Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003041

Physical Location & Seq

Genomic Coordinates Reverse (-)

55283704 .. 55289372

Gene Structure 5669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00374260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2304 bp

ATGGCCGCAACTCAGGAAAAAGCGACGCCTCCTTCTACACCTTTATCCTCCAAACCCATTCTCCAGCTTCGGACCGCCTCCTCCGCATCATCCGATCCGGCCCAGGATCCGATCTCAACCCGACCCTCCGTCCCGCCGCCCCTCATCCGACCCCTCGACTCCACCTCAGCCAACACCGCTGCCGCCAAAGGCCTCTCAGTCATGTTGAGGGCTCAATCCAGCCATCCCTTGGAGCCTTTATCTGCCGCTGAAATCTCGGTAGCCGTGGCCACTGTCAGGGCAGCTGGAGCAACCCCTGAGGTGAGGGATAGTATGCGCTTTGTTGAAGTAGCTTTGGTAGAACCAGATAAGCGTGTTGTTGCATTGGCAGATGCGTATTTCTTCCCTCCTTTCCAGCCATCATTGCTTCCCAGAACAAAAGGAGGACCTATGATTCCTAGTAAACTTCCTCCGAGGCAAGCGAGGCTTGTAGTTTATAACAAAAAGTCAAATGAGACTAGTGTTTGGGTTGTTGAGCTATCGGAAGTTCATGCTGCAACTCGAGGTGGTCACCATAGGGGTAAAGTCATCTCATCCAAAGTTGTTCCAGATGTTCAGCCTCCCATGGATGCTATGGAATATGCTGAATGTGAAGCTGTTGTAAAGGACTATCCTCCATTTCGGGATGCAATGAAGAAGAGGGGTATTGAAGATTTGGACCTTGTAATGGTGGATCCATGGTGCGCAGGATATCACAGTGAGGCTGATGCTCCTAGCCGCAGGCTTGCTAAACCACTTATCTTCTGTAGAACTGAGAGTGATTGCCCTATGGAAAATGGTTATGCTCGTCCAGTGGAAGGAATCCATGTACTAGTTGATATGCAAAATATGGTTGTTCTGGAGTTTGAAGACCGTAAACTTGTTCCCCTGCCTCCTGCTGATCCTTTGAGAAATTATACTCCTGGTGAAACACGAGGAGGTGTTGATCGAAGTGATGTGAAACCCCTAAAGATAGTTCAGCCTGAAGGGCCAAGTTTTCGTGTTAATGGGCACTTTGTTGAATGGCAGAAGTGGAATTTCCGTATTGGCTTTACTTCGAGGGAAGGTTTGGTTATCTACTCTGTTGCTTATATTGATGGTAGTCGAGGCCGGAGGCCTGTGGCCCACAGGTTAAGTTTTGTTGAGATGGTGGTTCCTTATGGAGATCCAAATGATCCCCACTACAGGAAAAATGCATTTGATGCTGGGGAAGATGGGCTGGGTAAAAATGCACATTCTCTTAAAAAGGGTTGTGATTGTTTAGGTTATATCAAGTACTTTGATGCACACTTTACCAATTTCACTGGGGGTGTTGAAACAATTGAGAATTGTGTTTGCTTGCATGAGGAGGATCATGGAATATTATGGAAGCATCAGGATTGGAGAACAGGTTTAGCAGAAGTTCGACGGTCTAGAAGGCTGACAGTGTCTTTTATCTGTACAGTAGCTAACTATGAGTATGGATTTTACTGGCATTTTTATCAGGATGGGAAAATTGAAGCTGAGGTGAGACTTACAGGAATTCTAAGCTTAGGTGCACTTCAACCAGGAGAAACCCGAAAGTATGGTACAACTATTGCACCTGGACTATATGCTCCTGTACATCAGCACTTTTTTGTTGCTCGTATGGACATGGCAGTTGATAGTAAGCCTGGTGAAACTTTTAATCAGGTGGTTGAAGTAAATGTTAAAGTTGAAGAACCAGGAAAGAACAATGTTCATAACAATGCATTCTATGCTGAGGAGAAACTTCTGAAATCAGAATTGCAAGCAATGCGTGATTGTAATCCTTTATCTGCTCGCCATTGGATTGTTAGGCACACAAGAAATGTCAACCGGACAGGACAGCTAACAGGTTACAAGCTGGTACCTGGTTCAAATTGTTTACCATTAGCCGGTTCTGAGGCAAAGTTTCTGAGAAGAGCTGCTTTTTTGAAGCATAATCTTTGGGTCACGTCCTATGCACGTGATGAAATGTATCCTGGAGGAGAATTTCCTAATCAAAATCCACGTATTGGGGAGGGATTAGCCACTTGGGTTCAGCAAGATCGGTCTCTGGAAGAAGCTGACATTGTTCTTTGGTATGTATTTGGAGTGACCCACATTCCTCGACTGGAAGACTGGCCGGTCATGCCTGTGGAACATATTGGTTTTACGCTCATGCCACATGGTTTCTTTAACTGCTCAACGGCAGTGGACGTCCCTCCGAATACATGTGAGATGGACCTCAAGGAAAATGAGATGGCTGCAAAACCTATTCAGAATGGTCTTATAGCCAAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

767

Amino Acids

85.53

Weight (kDa)

6.68

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN3	PF02728	200 - 303	9.7e-28	Copper amine oxidase, N3 domain
Cu_amine_oxid	PF01179	329 - 736	7.9e-154	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42490
fragaria_vesca	FvH4_2g01360 FvH4_2g01360 FvH4_2g01360 FvH4_4g25490 FvH4_4g25490 FvH4_4g25490 FvH4_4g25490 FvH4_5g06090 FvH4_5g06090 FvH4_5g06090 FvH4_5g06090
malus_domestica	MD06G1166900.v1.1 MD13G1102300.v1.1 MD14G1172500.v1.1
prunus_persica	Prupe.1G243500_v2.0.a1 Prupe.5G166700_v2.0.a1 Prupe.5G166700_v2.0.a1 Prupe.5G166700_v2.0.a1
pyrus_communis	pycom13g08940 pycom14g14400
rosa_chinensis	RchiOBHm_Chr4g0432841 RchiOBHm_Chr7g0192721
rosa_laevigata	RLG00000004334 RLG00000006809
rosa_multiflora	Rmu_sc0002040.1_g000015 Rmu_sc0005234.1_g000004
rosa_roxburghii	Rroxscaffold_3G00262720 Rroxscaffold_5G00374260
rosa_rugosa	Rorug04G0263100 Rorug07G0004200
rosa_samantha	Rh4AG317300 Rh4BG325500 Rh4CG340400 Rh4DG320700 Rh7DG131400
rosa_wichuraiana	Rw4G027600 Rw7G011050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	477
AasI	GACNNNNNNGTC	1 cut(s)	2144
AatII	GACGTC	1 cut(s)	2220
Acc16I	TGCGCA	1 cut(s)	724
Acc65I	GGTACC	1 cut(s)	1885
AccB1I	GGYRCC	1 cut(s)	1885
AccB7I	CCANNNNNTGG	2 cut(s)	229, 2033
AciI	CCGC	9 cut(s)	6, 75, 84, 134, 137, 177, 183, 246, 757
AclWI	GGATC	9 cut(s)	89, 101, 114, 707, 720, 914, 1178, 1187, 1377
AcoI	YGGCCR	3 cut(s)	3, 267, 2141
AcsI	RAATTY	3 cut(s)	1054, 1539, 2009
AcuI	CTGAAG	1 cut(s)	1023
AcvI	CACGTG	1 cut(s)	1985
AcyI	GRCGYC	2 cut(s)	26, 2217
AfaI	GTAC	6 cut(s)	849, 1295, 1459, 1588, 1620, 1887
AfiI	CCNNNNNNNGG	7 cut(s)	229, 276, 706, 836, 1203, 1913, 2033
AflIII	ACRYGT	1 cut(s)	2231
AhdI	GACNNNNNGTC	1 cut(s)	128
