Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0005950

Physical Location & Seq

Genomic Coordinates Forward (+)

25704813 .. 25708035

Gene Structure 3223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1162700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGGAGGAAGTGGAGAAATTAGAGAGGAGCAGCAGCAGAAGGAGGTGCAAGATATCAACGACTGGCTGCCGATCACGAAATCGAGGAACGCGACGTGGTGGTATTCTGCATTCCACAATGTCACTGCCATGGTTGGTGCTGGTGTTCTTGGCCTCCCCTATGCCATGTCTCACCTTGGATGGGGCCCTGGAGTAGCAGTGCTGGTTCTCTCATGGATAATTACACTCTACACCTTATGGCAGATGGTAGAAATGCATGAAATTGTACCTGGCAAGAGGTTTGATAGGTACCACGAGTTAGGGCAACATGCCTTTGGGGAAAAACTAGGGCTTTACATTGTGGTGCCCCAGCAACTGATGGTGGAAGTTGGGACTTGCATAGTGTATATGATTACAGGTGGCAATTCCTTGAAGAAGATTCACAGTACTGTGTGCCCTGACTGTAAGCCTATCAAAACCACCTACTTCATCATGATCTTTGCATCGGTTCACTTTGTTCTCTCCCACCTCCCTAGCCTCAATTCCATTGCTAGTGTTTCTCTTGCTGCTGCTGTCATGTCATTGAGCTACTCTACCATTGCTTGGGGAGCTTCTCTGCACAAAGGGGTGGAGTCACAAGTGCAGTATGGTCCCAGGGCTTCAACCGCTGCAGGGAATACATTCAACTTCTTTAGTGCTTTGGGAGATGTAGCTTTTGCTTTTGCTGGTCACAATGTGGTTTTGGAGATTCAAGCAACGATTCCTTCCACGCCCGAAAAGCCGTCAAAAAAACCCATGTGGAAGGGGGTGGTTCTTGCTTACATTGTGGTCGCACTGTGCTATCTCCCCGTTGCTCTCATCGGATACTGGGTGTTTGGAAACCACGTCGAGGATAACATCCTCATATCGTTGGAGAAGCCTGCTTGGCTTATTGTTCTTGCCAATTGCTTTGTTGTTGTTCATGTCATTGGAAGTTATCAGGTCTACGCCATGCCGGTGTTTGACATGGCGGAATTATTTCTGTTGAAGAAGATGAAATTCAAGCCATCTTTGTTCCTTCGCTTCATAACACGTAATGTGATTGTTGCATTCACCTTGTTCGTTGGGATTACATTCCCCTTCTTTGGCGGGCTTCTCGGTTTCTTCGGAGGATTTGCTTTTGCTCCTACAACATACTATCTCCCTTGCATCATGTGGCTTGTCATCTGCAAACCAAAGAAGTTTGGCCTTTCCTGGTTTGCAAATTGGTTCTGCATCATAGTTGGAGTGTCACTGATGCTTTTAGCTCCGATCGGCGCATTAAGGAATCTCATACTTCAAGCTAAGAACTTCAAATTCTACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

442

Amino Acids

49.02

Weight (kDa)

9.03

Isoelectric Point (pI)

