Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005950

Physical Location & Seq

Genomic Coordinates Forward (+)

4483841 .. 4486410

Gene Structure 2570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g07660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGAGAGAGATGGATGTTGAAGCAAAAGGTATTGATCAGAAGGAAAAGGATCTGAATGACTGGCTTCCCATCACAAGTAATAGGAATGCAAGCTGGTGGTACTCTGCTTTCCATAATGTCACCGCCATGGTTGGTGCTGGTGTGCTTGGTCTTCCCTTTGCCATGTCTCAACTTGGATGGGGACCTGGAGTCACTGTGATGGTTCTGTCATGGATTATCACCCTATACACCTTATGGCAGATGGTAGAGATGCATGAGTCGGTACCGGGGAAGAGGTTTGATAGGTACCATGAGTTGGGTCAACATGCCTTTGGAGAGAAGCTAGGCCTTTGGATTGTGGTGCCACAGCAACTAATGGTGCAATTTGGTGTGTGCATTGTCTATATGATTACTGGTGGTAAATCACTGCAGAAGATCCATGATACTGTTGCCCCTGGAAAACCAATCAAAACCACCTACTTCATCATGATCTTTGCTGCTGTCCACTTTTTTATCTCTCACCTTCCTAGCTTCAATTCCATTGCTGGTATTTCTCTTGCTGCAGCTATCATGTCCTTGAGCTACTCTACAGTTGCCTGGGGAGCTTCACTTCACAAAGGGGTTCAACCATTGGTGCAGTATGGCCCCAGGGCTTCAACCACCGCAGGAAATGTGTTCAACTTCTTTAGTGCTTTGGGAGATGTAGCTTTTGCTTTTGCTGGTCACAATGTGGTTTTGGAGATTCAAGCAACAATTCCTTCTACACCTGACAAGCCCTCCAAAAAACCAATGTGGAAGGGTGTGATGCTTGCATACCTTGTGGTGGCTTTGTGCTATTTTCCAGTTGCTCTTATCGGTTATTGGGTGTTCGGAAACAGTGTTCAGGATAACATCCTCATATCATTGGAGAAACCTAAGTGGCTTATTGTTATTGCTAATGCCTTTGTTGTTATTCATGTCATTGGAAGTTATCAGGTCTTTGCCATGCCGGTGTTTGACACAATAGAATCAGCTCTAGTGAAACAGATGAAGTTCAAACCATCTTATTCTCTTCGCTTTATATCACGAAATATATTTGTTGCATTGACCTTGTTCATCGGAGTCACATTCCCTTTCTTCGGTGGGCTTCTCAGTTTCTTTGGAGGATTTGCTTTTGCTCCCACAACATACTTTCTTCCTTGCATCATGTGGCTTGCCGTCTACAAACCTAAGAAGTTCAGCTTATCCTGGTTTGCAAATTGGTTCTGCATTATAGTTGGAGTGTTATTGATGGTTTTAGCTCCTATTGGTGCATTGAGGAATATCATACTTCAAGCCAAGGATTTCAAATTCTACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

440

Amino Acids

48.94

Weight (kDa)

9.36

Isoelectric Point (pI)