AhlI	ACTAGT	2 cut(s)	497, 850
AjiI	CACGTC	1 cut(s)	1974
AjnI	CCWGG	8 cut(s)	102, 940, 1564, 1600, 1669, 1720, 1888, 1999
Alw21I	GWGCWC	1 cut(s)	1558
Alw26I	GTCTC	3 cut(s)	488, 1522, 2076
Alw44I	GTGCAC	1 cut(s)	1554
AlwI	GGATC	9 cut(s)	89, 101, 114, 707, 720, 914, 1178, 1187, 1377
Ama87I	CYCGRG	1 cut(s)	540
AoxI	GGCC	9 cut(s)	3, 99, 190, 267, 1007, 1126, 1133, 1140, 2141
ApaLI	GTGCAC	1 cut(s)	1554
ApeKI	GCWGC	5 cut(s)	179, 281, 533, 1943, 2264
ApoI	RAATTY	3 cut(s)	1054, 1539, 2009
Asp718I	GGTACC	1 cut(s)	1885
AspLEI	GCGC	2 cut(s)	318, 725
AspS9I	GGNCC	7 cut(s)	72, 100, 425, 697, 1007, 1141, 2242
AsuHPI	GGTGA	5 cut(s)	313, 542, 956, 1537, 1685
AvaI	CYCGRG	1 cut(s)	540
AvaII	GGWCC	4 cut(s)	72, 425, 697, 2242
AxyI	CCTNAGG	1 cut(s)	297
BaeGI	GKGCMC	2 cut(s)	1032, 1558
BalI	TGGCCA	1 cut(s)	269
BamHI	GGATCC	2 cut(s)	106, 712
BanI	GGYRCC	1 cut(s)	1885
BanII	GRGCYC	1 cut(s)	214
BauI	CACGAG	1 cut(s)	951
BbrPI	CACGTG	1 cut(s)	1985
BbsI	GAAGAC	2 cut(s)	894, 2142
Bbv12I	GWGCWC	1 cut(s)	1558
BbvCI	CCTCAGC	3 cut(s)	166, 1521, 1758
BbvI	GCAGC	5 cut(s)	166, 293, 520, 1930, 2251
BccI	CCATC	8 cut(s)	231, 406, 1109, 1159, 1226, 1499, 2233, 2254
BceAI	ACGGC	2 cut(s)	248, 2223
BciT130I	CCWGG	8 cut(s)	104, 942, 1566, 1602, 1671, 1722, 1890, 2001
BciVI	GTATCC	1 cut(s)	2007
BcoDI	GTCTC	3 cut(s)	488, 1522, 2076
BcuI	ACTAGT	2 cut(s)	497, 850
BfaI	CTAG	5 cut(s)	438, 498, 753, 851, 1431
BfmI	CTRYAG	2 cut(s)	784, 1201
BfuI	GTATCC	1 cut(s)	2007
BglI	GCCNNNNNGGC	1 cut(s)	1006
BmcAI	AGTACT	1 cut(s)	1295
Bme1390I	CCNGG	8 cut(s)	104, 942, 1566, 1602, 1671, 1722, 1890, 2001
Bme18I	GGWCC	4 cut(s)	72, 425, 697, 2242
BmeRI	GACNNNNNGTC	1 cut(s)	128
BmeT110I	CYCGRG	1 cut(s)	540
BmgBI	CACGTC	1 cut(s)	1974
BmgT120I	GGNCC	7 cut(s)	72, 100, 425, 697, 1007, 1141, 2242
BmiI	GGNNCC	5 cut(s)	108, 234, 714, 1173, 1887
BmrFI	CCNGG	8 cut(s)	104, 942, 1566, 1602, 1671, 1722, 1890, 2001
BmrI	ACTGGG	1 cut(s)	1332
BmsI	GCATC	8 cut(s)	95, 361, 598, 655, 736, 1210, 1291, 1399
BmuI	ACTGGG	1 cut(s)	1332
BpiI	GAAGAC	2 cut(s)	894, 2142
BpmI	CTGGAG	4 cut(s)	47, 306, 899, 2022
Bpu10I	CCTNAGC	4 cut(s)	166, 1521, 1549, 1758
BpuEI	CTTGAG	1 cut(s)	2231
BsaAI	YACGTR	2 cut(s)	1985, 2030
BsaBI	GATNNNNATC	1 cut(s)	1803
