAGCTTCGAACCGCCTCCTCCGATCCGGCCCAGGATCCGATCTCAACCCGACCCTCCGTCCCGCCGCCCCTCATCCGACCCCTCGACACCACCTCAGCCAACACCGCTGCCGCCAAAGGCCTCCCAGTCATGTTGAGGGCTCAATCCAGCCATCCCTTGGAGCCTTTATCTGCCGCTGAAATCTCGGTAGCCGTGGCCACTGTCAGGGCAGCTGGAGCAACCCCTGAGGTGAGGGATAGTATGCGCTTTGTTGAAGTAGCTTTGGTAGAACCAGATAAGCGTGTTGTTGCATTGGCAGATGCGTATTTCTTCCCTCCTTTCCAGCCATCATTGCTTCCCAGAACAAAAGGAGGACCTATGATTCCTAGTAAACTTCCTCCGAGGCAAGCGAGGCTTGTAGTTTATAACAAAAAGTCAAATGAGACGAGTGTTTGGGTTGTTGAGCTATCGGAAGTTCATGCTGCAACTCGAGGTGGTCACCATAGGGGTAAAGTCATCTCATCCAAAGTTGTTCCAGATGTTCAGCCTCCCATGGATGCTATGGAATATGCTGAATGTGAAGCTGTTGTAAAGGACTATCCTCTGTTTCGGGATGCAATGAAGAAGAGGGGTATTGAAGATTTGGACCTCGTAATGGTGGATCCATGGTGCGCAGGATATCACAGTGAGGCTGATGCTCCTAGCCGCAGGCTTGCTAAACCACTTATCTTCTGTAGAACTGAGAGTGATTGCCCTATGGAAAATGGTTATGCACGTCCAGTGGAAGGAATCCATGTACTAGTTGATATGCAAAATATGGTTGTTCTGGAGTTTGAAGACCGTAAACTTGTTCCCCTGCCTCCTGCTGATCCTTTGAGAAATTATACTCCTGGTGAAACACGAGGAGGTGTTGATCGAAGTGATGTGAAACCCCTAAAGATAGTTCAGCCTGAAGGGCCAAGTTTTCGTGTTAATGGGCACTTTGTTGAATGGCAGAAGTGGAATTTCCGTATTGGCTTTACTTCGAGGGAAGGTTTGGTTATCTACTCTGTTGCTTATATTGACGGTAGTCGAGGCCGGAGGCCTGTGGCCCACAGGTTAAGTTTTGTTGAGATGGTGGTTCCTTATGGAGATCCAAATGATCCCCACTACAGGAAAAATGCATTTGATGCTGGGGAAGATGGGCTGGGTAAAAATGCACATTCTCTTAAAAAGGGTTGTGATTGTTTAGGTTATATCAAGTACTTTGATGCACACTTTACAAATTTCACTGGGGGTGTTGAAACAATTGAGAATTGTGTTTGCTTGCATGAGGAGGATCATGGAATATTATGGAAGCATCAGGATTGGAGAACAGGTTTAGCAGAAGTTCGACGGTCTAGAAGGCTGACAGTGTCTTTTATCTGTACAGTAGCTAACTATGAGTACGGATTTTACTGGCATTTTTATCAGGATGGGAAAATTGAAGCTGAGGTGAGACTTACAGGAATTCTAAGCTTAGGTGCGCTTCAACCAGGAGAAACCCGAAAGTATGGTACAACTATTGCACCTGGACTATATGCTCCTGTACATCAACACTTTTTTGTTGCTCGTATGGACATGGCAGTTGATAGTAAGCCTGGTGAAACTTTTAATCAGGTGGTTGAAGTAAATGTTAAAGTTGAAGAACCAGGAAAGAACAATGTTCATAACAATGCATTCTATGCTGAGGAGAAACTTCTGAAATCAGAATTGCAAGCAATGCGTGATTGTAATCCTTTATCTGCTCGCCATTGGATTGTAAGACAGAATGCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

617

Amino Acids

68.73

Weight (kDa)

7.03

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN3	PF02728	201 - 304	1.2e-27	Copper amine oxidase, N3 domain
Cu_amine_oxid	PF01179	330 - 613	3.9e-107	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42490
fragaria_vesca	FvH4_2g01360 FvH4_2g01360 FvH4_2g01360 FvH4_4g25490 FvH4_4g25490 FvH4_4g25490 FvH4_4g25490 FvH4_5g06090 FvH4_5g06090 FvH4_5g06090 FvH4_5g06090
malus_domestica	MD06G1166900.v1.1 MD13G1102300.v1.1 MD14G1172500.v1.1
prunus_persica	Prupe.1G243500_v2.0.a1 Prupe.5G166700_v2.0.a1 Prupe.5G166700_v2.0.a1 Prupe.5G166700_v2.0.a1