31.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	29 - 424	4.2e-110	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	33 - 166	1.5e-09	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005950)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07660
malus_domestica	MD06G1148600.v1.1 MD14G1162700.v1.1
prunus_persica	Prupe.5G155600_v2.0.a1 Prupe.5G155600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380391 RchiOBHm_Chr5g0057301 RchiOBHm_Chr7g0190811
rosa_laevigata	RLG00000004492 RLG00000004494 RLG00000026307
rosa_multiflora	Rmu_sc0001334.1_g000017 Rmu_sc0005371.1_g000002
rosa_roxburghii	Rroxscaffold_3G00264280 Rroxscaffold_4G00279430
rosa_rugosa	Rorug01G0420300 Rorug01G0420400 Rorug01G0420500 Rorug06G0507300
rosa_samantha	Rh1BG399900 Rh1CG414600 Rh7AG113900 Rh7BG116500 Rh7CG119200
rosa_wichuraiana	Rw1G038710 Rw5G035360 Rw7G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	262, 285
AccB1I	GGYRCC	3 cut(s)	262, 285, 340
AccB7I	CCANNNNNTGG	1 cut(s)	295
AccI	GTMKAC	1 cut(s)	1179
AciI	CCGC	2 cut(s)	123, 642
AclWI	GGATC	2 cut(s)	57, 409
AcsI	RAATTY	1 cut(s)	1307
AdeI	CACNNNGTG	1 cut(s)	709
AfaI	GTAC	3 cut(s)	101, 264, 287
AfiI	CCNNNNNNNGG	3 cut(s)	295, 802, 1097
AgsI	TTSAA	9 cut(s)	20, 514, 605, 636, 658, 725, 1015, 1292, 1306
AhdI	GACNNNNNGTC	1 cut(s)	188
AjnI	CCWGG	5 cut(s)	184, 433, 575, 626, 1205
AloI	GAACNNNNNNTCC	2 cut(s)	843, 875
Alw26I	GTCTC	1 cut(s)	171
AlwI	GGATC	2 cut(s)	57, 409
AoxI	GGCC	2 cut(s)	325, 622
ApeKI	GCWGC	3 cut(s)	476, 539, 542
ApoI	RAATTY	1 cut(s)	1307
Asp718I	GGTACC	2 cut(s)	262, 285
AspS9I	GGNCC	2 cut(s)	182, 623
AsuC2I	CCSGG	1 cut(s)	267
AsuHPI	GGTGA	3 cut(s)	112, 211, 491
AvaII	GGWCC	1 cut(s)	182
BanI	GGYRCC	3 cut(s)	262, 285, 340
BbsI	GAAGAC	1 cut(s)	143
BbvI	GCAGC	3 cut(s)	463, 526, 554
BccI	CCATC	7 cut(s)	4, 77, 171, 193, 235, 1027, 1243
BceAI	ACGGC	1 cut(s)	1160
BciT130I	CCWGG	5 cut(s)	186, 435, 577, 628, 1207
BclI	TGATCA	1 cut(s)	34
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	171
BfaI	CTAG	3 cut(s)	323, 507, 995
BfmI	CTRYAG	3 cut(s)	407, 540, 567
BisI	GCNGC	3 cut(s)	477, 540, 543
BlsI	GCNGC	3 cut(s)	478, 541, 544
Bme1390I	CCNGG	6 cut(s)	186, 267, 435, 577, 628, 1207
Bme18I	GGWCC	1 cut(s)	182
BmeRI	GACNNNNNGTC	1 cut(s)	188
BmgT120I	GGNCC	2 cut(s)	182, 623
BmiI	GGNNCC	5 cut(s)	183, 264, 287, 342, 625
BmrFI	CCNGG	6 cut(s)	186, 267, 435, 577, 628, 1207