BsaHI	GRCGYC	2 cut(s)	26, 2217
BsaI	GGTCTC	1 cut(s)	2076
BsaJI	CCNNGG	6 cut(s)	102, 228, 264, 452, 603, 716
BsaWI	WCCGGW	1 cut(s)	1854
BsaXI	ACNNNNNCTCC	4 cut(s)	45, 75, 1393, 1423
Bsc4I	CCNNNNNNNGG	7 cut(s)	229, 276, 706, 836, 1203, 1913, 2033
Bse118I	RCCGGY	2 cut(s)	1913, 2143
Bse1I	ACTGG	5 cut(s)	830, 1327, 1493, 2136, 2144
Bse21I	CCTNAGG	1 cut(s)	297
Bse3DI	GCAATG	3 cut(s)	401, 675, 1797
Bse8I	GATNNNNATC	1 cut(s)	1803
BseBI	CCWGG	8 cut(s)	104, 942, 1566, 1602, 1671, 1722, 1890, 2001
BseDI	CCNNGG	6 cut(s)	102, 228, 264, 452, 603, 716
BseGI	GGATG	7 cut(s)	89, 144, 223, 572, 613, 670, 1510
BseJI	GATNNNNATC	1 cut(s)	1803
BseLI	CCNNNNNNNGG	7 cut(s)	229, 276, 706, 836, 1203, 1913, 2033
BseMI	GCAATG	3 cut(s)	401, 675, 1797
BseMII	CTCAG	9 cut(s)	26, 180, 210, 288, 783, 1512, 1749, 1911, 1925
BseNI	ACTGG	5 cut(s)	830, 1327, 1493, 2136, 2144
BseRI	GAGGAG	5 cut(s)	70, 969, 1379, 1775, 2019
BseSI	GKGCMC	2 cut(s)	1032, 1558
BseXI	GCAGC	5 cut(s)	166, 293, 520, 1930, 2251
BseYI	CCCAGC	2 cut(s)	1223, 1237
BshFI	GGCC	9 cut(s)	5, 101, 192, 269, 1009, 1128, 1135, 1142, 2143
BshNI	GGYRCC	1 cut(s)	1885
BsiHKAI	GWGCWC	1 cut(s)	1558
BsiHKCI	CYCGRG	1 cut(s)	540
BsiSI	CCGG	5 cut(s)	98, 1129, 1855, 1914, 2144
BslFI	GGGAC	2 cut(s)	116, 2204
BslI	CCNNNNNNNGG	7 cut(s)	229, 276, 706, 836, 1203, 1913, 2033
BsmAI	GTCTC	3 cut(s)	488, 1522, 2076
BsmFI	GGGAC	2 cut(s)	116, 2204
BsmI	GAATGC	1 cut(s)	1748
BsnI	GGCC	9 cut(s)	5, 101, 192, 269, 1009, 1128, 1135, 1142, 2143
Bso31I	GGTCTC	1 cut(s)	2076
BsoBI	CYCGRG	1 cut(s)	540
Bsp1286I	GDGCHC	3 cut(s)	214, 1032, 1558
Bsp1407I	TGTACA	2 cut(s)	1457, 1618
Bsp19I	CCATGG	2 cut(s)	603, 716
BspACI	CCGC	9 cut(s)	6, 75, 84, 134, 137, 177, 183, 246, 757
BspANI	GGCC	9 cut(s)	5, 101, 192, 269, 1009, 1128, 1135, 1142, 2143
BspCNI	CTCAG	9 cut(s)	25, 179, 209, 289, 784, 1513, 1750, 1912, 1926
BspLI	GGNNCC	5 cut(s)	108, 234, 714, 1173, 1887
BspPI	GGATC	9 cut(s)	89, 101, 114, 707, 720, 914, 1178, 1187, 1377
BspQI	GCTCTTC	1 cut(s)	1933
BspT107I	GGYRCC	1 cut(s)	1885
BspTNI	GGTCTC	1 cut(s)	2076
BsrDI	GCAATG	3 cut(s)	401, 675, 1797
BsrFI	RCCGGY	2 cut(s)	1913, 2143
BsrGI	TGTACA	2 cut(s)	1457, 1618
BsrI	ACTGG	5 cut(s)	830, 1327, 1493, 2136, 2144