pyrus_communis	pycom13g08940 pycom14g14400
rosa_chinensis	RchiOBHm_Chr4g0432841 RchiOBHm_Chr7g0192721
rosa_laevigata	RLG00000004334 RLG00000006809
rosa_multiflora	Rmu_sc0002040.1_g000015 Rmu_sc0005234.1_g000004
rosa_roxburghii	Rroxscaffold_3G00262720 Rroxscaffold_5G00374260
rosa_rugosa	Rorug04G0263100 Rorug07G0004200
rosa_samantha	Rh4AG317300 Rh4BG325500 Rh4CG340400 Rh4DG320700 Rh7DG131400
rosa_wichuraiana	Rw4G027600 Rw7G011050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	480
Acc16I	TGCGCA	1 cut(s)	727
AccB7I	CCANNNNNTGG	1 cut(s)	232
AciI	CCGC	7 cut(s)	87, 137, 140, 180, 186, 249, 760
AclWI	GGATC	9 cut(s)	92, 104, 117, 710, 723, 917, 1181, 1190, 1380
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	3 cut(s)	1057, 1318, 1542
AcuI	CTGAAG	1 cut(s)	1026
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	6 cut(s)	852, 1298, 1462, 1481, 1591, 1623
AfiI	CCNNNNNNNGG	6 cut(s)	13, 232, 279, 709, 839, 1206
AgsI	TTSAA	9 cut(s)	329, 692, 890, 1043, 1337, 1520, 1565, 1700, 1718
AhdI	GACNNNNNGTC	1 cut(s)	131
AhlI	ACTAGT	1 cut(s)	853
AjiI	CACGTC	1 cut(s)	830
AjnI	CCWGG	6 cut(s)	105, 943, 1567, 1603, 1672, 1723
AluBI	AGCT	8 cut(s)	79, 287, 335, 520, 638, 1469, 1523, 1551
AluI	AGCT	8 cut(s)	79, 287, 335, 520, 638, 1469, 1523, 1551
Alw26I	GTCTC	2 cut(s)	491, 1525
AlwI	GGATC	9 cut(s)	92, 104, 117, 710, 723, 917, 1181, 1190, 1380
Ama87I	CYCGRG	2 cut(s)	40, 543
AoxI	GGCC	8 cut(s)	3, 102, 193, 270, 1010, 1129, 1136, 1143
ApeKI	GCWGC	3 cut(s)	182, 284, 536
ApoI	RAATTY	3 cut(s)	1057, 1318, 1542
AspLEI	GCGC	3 cut(s)	321, 728, 1561
AspS9I	GGNCC	6 cut(s)	4, 103, 428, 700, 1010, 1144
AsuHPI	GGTGA	5 cut(s)	316, 545, 959, 1540, 1688
AsuII	TTCGAA	1 cut(s)	82
AvaI	CYCGRG	2 cut(s)	40, 543
AvaII	GGWCC	2 cut(s)	428, 700
AxyI	CCTNAGG	1 cut(s)	300
BaeGI	GKGCMC	1 cut(s)	1035
BalI	TGGCCA	1 cut(s)	272
BamHI	GGATCC	2 cut(s)	109, 715
BanII	GRGCYC	2 cut(s)	47, 217
BauI	CACGAG	1 cut(s)	954
BbsI	GAAGAC	1 cut(s)	897
BbvCI	CCTCAGC	3 cut(s)	169, 1524, 1761
BbvI	GCAGC	3 cut(s)	169, 296, 523
BccI	CCATC	5 cut(s)	234, 409, 1162, 1229, 1502
BceAI	ACGGC	1 cut(s)	251
BciT130I	CCWGG	6 cut(s)	107, 945, 1569, 1605, 1674, 1725
BcoDI	GTCTC	2 cut(s)	491, 1525
BcuI	ACTAGT	1 cut(s)	853
BfaI	CTAG	4 cut(s)	441, 756, 854, 1434
BfmI	CTRYAG	2 cut(s)	787, 1204
BglI	GCCNNNNNGGC	1 cut(s)	1009
BisI	GCNGC	7 cut(s)	140, 183, 186, 249, 285, 537, 760