BmsI	GCATC	3 cut(s)	240, 774, 1170
BpiI	GAAGAC	1 cut(s)	143
BpmI	CTGGAG	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	577
BpuMI	CCSGG	1 cut(s)	267
BsaJI	CCNNGG	7 cut(s)	126, 266, 433, 576, 626, 627, 1296
BsaXI	ACNNNNNCTCC	4 cut(s)	180, 210, 740, 770
Bsc4I	CCNNNNNNNGG	3 cut(s)	295, 802, 1097
Bse118I	RCCGGY	1 cut(s)	967
Bse1I	ACTGG	3 cut(s)	65, 397, 821
Bse3DI	GCAATG	1 cut(s)	519
BseBI	CCWGG	5 cut(s)	186, 435, 577, 628, 1207
BseDI	CCNNGG	7 cut(s)	126, 266, 433, 576, 626, 627, 1296
BseGI	GGATG	3 cut(s)	19, 182, 870
BseLI	CCNNNNNNNGG	3 cut(s)	295, 802, 1097
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	1 cut(s)	1123
BseNI	ACTGG	3 cut(s)	65, 397, 821
BseXI	GCAGC	3 cut(s)	463, 526, 554
BsgI	GTGCAG	1 cut(s)	635
BshFI	GGCC	2 cut(s)	327, 624
BshNI	GGYRCC	3 cut(s)	262, 285, 340
BsiSI	CCGG	2 cut(s)	266, 968
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	3 cut(s)	295, 802, 1097
BsmAI	GTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	195
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	2 cut(s)	327, 624
Bsp143I	GATC	4 cut(s)	34, 49, 414, 468
Bsp19I	CCATGG	1 cut(s)	126
BspACI	CCGC	2 cut(s)	123, 642
BspANI	GGCC	2 cut(s)	327, 624
BspCNI	CTCAG	1 cut(s)	1122
BspHI	TCATGA	1 cut(s)	465
BspLI	GGNNCC	5 cut(s)	183, 264, 287, 342, 625
BspMAI	CTGCAG	2 cut(s)	411, 544
BspPI	GGATC	2 cut(s)	57, 409
BspT107I	GGYRCC	3 cut(s)	262, 285, 340
BsrDI	GCAATG	1 cut(s)	519
BsrFI	RCCGGY	1 cut(s)	967
BsrI	ACTGG	3 cut(s)	65, 397, 821
BssAI	RCCGGY	1 cut(s)	967
BssECI	CCNNGG	7 cut(s)	126, 266, 433, 576, 626, 627, 1296
BssMI	GATC	4 cut(s)	34, 49, 414, 468
BssT1I	CCWWGG	2 cut(s)	126, 1296
Bst2UI	CCWGG	5 cut(s)	186, 435, 577, 628, 1207
Bst4CI	ACNGT	4 cut(s)	196, 427, 571, 857
Bst6I	CTCTTC	2 cut(s)	266, 1035
BstC8I	GCNNGC	3 cut(s)	91, 789, 1173
BstDEI	CTNAG	3 cut(s)	894, 1109, 1188
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	3 cut(s)	19, 182, 870
BstKTI	GATC	4 cut(s)	37, 52, 417, 471
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	4 cut(s)	34, 49, 414, 468
BstMWI	GCNNNNNNNGC	1 cut(s)	581
BstNI	CCWGG	5 cut(s)	186, 435, 577, 628, 1207
BstNSI	RCATGY	1 cut(s)	308
BstSCI	CCNGG	6 cut(s)	184, 265, 433, 575, 626, 1205
BstSFI	CTRYAG	3 cut(s)	407, 540, 567
BstV1I	GCAGC	3 cut(s)	463, 526, 554
BstV2I	GAAGAC	1 cut(s)	143
BstX2I	RGATCY	2 cut(s)	49, 414
BstYI	RGATCY	2 cut(s)	49, 414
BsuRI	GGCC	2 cut(s)	327, 624