BssAI	RCCGGY	2 cut(s)	1913, 2143
BssECI	CCNNGG	6 cut(s)	102, 228, 264, 452, 603, 716
BssNI	GRCGYC	2 cut(s)	26, 2217
BssSI	CACGAG	1 cut(s)	951
BssT1I	CCWWGG	3 cut(s)	228, 603, 716
Bst2BI	CACGAG	1 cut(s)	951
Bst2UI	CCWGG	8 cut(s)	104, 942, 1566, 1602, 1671, 1722, 1890, 2001
Bst4CI	ACNGT	6 cut(s)	274, 737, 893, 1428, 1444, 1462
Bst6I	CTCTTC	2 cut(s)	671, 1933
BstACI	GRCGYC	2 cut(s)	26, 2217
BstAPI	GCANNNNNTGC	3 cut(s)	1220, 1754, 1792
BstAUI	TGTACA	2 cut(s)	1457, 1618
BstBAI	YACGTR	2 cut(s)	1985, 2030
BstC8I	GCNNGC	6 cut(s)	459, 761, 765, 1358, 1788, 1819
BstDSI	CCRYGG	3 cut(s)	264, 603, 716
BstEII	GGTNACC	1 cut(s)	548
BstF5I	GGATG	7 cut(s)	89, 144, 223, 572, 613, 670, 1510
BstHHI	GCGC	2 cut(s)	318, 725
BstMAI	GTCTC	3 cut(s)	488, 1522, 2076
BstNI	CCWGG	8 cut(s)	104, 942, 1566, 1602, 1671, 1722, 1890, 2001
BstNSI	RCATGY	1 cut(s)	2235
BstPI	GGTNACC	1 cut(s)	548
BstSCI	CCNGG	8 cut(s)	102, 940, 1564, 1600, 1669, 1720, 1888, 1999
BstSFI	CTRYAG	2 cut(s)	784, 1201
BstSLI	GKGCMC	2 cut(s)	1032, 1558
BstV1I	GCAGC	5 cut(s)	166, 293, 520, 1930, 2251
BstV2I	GAAGAC	2 cut(s)	894, 2142
BstX2I	RGATCY	3 cut(s)	106, 712, 1183
BstYI	RGATCY	3 cut(s)	106, 712, 1183
Bsu36I	CCTNAGG	1 cut(s)	297
BsuI	GTATCC	1 cut(s)	2007
BsuRI	GGCC	9 cut(s)	5, 101, 192, 269, 1009, 1128, 1135, 1142, 2143
BtgI	CCRYGG	3 cut(s)	264, 603, 716
BtrI	CACGTC	1 cut(s)	1974
BtsCI	GGATG	7 cut(s)	89, 144, 223, 572, 613, 670, 1510
BtsI	GCAGTG	1 cut(s)	2217
BtsIMutI	CAGTG	6 cut(s)	270, 742, 837, 1320, 1449, 2217
Cac8I	GCNNGC	6 cut(s)	459, 761, 765, 1358, 1788, 1819
CfoI	GCGC	2 cut(s)	318, 725
Cfr10I	RCCGGY	2 cut(s)	1913, 2143
Cfr13I	GGNCC	7 cut(s)	72, 100, 425, 697, 1007, 1141, 2242
CpoI	CGGWCCG	1 cut(s)	72
CseI	GACGC	1 cut(s)	34
CsiI	ACCWGGT	1 cut(s)	1888
Csp6I	GTAC	6 cut(s)	848, 1294, 1458, 1587, 1619, 1886
CspCI	CAANNNNNGTGG	2 cut(s)	2193, 2228
CspI	CGGWCCG	1 cut(s)	72
CviQI	GTAC	6 cut(s)	848, 1294, 1458, 1587, 1619, 1886
DrdI	GACNNNNNNGTC	1 cut(s)	2144
DriI	GACNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	2144
EaeI	YGGCCR	3 cut(s)	3, 267, 2141
Eam1104I	CTCTTC	2 cut(s)	671, 1933
Eam1105I	GACNNNNNGTC	1 cut(s)	128
EarI	CTCTTC	2 cut(s)	671, 1933
Eco130I	CCWWGG	3 cut(s)	228, 603, 716