BlsI	GCNGC	7 cut(s)	141, 184, 187, 250, 286, 538, 761
BmcAI	AGTACT	1 cut(s)	1298
Bme1390I	CCNGG	6 cut(s)	107, 945, 1569, 1605, 1674, 1725
Bme18I	GGWCC	2 cut(s)	428, 700
BmeRI	GACNNNNNGTC	1 cut(s)	131
BmeT110I	CYCGRG	2 cut(s)	40, 543
BmgBI	CACGTC	1 cut(s)	830
BmgT120I	GGNCC	6 cut(s)	4, 103, 428, 700, 1010, 1144
BmiI	GGNNCC	5 cut(s)	6, 111, 237, 717, 1176
BmrFI	CCNGG	6 cut(s)	107, 945, 1569, 1605, 1674, 1725
BmrI	ACTGGG	2 cut(s)	194, 1335
BmsI	GCATC	7 cut(s)	364, 601, 658, 739, 1213, 1294, 1402
BmuI	ACTGGG	2 cut(s)	194, 1335
BoxI	GACNNNNGTC	1 cut(s)	1122
BpiI	GAAGAC	1 cut(s)	897
BpmI	CTGGAG	3 cut(s)	59, 309, 902
Bpu10I	CCTNAGC	4 cut(s)	169, 1524, 1552, 1761
Bpu14I	TTCGAA	1 cut(s)	82
BsaBI	GATNNNNATC	1 cut(s)	1806
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	6 cut(s)	105, 231, 267, 455, 606, 719
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 1396, 1426
Bsc4I	CCNNNNNNNGG	6 cut(s)	13, 232, 279, 709, 839, 1206
Bse1I	ACTGG	4 cut(s)	200, 833, 1330, 1496
Bse21I	CCTNAGG	1 cut(s)	300
Bse3DI	GCAATG	3 cut(s)	404, 678, 1800
Bse8I	GATNNNNATC	1 cut(s)	1806
BseBI	CCWGG	6 cut(s)	107, 945, 1569, 1605, 1674, 1725
BseDI	CCNNGG	6 cut(s)	105, 231, 267, 455, 606, 719
BseGI	GGATG	6 cut(s)	147, 226, 575, 616, 673, 1513
BseJI	GATNNNNATC	1 cut(s)	1806
BseLI	CCNNNNNNNGG	6 cut(s)	13, 232, 279, 709, 839, 1206
BseMI	GCAATG	3 cut(s)	404, 678, 1800
BseMII	CTCAG	6 cut(s)	26, 183, 291, 786, 1515, 1752
BseNI	ACTGG	4 cut(s)	200, 833, 1330, 1496
BseRI	GAGGAG	4 cut(s)	82, 972, 1382, 1778
BseSI	GKGCMC	1 cut(s)	1035
BseXI	GCAGC	3 cut(s)	169, 296, 523
BseYI	CCCAGC	2 cut(s)	1226, 1240
BshFI	GGCC	8 cut(s)	5, 104, 195, 272, 1012, 1131, 1138, 1145
BsiHKCI	CYCGRG	2 cut(s)	40, 543
BsiSI	CCGG	2 cut(s)	101, 1132
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	6 cut(s)	13, 232, 279, 709, 839, 1206
BsmAI	GTCTC	2 cut(s)	491, 1525
BsmBI	CGTCTC	1 cut(s)	491
BsmFI	GGGAC	1 cut(s)	119
BsmI	GAATGC	2 cut(s)	1751, 1849
BsnI	GGCC	8 cut(s)	5, 104, 195, 272, 1012, 1131, 1138, 1145
BsoBI	CYCGRG	2 cut(s)	40, 543
Bsp119I	TTCGAA	1 cut(s)	82
Bsp1286I	GDGCHC	3 cut(s)	47, 217, 1035
Bsp1407I	TGTACA	2 cut(s)	1460, 1621
Bsp143I	GATC	9 cut(s)	97, 109, 114, 715, 922, 967, 1186, 1195, 1372
Bsp19I	CCATGG	2 cut(s)	606, 719
BspACI	CCGC	7 cut(s)	87, 137, 140, 180, 186, 249, 760
BspANI	GGCC	8 cut(s)	5, 104, 195, 272, 1012, 1131, 1138, 1145
BspCNI	CTCAG	6 cut(s)	25, 182, 292, 787, 1516, 1753