31.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	30 - 426	2.7e-109	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	41 - 169	3.9e-08	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005950)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07660
malus_domestica	MD06G1148600.v1.1 MD14G1162700.v1.1
prunus_persica	Prupe.5G155600_v2.0.a1 Prupe.5G155600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380391 RchiOBHm_Chr5g0057301 RchiOBHm_Chr7g0190811
rosa_laevigata	RLG00000004492 RLG00000004494 RLG00000026307
rosa_multiflora	Rmu_sc0001334.1_g000017 Rmu_sc0005371.1_g000002
rosa_roxburghii	Rroxscaffold_3G00264280 Rroxscaffold_4G00279430
rosa_rugosa	Rorug01G0420300 Rorug01G0420400 Rorug01G0420500 Rorug06G0507300
rosa_samantha	Rh1BG399900 Rh1CG414600 Rh7AG113900 Rh7BG116500 Rh7CG119200
rosa_wichuraiana	Rw1G038710 Rw5G035360 Rw7G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	288
AccB1I	GGYRCC	2 cut(s)	288, 343
AccB7I	CCANNNNNTGG	1 cut(s)	582
AccI	GTMKAC	1 cut(s)	963
AccII	CGCG	1 cut(s)	92
AciI	CCGC	3 cut(s)	645, 989, 1107
AcsI	RAATTY	2 cut(s)	1016, 1313
AdeI	CACNNNGTG	1 cut(s)	715
AfaI	GTAC	3 cut(s)	267, 290, 427
AfiI	CCNNNNNNNGG	5 cut(s)	181, 582, 651, 868, 1103
AflIII	ACRYGT	1 cut(s)	1049
AgsI	TTSAA	8 cut(s)	412, 642, 664, 731, 1006, 1021, 1298, 1312
AjiI	CACGTC	2 cut(s)	96, 865
AjnI	CCWGG	4 cut(s)	187, 268, 632, 1211
AluBI	AGCT	5 cut(s)	567, 590, 692, 1265, 1301
AluI	AGCT	5 cut(s)	567, 590, 692, 1265, 1301
Alw26I	GTCTC	1 cut(s)	174
AlwNI	CAGNNNCTG	1 cut(s)	355
AoxI	GGCC	3 cut(s)	151, 184, 1204
ApaI	GGGCCC	1 cut(s)	188
ApeKI	GCWGC	6 cut(s)	31, 34, 67, 545, 548, 647
ApoI	RAATTY	2 cut(s)	1016, 1313
Asp700I	GAANNNNTTC	2 cut(s)	659, 996
Asp718I	GGTACC	1 cut(s)	288
AspLEI	GCGC	1 cut(s)	1277
AspS9I	GGNCC	3 cut(s)	184, 185, 629
AsuHPI	GGTGA	2 cut(s)	164, 1063
AvaII	GGWCC	1 cut(s)	629
BaeGI	GKGCMC	3 cut(s)	188, 348, 437
BanI	GGYRCC	2 cut(s)	288, 343
BanII	GRGCYC	1 cut(s)	188
BauI	CACGAG	1 cut(s)	293
BbvI	GCAGC	6 cut(s)	43, 46, 54, 532, 535, 634
BccI	CCATC	4 cut(s)	174, 238, 352, 1033
BceAI	ACGGC	1 cut(s)	745
BciT130I	CCWGG	4 cut(s)	189, 270, 634, 1213
BciVI	GTATCC	1 cut(s)	836
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	3 cut(s)	326, 513, 531
BfmI	CTRYAG	1 cut(s)	648
BfuI	GTATCC	1 cut(s)	836
BglI	GCCNNNNNGGC	1 cut(s)	904
BisI	GCNGC	6 cut(s)	32, 35, 68, 546, 549, 648
BlsI	GCNGC	6 cut(s)	33, 36, 69, 547, 550, 649
BmcAI	AGTACT	1 cut(s)	427
Bme1390I	CCNGG	4 cut(s)	189, 270, 634, 1213
Bme18I	GGWCC	1 cut(s)	629
BmgBI	CACGTC	2 cut(s)	96, 865
BmgT120I	GGNCC	3 cut(s)	184, 185, 629
BmiI	GGNNCC	5 cut(s)	185, 186, 290, 345, 631
BmrFI	CCNGG	4 cut(s)	189, 270, 634, 1213
BmrI	ACTGGG	1 cut(s)	856
BmsI	GCATC	4 cut(s)	491, 1176, 1242, 1245
BmuI	ACTGGG	1 cut(s)	856
BpmI	CTGGAG	1 cut(s)	210
BsaAI	YACGTR	1 cut(s)	1052
BsaJI	CCNNGG	5 cut(s)	129, 175, 187, 632, 633
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bsc4I	CCNNNNNNNGG	5 cut(s)	181, 582, 651, 868, 1103
Bse118I	RCCGGY	1 cut(s)	973
Bse1I	ACTGG	2 cut(s)	68, 851
Bse3DI	GCAATG	2 cut(s)	525, 576
BseBI	CCWGG	4 cut(s)	189, 270, 634, 1213
BseDI	CCNNGG	5 cut(s)	129, 175, 187, 632, 633
BseGI	GGATG	2 cut(s)	185, 876
BseLI	CCNNNNNNNGG	5 cut(s)	181, 582, 651, 868, 1103
BseMI	GCAATG	2 cut(s)	525, 576
BseNI	ACTGG	2 cut(s)	68, 851
BseRI	GAGGAG	1 cut(s)	41
BseSI	GKGCMC	3 cut(s)	188, 348, 437
BseXI	GCAGC	6 cut(s)	43, 46, 54, 532, 535, 634