Eco147I	AGGCCT	2 cut(s)	192, 1135
Eco24I	GRGCYC	1 cut(s)	214
Eco31I	GGTCTC	1 cut(s)	2076
Eco32I	GATATC	1 cut(s)	731
Eco47I	GGWCC	4 cut(s)	72, 425, 697, 2242
Eco57I	CTGAAG	1 cut(s)	1023
Eco72I	CACGTG	1 cut(s)	1985
Eco81I	CCTNAGG	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	540
Eco91I	GGTNACC	1 cut(s)	548
EcoO109I	RGGNCCY	1 cut(s)	425
EcoO65I	GGTNACC	1 cut(s)	548
EcoRI	GAATTC	1 cut(s)	1539
EcoRII	CCWGG	8 cut(s)	102, 940, 1564, 1600, 1669, 1720, 1888, 1999
EcoRV	GATATC	1 cut(s)	731
EcoT14I	CCWWGG	3 cut(s)	228, 603, 716
EcoT22I	ATGCAT	2 cut(s)	1216, 1750
EcoT38I	GRGCYC	1 cut(s)	214
ErhI	CCWWGG	3 cut(s)	228, 603, 716
FalI	AAGNNNNNCTT	4 cut(s)	450, 482, 1930, 1962
FaqI	GGGAC	2 cut(s)	116, 2204
FauI	CCCGC	1 cut(s)	141
FokI	GGATG	7 cut(s)	76, 131, 210, 559, 620, 677, 1517
FriOI	GRGCYC	1 cut(s)	214
FspBI	CTAG	5 cut(s)	438, 498, 753, 851, 1431
FspI	TGCGCA	1 cut(s)	724
GlaI	GCGC	2 cut(s)	317, 724
GsaI	CCCAGC	2 cut(s)	1227, 1241
GsuI	CTGGAG	4 cut(s)	47, 306, 899, 2022
HaeIII	GGCC	9 cut(s)	5, 101, 192, 269, 1009, 1128, 1135, 1142, 2143
HapII	CCGG	5 cut(s)	98, 1129, 1855, 1914, 2144
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	2 cut(s)	318, 725
Hin1I	GRCGYC	2 cut(s)	26, 2217
Hin6I	GCGC	2 cut(s)	316, 723
HinP1I	GCGC	2 cut(s)	316, 723
HincII	GTYRAC	1 cut(s)	1852
HindII	GTYRAC	1 cut(s)	1852
HindIII	AAGCTT	1 cut(s)	1546
HinfI	GANTC	3 cut(s)	158, 433, 840
HpaII	CCGG	5 cut(s)	98, 1129, 1855, 1914, 2144
HphI	GGTGA	5 cut(s)	313, 542, 956, 1537, 1685
Hpy166II	GTNNAC	6 cut(s)	443, 896, 1556, 1852, 1904, 2215
Hpy188III	TCNNGA	8 cut(s)	14, 587, 662, 878, 1394, 1431, 1502, 2075
Hpy8I	GTNNAC	6 cut(s)	443, 896, 1556, 1852, 1904, 2215
Hpy99I	CGWCG	2 cut(s)	28, 1428
HpyAV	CCTTC	5 cut(s)	42, 830, 998, 1076, 1428
HpyCH4III	ACNGT	6 cut(s)	274, 737, 893, 1428, 1444, 1462
HpyCH4IV	ACGT	4 cut(s)	1973, 1984, 2029, 2217
HpySE526I	ACGT	4 cut(s)	1973, 1984, 2029, 2217
Hsp92I	GRCGYC	2 cut(s)	26, 2217
HspAI	GCGC	2 cut(s)	316, 723
KpnI	GGTACC	1 cut(s)	1889
LguI	GCTCTTC	1 cut(s)	1933
LmnI	GCTCC	4 cut(s)	232, 287, 754, 1618
Lsp1109I	GCAGC	5 cut(s)	166, 293, 520, 1930, 2251
LweI	GCATC	8 cut(s)	95, 361, 598, 655, 736, 1210, 1291, 1399
MabI	ACCWGGT	1 cut(s)	1888