BspLI	GGNNCC	5 cut(s)	6, 111, 237, 717, 1176
BspPI	GGATC	9 cut(s)	92, 104, 117, 710, 723, 917, 1181, 1190, 1380
BspT104I	TTCGAA	1 cut(s)	82
BsrDI	GCAATG	3 cut(s)	404, 678, 1800
BsrGI	TGTACA	2 cut(s)	1460, 1621
BsrI	ACTGG	4 cut(s)	200, 833, 1330, 1496
BssECI	CCNNGG	6 cut(s)	105, 231, 267, 455, 606, 719
BssMI	GATC	9 cut(s)	97, 109, 114, 715, 922, 967, 1186, 1195, 1372
BssNI	GRCGYC	1 cut(s)	26
BssSI	CACGAG	1 cut(s)	954
BssT1I	CCWWGG	3 cut(s)	231, 606, 719
Bst2BI	CACGAG	1 cut(s)	954
Bst2UI	CCWGG	6 cut(s)	107, 945, 1569, 1605, 1674, 1725
Bst4CI	ACNGT	7 cut(s)	277, 740, 896, 1121, 1431, 1447, 1465
Bst6I	CTCTTC	1 cut(s)	674
BstACI	GRCGYC	1 cut(s)	26
BstAPI	GCANNNNNTGC	3 cut(s)	1223, 1757, 1795
BstAUI	TGTACA	2 cut(s)	1460, 1621
BstBI	TTCGAA	1 cut(s)	82
BstC8I	GCNNGC	6 cut(s)	462, 764, 768, 1361, 1791, 1822
BstDEI	CTNAG	8 cut(s)	12, 169, 300, 795, 1524, 1547, 1552, 1761
BstDSI	CCRYGG	3 cut(s)	267, 606, 719
BstEII	GGTNACC	1 cut(s)	551
BstF5I	GGATG	6 cut(s)	147, 226, 575, 616, 673, 1513
BstHHI	GCGC	3 cut(s)	321, 728, 1561
BstKTI	GATC	9 cut(s)	100, 112, 117, 718, 925, 970, 1189, 1198, 1375
BstMAI	GTCTC	2 cut(s)	491, 1525
BstMBI	GATC	9 cut(s)	97, 109, 114, 715, 922, 967, 1186, 1195, 1372
BstMWI	GCNNNNNNNGC	8 cut(s)	179, 290, 406, 466, 1009, 1223, 1757, 1795
BstNI	CCWGG	6 cut(s)	107, 945, 1569, 1605, 1674, 1725
BstPAI	GACNNNNGTC	1 cut(s)	1122
BstPI	GGTNACC	1 cut(s)	551
BstSCI	CCNGG	6 cut(s)	105, 943, 1567, 1603, 1672, 1723
BstSFI	CTRYAG	2 cut(s)	787, 1204
BstSLI	GKGCMC	1 cut(s)	1035
BstV1I	GCAGC	3 cut(s)	169, 296, 523
BstV2I	GAAGAC	1 cut(s)	897
BstX2I	RGATCY	3 cut(s)	109, 715, 1186
BstYI	RGATCY	3 cut(s)	109, 715, 1186
Bsu36I	CCTNAGG	1 cut(s)	300
BsuRI	GGCC	8 cut(s)	5, 104, 195, 272, 1012, 1131, 1138, 1145
BtgI	CCRYGG	3 cut(s)	267, 606, 719
BtrI	CACGTC	1 cut(s)	830
BtsCI	GGATG	6 cut(s)	147, 226, 575, 616, 673, 1513
BtsIMutI	CAGTG	5 cut(s)	273, 745, 840, 1323, 1452
Cac8I	GCNNGC	6 cut(s)	462, 764, 768, 1361, 1791, 1822
CfoI	GCGC	3 cut(s)	321, 728, 1561
Cfr13I	GGNCC	6 cut(s)	4, 103, 428, 700, 1010, 1144
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	6 cut(s)	851, 1297, 1461, 1480, 1590, 1622
CviAII	CATG	9 cut(s)	33, 205, 533, 607, 720, 848, 1364, 1376, 1654
CviQI	GTAC	6 cut(s)	851, 1297, 1461, 1480, 1590, 1622
DdeI	CTNAG	8 cut(s)	12, 169, 300, 795, 1524, 1547, 1552, 1761
DpnI	GATC	9 cut(s)	99, 111, 116, 717, 924, 969, 1188, 1197, 1374