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	3 cut(s)	19, 182, 870
BtsI	GCAGTG	1 cut(s)	404
BtsIMutI	CAGTG	3 cut(s)	192, 404, 862
Cac8I	GCNNGC	3 cut(s)	91, 789, 1173
CciI	TCATGA	1 cut(s)	465
Cfr10I	RCCGGY	1 cut(s)	967
Cfr13I	GGNCC	2 cut(s)	182, 623
Csp6I	GTAC	3 cut(s)	100, 263, 286
CviQI	GTAC	3 cut(s)	100, 263, 286
DdeI	CTNAG	3 cut(s)	894, 1109, 1188
DpnI	GATC	4 cut(s)	36, 51, 416, 470
DpnII	GATC	4 cut(s)	34, 49, 414, 468
DraIII	CACNNNGTG	1 cut(s)	709
DriI	GACNNNNNGTC	1 cut(s)	188
Eam1104I	CTCTTC	2 cut(s)	266, 1035
Eam1105I	GACNNNNNGTC	1 cut(s)	188
EarI	CTCTTC	2 cut(s)	266, 1035
Eco130I	CCWWGG	2 cut(s)	126, 1296
Eco147I	AGGCCT	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	182
EcoRII	CCWGG	5 cut(s)	184, 433, 575, 626, 1205
EcoT14I	CCWWGG	2 cut(s)	126, 1296
EcoT22I	ATGCAT	1 cut(s)	255
ErhI	CCWWGG	2 cut(s)	126, 1296
FalI	AAGNNNNNCTT	2 cut(s)	1184, 1216
FaqI	GGGAC	1 cut(s)	195
FbaI	TGATCA	1 cut(s)	34
FblI	GTMKAC	1 cut(s)	1179
Fnu4HI	GCNGC	3 cut(s)	477, 540, 543
FokI	GGATG	3 cut(s)	26, 189, 857
Fsp4HI	GCNGC	3 cut(s)	477, 540, 543
FspBI	CTAG	3 cut(s)	323, 507, 995
GluI	GCNGC	3 cut(s)	477, 540, 543
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	327, 624
HapII	CCGG	2 cut(s)	266, 968
HincII	GTYRAC	1 cut(s)	302
HindII	GTYRAC	1 cut(s)	302
HinfI	GANTC	5 cut(s)	189, 257, 721, 986, 1080
HpaII	CCGG	2 cut(s)	266, 968
HphI	GGTGA	3 cut(s)	112, 211, 491
Hpy166II	GTNNAC	3 cut(s)	302, 484, 1180
Hpy188I	TCNGA	4 cut(s)	39, 54, 851, 1079
Hpy188III	TCNNGA	4 cut(s)	466, 863, 1044, 1317
Hpy8I	GTNNAC	3 cut(s)	302, 484, 1180
HpyAV	CCTTC	4 cut(s)	34, 512, 747, 769
HpyCH4III	ACNGT	4 cut(s)	196, 427, 571, 857
HpyF10VI	GCNNNNNNNGC	1 cut(s)	581
HpyF3I	CTNAG	3 cut(s)	894, 1109, 1188
KpnI	GGTACC	2 cut(s)	266, 289
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	4 cut(s)	34, 49, 414, 468
LmnI	GCTCC	3 cut(s)	581, 1141, 1264
Lsp1109I	GCAGC	3 cut(s)	463, 526, 554
LweI	GCATC	3 cut(s)	240, 774, 1170
MaeI	CTAG	3 cut(s)	323, 507, 995
MaeIII	GTNAC	4 cut(s)	118, 190, 701, 1081
MalI	GATC	4 cut(s)	36, 51, 416, 470
MboI	GATC	4 cut(s)	34, 49, 414, 468
MboII	GAAGA	6 cut(s)	143, 283, 424, 1022, 1087, 1145
MflI	RGATCY	2 cut(s)	49, 414
MluCI	AATT	5 cut(s)	362, 514, 732, 1216, 1307
MlyI	GAGTC	3 cut(s)	198, 266, 1089
MmeI	TCCRAC	1 cut(s)	1216
MnlI	CCTC	5 cut(s)	267, 766, 884, 1115, 1269
Mph1103I	ATGCAT	1 cut(s)	255
MslI	CAYNNNNRTG	3 cut(s)	125, 197, 968