MaeI	CTAG	5 cut(s)	438, 498, 753, 851, 1431
MaeII	ACGT	4 cut(s)	1973, 1984, 2029, 2217
MaeIII	GTNAC	4 cut(s)	548, 1874, 1969, 2113
MfeI	CAATTG	1 cut(s)	1338
MflI	RGATCY	3 cut(s)	106, 712, 1183
MhlI	GDGCHC	3 cut(s)	214, 1032, 1558
MlsI	TGGCCA	1 cut(s)	269
MluNI	TGGCCA	1 cut(s)	269
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	172
Mox20I	TGGCCA	1 cut(s)	269
Mph1103I	ATGCAT	2 cut(s)	1216, 1750
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	6 cut(s)	1023, 1151, 1260, 1683, 1707, 2196
MslI	CAYNNNNRTG	2 cut(s)	1743, 2153
Msp20I	TGGCCA	1 cut(s)	269
MspA1I	CMGCKG	3 cut(s)	179, 248, 284
MspI	CCGG	5 cut(s)	98, 1129, 1855, 1914, 2144
MspR9I	CCNGG	8 cut(s)	104, 942, 1566, 1602, 1671, 1722, 1890, 2001
MunI	CAATTG	1 cut(s)	1338
Mva1269I	GAATGC	1 cut(s)	1748
MvaI	CCWGG	8 cut(s)	104, 942, 1566, 1602, 1671, 1722, 1890, 2001
NcoI	CCATGG	2 cut(s)	603, 716
NlaIV	GGNNCC	5 cut(s)	108, 234, 714, 1173, 1887
NmuCI	GTSAC	3 cut(s)	548, 1969, 2113
NsbI	TGCGCA	1 cut(s)	724
NsiI	ATGCAT	2 cut(s)	1216, 1750
NspI	RCATGY	1 cut(s)	2235
PaeR7I	CTCGAG	1 cut(s)	540
PceI	AGGCCT	2 cut(s)	192, 1135
PciI	ACATGT	1 cut(s)	2231
PciSI	GCTCTTC	1 cut(s)	1933
PctI	GAATGC	1 cut(s)	1748
PfeI	GAWTC	2 cut(s)	433, 840
PflFI	GACNNNGTC	1 cut(s)	1444
PflMI	CCANNNNNTGG	2 cut(s)	229, 2033
PfoI	TCCNGGA	1 cut(s)	1999
PleI	GAGTC	1 cut(s)	152
PmaCI	CACGTG	1 cut(s)	1985
PmlI	CACGTG	1 cut(s)	1985
PpsI	GAGTC	1 cut(s)	152
Ppu21I	YACGTR	2 cut(s)	1985, 2030
PpuMI	RGGWCCY	1 cut(s)	425
PscI	ACATGT	1 cut(s)	2231
PsiI	TTATAA	1 cut(s)	477
Psp5II	RGGWCCY	1 cut(s)	425
Psp6I	CCWGG	8 cut(s)	102, 940, 1564, 1600, 1669, 1720, 1888, 1999
PspCI	CACGTG	1 cut(s)	1985
PspEI	GGTNACC	1 cut(s)	548
PspFI	CCCAGC	2 cut(s)	1223, 1237
PspGI	CCWGG	8 cut(s)	102, 940, 1564, 1600, 1669, 1720, 1888, 1999
PspN4I	GGNNCC	5 cut(s)	108, 234, 714, 1173, 1887
PspPI	GGNCC	7 cut(s)	72, 100, 425, 697, 1007, 1141, 2242
PspPPI	RGGWCCY	1 cut(s)	425
PspXI	VCTCGAGB	1 cut(s)	540
PsuI	RGATCY	3 cut(s)	106, 712, 1183
PsyI	GACNNNGTC	1 cut(s)	1444
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	6 cut(s)	849, 1295, 1459, 1588, 1620, 1887
RsaNI	GTAC	6 cut(s)	848, 1294, 1458, 1587, 1619, 1886
RseI	CAYNNNNRTG	2 cut(s)	1743, 2153