DpnII	GATC	9 cut(s)	97, 109, 114, 715, 922, 967, 1186, 1195, 1372
DriI	GACNNNNNGTC	1 cut(s)	131
EaeI	YGGCCR	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	674
Eam1105I	GACNNNNNGTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	674
Eco130I	CCWWGG	3 cut(s)	231, 606, 719
Eco147I	AGGCCT	2 cut(s)	195, 1138
Eco24I	GRGCYC	2 cut(s)	47, 217
Eco32I	GATATC	1 cut(s)	734
Eco47I	GGWCC	2 cut(s)	428, 700
Eco57I	CTGAAG	1 cut(s)	1026
Eco81I	CCTNAGG	1 cut(s)	300
Eco88I	CYCGRG	2 cut(s)	40, 543
Eco91I	GGTNACC	1 cut(s)	551
EcoO109I	RGGNCCY	1 cut(s)	428
EcoO65I	GGTNACC	1 cut(s)	551
EcoRI	GAATTC	1 cut(s)	1542
EcoRII	CCWGG	6 cut(s)	105, 943, 1567, 1603, 1672, 1723
EcoRV	GATATC	1 cut(s)	734
EcoT14I	CCWWGG	3 cut(s)	231, 606, 719
EcoT22I	ATGCAT	2 cut(s)	1219, 1753
EcoT38I	GRGCYC	2 cut(s)	47, 217
ErhI	CCWWGG	3 cut(s)	231, 606, 719
Esp3I	CGTCTC	1 cut(s)	491
FaeI	CATG	9 cut(s)	36, 208, 536, 610, 723, 851, 1367, 1379, 1657
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	9 cut(s)	32, 204, 532, 606, 719, 847, 1363, 1375, 1653
FauI	CCCGC	1 cut(s)	144
Fnu4HI	GCNGC	7 cut(s)	140, 183, 186, 249, 285, 537, 760
FokI	GGATG	6 cut(s)	134, 213, 562, 623, 680, 1520
FriOI	GRGCYC	2 cut(s)	47, 217
Fsp4HI	GCNGC	7 cut(s)	140, 183, 186, 249, 285, 537, 760
FspBI	CTAG	4 cut(s)	441, 756, 854, 1434
FspI	TGCGCA	1 cut(s)	727
GlaI	GCGC	3 cut(s)	320, 727, 1560
GluI	GCNGC	7 cut(s)	140, 183, 186, 249, 285, 537, 760
GsaI	CCCAGC	2 cut(s)	1230, 1244
GsuI	CTGGAG	3 cut(s)	59, 309, 902
HaeIII	GGCC	8 cut(s)	5, 104, 195, 272, 1012, 1131, 1138, 1145
HapII	CCGG	2 cut(s)	101, 1132
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	3 cut(s)	321, 728, 1561
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	9 cut(s)	36, 208, 536, 610, 723, 851, 1367, 1379, 1657
Hin6I	GCGC	3 cut(s)	319, 726, 1559
HinP1I	GCGC	3 cut(s)	319, 726, 1559
HindIII	AAGCTT	1 cut(s)	1549
HinfI	GANTC	2 cut(s)	436, 843
HpaII	CCGG	2 cut(s)	101, 1132
HphI	GGTGA	5 cut(s)	316, 545, 959, 1540, 1688
Hpy166II	GTNNAC	2 cut(s)	446, 899
Hpy188I	TCNGA	7 cut(s)	97, 114, 152, 456, 526, 1776, 1783
Hpy188III	TCNNGA	7 cut(s)	14, 590, 665, 881, 1397, 1434, 1505
Hpy8I	GTNNAC	2 cut(s)	446, 899
Hpy99I	CGWCG	2 cut(s)	28, 1431
HpyAV	CCTTC	4 cut(s)	833, 1001, 1079, 1431
HpyCH4III	ACNGT	7 cut(s)	277, 740, 896, 1121, 1431, 1447, 1465
HpyCH4IV	ACGT	1 cut(s)	829
HpyF10VI	GCNNNNNNNGC	8 cut(s)	179, 290, 406, 466, 1009, 1223, 1757, 1795