MspI	CCGG	2 cut(s)	266, 968
MspR9I	CCNGG	6 cut(s)	186, 267, 435, 577, 628, 1207
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	5 cut(s)	186, 435, 577, 628, 1207
MwoI	GCNNNNNNNGC	1 cut(s)	581
NciI	CCSGG	1 cut(s)	267
NcoI	CCATGG	1 cut(s)	126
NdeII	GATC	4 cut(s)	34, 49, 414, 468
NlaIV	GGNNCC	5 cut(s)	183, 264, 287, 342, 625
NmuCI	GTSAC	4 cut(s)	118, 190, 701, 1081
NsiI	ATGCAT	1 cut(s)	255
NspI	RCATGY	1 cut(s)	308
PagI	TCATGA	1 cut(s)	465
PasI	CCCWGGG	1 cut(s)	627
PceI	AGGCCT	1 cut(s)	327
PctI	GAATGC	1 cut(s)	91
PfeI	GAWTC	2 cut(s)	721, 986
PflMI	CCANNNNNTGG	1 cut(s)	295
PkrI	GCNGC	3 cut(s)	478, 541, 544
PleI	GAGTC	3 cut(s)	197, 265, 1088
PpsI	GAGTC	3 cut(s)	197, 265, 1088
PpuMI	RGGWCCY	1 cut(s)	182
Psp5II	RGGWCCY	1 cut(s)	182
Psp6I	CCWGG	5 cut(s)	184, 433, 575, 626, 1205
PspGI	CCWGG	5 cut(s)	184, 433, 575, 626, 1205
PspN4I	GGNNCC	5 cut(s)	183, 264, 287, 342, 625
PspPI	GGNCC	2 cut(s)	182, 623
PspPPI	RGGWCCY	1 cut(s)	182
PstI	CTGCAG	2 cut(s)	411, 544
PsuI	RGATCY	2 cut(s)	49, 414
RsaI	GTAC	3 cut(s)	101, 264, 287
RsaNI	GTAC	3 cut(s)	100, 263, 286
RseI	CAYNNNNRTG	3 cut(s)	125, 197, 968
SatI	GCNGC	3 cut(s)	477, 540, 543
Sau3AI	GATC	4 cut(s)	34, 49, 414, 468
Sau96I	GGNCC	2 cut(s)	182, 623
SchI	GAGTC	3 cut(s)	198, 266, 1089
ScrFI	CCNGG	6 cut(s)	186, 267, 435, 577, 628, 1207
SfaNI	GCATC	3 cut(s)	240, 774, 1170
SfcI	CTRYAG	3 cut(s)	407, 540, 567
SinI	GGWCC	1 cut(s)	182
SmiMI	CAYNNNNRTG	3 cut(s)	125, 197, 968
SmlI	CTYRAG	1 cut(s)	556
SmoI	CTYRAG	1 cut(s)	556
Sse9I	AATT	5 cut(s)	362, 514, 732, 1216, 1307
SseBI	AGGCCT	1 cut(s)	327
SsiI	CCGC	2 cut(s)	123, 642
SspMI	CTAG	3 cut(s)	323, 507, 995
StuI	AGGCCT	1 cut(s)	327
StyD4I	CCNGG	6 cut(s)	184, 265, 433, 575, 626, 1205
StyI	CCWWGG	2 cut(s)	126, 1296
TaaI	ACNGT	4 cut(s)	196, 427, 571, 857
TasI	AATT	5 cut(s)	362, 514, 732, 1216, 1307
TfiI	GAWTC	2 cut(s)	721, 986
TscAI	CASTG	3 cut(s)	199, 411, 862
TseFI	GTSAC	4 cut(s)	118, 190, 701, 1081
TseI	GCWGC	3 cut(s)	476, 539, 542
Tsp45I	GTSAC	4 cut(s)	118, 190, 701, 1081
TspDTI	ATGAA	4 cut(s)	451, 923, 1022, 1063
TspRI	CASTG	3 cut(s)	199, 411, 862
Van91I	CCANNNNNTGG	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	182
XapI	RAATTY	1 cut(s)	1307
XceI	RCATGY	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	1179
XspI	CTAG	3 cut(s)	323, 507, 995
Zsp2I	ATGCAT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.