Rsr2I	CGGWCCG	1 cut(s)	72
RsrII	CGGWCCG	1 cut(s)	72
SapI	GCTCTTC	1 cut(s)	1933
SaqAI	TTAA	6 cut(s)	1023, 1151, 1260, 1683, 1707, 2196
Sau96I	GGNCC	7 cut(s)	72, 100, 425, 697, 1007, 1141, 2242
ScaI	AGTACT	1 cut(s)	1295
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	8 cut(s)	104, 942, 1566, 1602, 1671, 1722, 1890, 2001
SduI	GDGCHC	3 cut(s)	214, 1032, 1558
SexAI	ACCWGGT	1 cut(s)	1888
SfaNI	GCATC	8 cut(s)	95, 361, 598, 655, 736, 1210, 1291, 1399
SfcI	CTRYAG	2 cut(s)	784, 1201
Sfr274I	CTCGAG	1 cut(s)	540
SinI	GGWCC	4 cut(s)	72, 425, 697, 2242
SlaI	CTCGAG	1 cut(s)	540
SmiMI	CAYNNNNRTG	2 cut(s)	1743, 2153
SmlI	CTYRAG	2 cut(s)	540, 2246
SmoI	CTYRAG	2 cut(s)	540, 2246
SpeI	ACTAGT	2 cut(s)	497, 850
SseBI	AGGCCT	2 cut(s)	192, 1135
SsiI	CCGC	9 cut(s)	6, 75, 84, 134, 137, 177, 183, 246, 757
SspI	AATATT	1 cut(s)	1380
SspMI	CTAG	5 cut(s)	438, 498, 753, 851, 1431
StuI	AGGCCT	2 cut(s)	192, 1135
StyD4I	CCNGG	8 cut(s)	102, 940, 1564, 1600, 1669, 1720, 1888, 1999
StyI	CCWWGG	3 cut(s)	228, 603, 716
TaaI	ACNGT	6 cut(s)	274, 737, 893, 1428, 1444, 1462
TaiI	ACGT	4 cut(s)	1976, 1987, 2032, 2220
TaqI	TCGA	7 cut(s)	156, 541, 967, 1076, 1123, 1423, 2128
TaqII	GACCGA	1 cut(s)	2058
TatI	WGTACW	4 cut(s)	847, 1293, 1457, 1618
TauI	GCSGC	5 cut(s)	8, 139, 185, 248, 759
TfiI	GAWTC	2 cut(s)	433, 840
Tru1I	TTAA	6 cut(s)	1023, 1151, 1260, 1683, 1707, 2196
Tru9I	TTAA	6 cut(s)	1023, 1151, 1260, 1683, 1707, 2196
TscAI	CASTG	6 cut(s)	277, 742, 837, 1327, 1449, 2217
TseFI	GTSAC	3 cut(s)	548, 1969, 2113
TseI	GCWGC	5 cut(s)	179, 281, 533, 1943, 2264
Tsp45I	GTSAC	3 cut(s)	548, 1969, 2113
TspDTI	ATGAA	4 cut(s)	518, 686, 1727, 2004
TspGWI	ACGGA	2 cut(s)	118, 1049
TspRI	CASTG	6 cut(s)	277, 742, 837, 1327, 1449, 2217
Tth111I	GACNNNGTC	1 cut(s)	1444
Van91I	CCANNNNNTGG	2 cut(s)	229, 2033
VneI	GTGCAC	1 cut(s)	1554
VpaK11BI	GGWCC	4 cut(s)	72, 425, 697, 2242
XapI	RAATTY	3 cut(s)	1054, 1539, 2009
XbaI	TCTAGA	1 cut(s)	1430
XceI	RCATGY	1 cut(s)	2235
XcmI	CCANNNNNNNNNTGG	2 cut(s)	226, 610
XhoI	CTCGAG	1 cut(s)	540
XspI	CTAG	5 cut(s)	438, 498, 753, 851, 1431
ZraI	GACGTC	1 cut(s)	2218
ZrmI	AGTACT	1 cut(s)	1295
Zsp2I	ATGCAT	2 cut(s)	1216, 1750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.