HpyF3I	CTNAG	8 cut(s)	12, 169, 300, 795, 1524, 1547, 1552, 1761
HpySE526I	ACGT	1 cut(s)	829
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	9 cut(s)	36, 208, 536, 610, 723, 851, 1367, 1379, 1657
HspAI	GCGC	3 cut(s)	319, 726, 1559
Kzo9I	GATC	9 cut(s)	97, 109, 114, 715, 922, 967, 1186, 1195, 1372
LmnI	GCTCC	4 cut(s)	235, 290, 757, 1621
Lsp1109I	GCAGC	3 cut(s)	169, 296, 523
LweI	GCATC	7 cut(s)	364, 601, 658, 739, 1213, 1294, 1402
MaeI	CTAG	4 cut(s)	441, 756, 854, 1434
MaeII	ACGT	1 cut(s)	829
MaeIII	GTNAC	1 cut(s)	551
MalI	GATC	9 cut(s)	99, 111, 116, 717, 924, 969, 1188, 1197, 1374
MboI	GATC	9 cut(s)	97, 109, 114, 715, 922, 967, 1186, 1195, 1372
MboII	GAAGA	8 cut(s)	376, 688, 691, 704, 775, 902, 1244, 1730
MfeI	CAATTG	1 cut(s)	1341
MflI	RGATCY	3 cut(s)	109, 715, 1186
MhlI	GDGCHC	3 cut(s)	47, 217, 1035
MlsI	TGGCCA	1 cut(s)	272
MluCI	AATT	8 cut(s)	934, 1057, 1318, 1341, 1348, 1515, 1542, 1784
MluNI	TGGCCA	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	175
Mox20I	TGGCCA	1 cut(s)	272
Mph1103I	ATGCAT	2 cut(s)	1219, 1753
MscI	TGGCCA	1 cut(s)	272
MseI	TTAA	5 cut(s)	1026, 1154, 1263, 1686, 1710
MslI	CAYNNNNRTG	1 cut(s)	1746
Msp20I	TGGCCA	1 cut(s)	272
MspA1I	CMGCKG	3 cut(s)	182, 251, 287
MspI	CCGG	2 cut(s)	101, 1132
MspR9I	CCNGG	6 cut(s)	107, 945, 1569, 1605, 1674, 1725
MunI	CAATTG	1 cut(s)	1341
Mva1269I	GAATGC	2 cut(s)	1751, 1849
MvaI	CCWGG	6 cut(s)	107, 945, 1569, 1605, 1674, 1725
MwoI	GCNNNNNNNGC	8 cut(s)	179, 290, 406, 466, 1009, 1223, 1757, 1795
NcoI	CCATGG	2 cut(s)	606, 719
NdeII	GATC	9 cut(s)	97, 109, 114, 715, 922, 967, 1186, 1195, 1372
NlaIII	CATG	9 cut(s)	36, 208, 536, 610, 723, 851, 1367, 1379, 1657
NlaIV	GGNNCC	5 cut(s)	6, 111, 237, 717, 1176
NmuCI	GTSAC	1 cut(s)	551
NsbI	TGCGCA	1 cut(s)	727
NsiI	ATGCAT	2 cut(s)	1219, 1753
NspV	TTCGAA	1 cut(s)	82
PaeR7I	CTCGAG	1 cut(s)	543
PceI	AGGCCT	2 cut(s)	195, 1138
PctI	GAATGC	2 cut(s)	1751, 1849
PfeI	GAWTC	2 cut(s)	436, 843
PflFI	GACNNNGTC	1 cut(s)	1447
PflMI	CCANNNNNTGG	1 cut(s)	232
PkrI	GCNGC	7 cut(s)	141, 184, 187, 250, 286, 538, 761
PpuMI	RGGWCCY	1 cut(s)	428
PshAI	GACNNNNGTC	1 cut(s)	1122
PsiI	TTATAA	1 cut(s)	480
Psp5II	RGGWCCY	1 cut(s)	428
Psp6I	CCWGG	6 cut(s)	105, 943, 1567, 1603, 1672, 1723
PspEI	GGTNACC	1 cut(s)	551
PspFI	CCCAGC	2 cut(s)	1226, 1240
PspGI	CCWGG	6 cut(s)	105, 943, 1567, 1603, 1672, 1723
PspN4I	GGNNCC	5 cut(s)	6, 111, 237, 717, 1176
PspPI	GGNCC	6 cut(s)	4, 103, 428, 700, 1010, 1144
PspPPI	RGGWCCY	1 cut(s)	428
PspXI	VCTCGAGB	1 cut(s)	543
PsuI	RGATCY	3 cut(s)	109, 715, 1186
PsyI	GACNNNGTC	1 cut(s)	1447
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	6 cut(s)	852, 1298, 1462, 1481, 1591, 1623
RsaNI	GTAC	6 cut(s)	851, 1297, 1461, 1480, 1590, 1622
RseI	CAYNNNNRTG	1 cut(s)	1746
SaqAI	TTAA	5 cut(s)	1026, 1154, 1263, 1686, 1710
SatI	GCNGC	7 cut(s)	140, 183, 186, 249, 285, 537, 760
Sau3AI	GATC	9 cut(s)	97, 109, 114, 715, 922, 967, 1186, 1195, 1372
Sau96I	GGNCC	6 cut(s)	4, 103, 428, 700, 1010, 1144
ScaI	AGTACT	1 cut(s)	1298
ScrFI	CCNGG	6 cut(s)	107, 945, 1569, 1605, 1674, 1725
SduI	GDGCHC	3 cut(s)	47, 217, 1035
SfaNI	GCATC	7 cut(s)	364, 601, 658, 739, 1213, 1294, 1402
SfcI	CTRYAG	2 cut(s)	787, 1204
Sfr274I	CTCGAG	1 cut(s)	543
SfuI	TTCGAA	1 cut(s)	82
SinI	GGWCC	2 cut(s)	428, 700
SlaI	CTCGAG	1 cut(s)	543
SmiMI	CAYNNNNRTG	1 cut(s)	1746
SmlI	CTYRAG	1 cut(s)	543
SmoI	CTYRAG	1 cut(s)	543
SpeI	ACTAGT	1 cut(s)	853
Sse9I	AATT	8 cut(s)	934, 1057, 1318, 1341, 1348, 1515, 1542, 1784
SseBI	AGGCCT	2 cut(s)	195, 1138
SsiI	CCGC	7 cut(s)	87, 137, 140, 180, 186, 249, 760
SspI	AATATT	1 cut(s)	1383
SspMI	CTAG	4 cut(s)	441, 756, 854, 1434
StuI	AGGCCT	2 cut(s)	195, 1138
StyD4I	CCNGG	6 cut(s)	105, 943, 1567, 1603, 1672, 1723
StyI	CCWWGG	3 cut(s)	231, 606, 719
TaaI	ACNGT	7 cut(s)	277, 740, 896, 1121, 1431, 1447, 1465
TaiI	ACGT	1 cut(s)	832
TaqI	TCGA	7 cut(s)	82, 159, 544, 970, 1079, 1126, 1426
TasI	AATT	8 cut(s)	934, 1057, 1318, 1341, 1348, 1515, 1542, 1784
TatI	WGTACW	4 cut(s)	850, 1296, 1460, 1621
TauI	GCSGC	4 cut(s)	142, 188, 251, 762
TfiI	GAWTC	2 cut(s)	436, 843
Tru1I	TTAA	5 cut(s)	1026, 1154, 1263, 1686, 1710
Tru9I	TTAA	5 cut(s)	1026, 1154, 1263, 1686, 1710
TscAI	CASTG	5 cut(s)	280, 745, 840, 1330, 1452
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	3 cut(s)	182, 284, 536
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	3 cut(s)	521, 689, 1730
TspGWI	ACGGA	3 cut(s)	121, 1052, 1497
TspRI	CASTG	5 cut(s)	280, 745, 840, 1330, 1452
Tth111I	GACNNNGTC	1 cut(s)	1447
Van91I	CCANNNNNTGG	1 cut(s)	232
VpaK11BI	GGWCC	2 cut(s)	428, 700
XapI	RAATTY	3 cut(s)	1057, 1318, 1542
XbaI	TCTAGA	1 cut(s)	1433
XcmI	CCANNNNNNNNNTGG	2 cut(s)	229, 613
XhoI	CTCGAG	1 cut(s)	543
XspI	CTAG	4 cut(s)	441, 756, 854, 1434
ZrmI	AGTACT	1 cut(s)	1298
Zsp2I	ATGCAT	2 cut(s)	1219, 1753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.