BseYI	CCCAGC	1 cut(s)	348
BsgI	GTGCAG	2 cut(s)	581, 641
Bsh1236I	CGCG	1 cut(s)	92
Bsh1285I	CGRYCG	1 cut(s)	1272
BshFI	GGCC	3 cut(s)	153, 186, 1206
BshNI	GGYRCC	2 cut(s)	288, 343
BsiEI	CGRYCG	1 cut(s)	1272
BsiSI	CCGG	1 cut(s)	974
BslFI	GGGAC	2 cut(s)	385, 615
BslI	CCNNNNNNNGG	5 cut(s)	181, 582, 651, 868, 1103
BsmAI	GTCTC	1 cut(s)	174
BsmFI	GGGAC	2 cut(s)	385, 615
BsmI	GAATGC	2 cut(s)	110, 1067
BsnI	GGCC	3 cut(s)	153, 186, 1206
Bsp120I	GGGCCC	1 cut(s)	184
Bsp1286I	GDGCHC	3 cut(s)	188, 348, 437
Bsp143I	GATC	3 cut(s)	72, 474, 1269
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	3 cut(s)	645, 989, 1107
BspANI	GGCC	3 cut(s)	153, 186, 1206
BspFNI	CGCG	1 cut(s)	92
BspHI	TCATGA	1 cut(s)	471
BspLI	GGNNCC	5 cut(s)	185, 186, 290, 345, 631
BspMAI	CTGCAG	1 cut(s)	652
BspT107I	GGYRCC	2 cut(s)	288, 343
BsrDI	GCAATG	2 cut(s)	525, 576
BsrFI	RCCGGY	1 cut(s)	973
BsrI	ACTGG	2 cut(s)	68, 851
BssAI	RCCGGY	1 cut(s)	973
BssECI	CCNNGG	5 cut(s)	129, 175, 187, 632, 633
BssMI	GATC	3 cut(s)	72, 474, 1269
BssSI	CACGAG	1 cut(s)	293
BssT1I	CCWWGG	2 cut(s)	129, 175
Bst2BI	CACGAG	1 cut(s)	293
Bst2UI	CCWGG	4 cut(s)	189, 270, 634, 1213
Bst4CI	ACNGT	4 cut(s)	425, 430, 443, 816
BstBAI	YACGTR	1 cut(s)	1052
BstC8I	GCNNGC	2 cut(s)	900, 1109
BstDEI	CTNAG	1 cut(s)	1302
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	185, 876
BstFNI	CGCG	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	1277
BstKTI	GATC	3 cut(s)	75, 477, 1272
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	3 cut(s)	72, 474, 1269
BstMCI	CGRYCG	1 cut(s)	1272
BstMWI	GCNNNNNNNGC	4 cut(s)	587, 644, 757, 904
BstNI	CCWGG	4 cut(s)	189, 270, 634, 1213
BstNSI	RCATGY	1 cut(s)	311
BstSCI	CCNGG	4 cut(s)	187, 268, 632, 1211
BstSFI	CTRYAG	1 cut(s)	648
BstSLI	GKGCMC	3 cut(s)	188, 348, 437
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	6 cut(s)	43, 46, 54, 532, 535, 634
BsuI	GTATCC	1 cut(s)	836
BsuRI	GGCC	3 cut(s)	153, 186, 1206
BtgI	CCRYGG	1 cut(s)	129
BtrI	CACGTC	2 cut(s)	96, 865
BtsCI	GGATG	2 cut(s)	185, 876
BtsI	GCAGTG	2 cut(s)	123, 204
BtsIMutI	CAGTG	4 cut(s)	123, 204, 812, 1250
Cac8I	GCNNGC	2 cut(s)	900, 1109
CaiI	CAGNNNCTG	1 cut(s)	355
CciI	TCATGA	1 cut(s)	471
CfoI	GCGC	1 cut(s)	1277
Cfr10I	RCCGGY	1 cut(s)	973
Cfr13I	GGNCC	3 cut(s)	184, 185, 629
Csp6I	GTAC	3 cut(s)	266, 289, 426
CviQI	GTAC	3 cut(s)	266, 289, 426
DdeI	CTNAG	1 cut(s)	1302
DpnI	GATC	3 cut(s)	74, 476, 1271
DpnII	GATC	3 cut(s)	72, 474, 1269
DraIII	CACNNNGTG	1 cut(s)	715
EciI	GGCGGA	1 cut(s)	1004
Eco130I	CCWWGG	2 cut(s)	129, 175
Eco24I	GRGCYC	1 cut(s)	188
Eco32I	GATATC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	629
EcoO109I	RGGNCCY	2 cut(s)	184, 185
EcoRII	CCWGG	4 cut(s)	187, 268, 632, 1211
EcoRV	GATATC	1 cut(s)	55
EcoT14I	CCWWGG	2 cut(s)	129, 175
EcoT22I	ATGCAT	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	188
ErhI	CCWWGG	2 cut(s)	129, 175
FaqI	GGGAC	2 cut(s)	385, 615
FauI	CCCGC	1 cut(s)	1100
FblI	GTMKAC	1 cut(s)	963
Fnu4HI	GCNGC	6 cut(s)	32, 35, 68, 546, 549, 648
FokI	GGATG	2 cut(s)	192, 863
FriOI	GRGCYC	1 cut(s)	188
Fsp4HI	GCNGC	6 cut(s)	32, 35, 68, 546, 549, 648
FspBI	CTAG	3 cut(s)	326, 513, 531
GlaI	GCGC	1 cut(s)	1276
GluI	GCNGC	6 cut(s)	32, 35, 68, 546, 549, 648
GsaI	CCCAGC	1 cut(s)	352
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	153, 186, 1206
HapII	CCGG	1 cut(s)	974
HhaI	GCGC	1 cut(s)	1277
Hin6I	GCGC	1 cut(s)	1275
HinP1I	GCGC	1 cut(s)	1275
HinfI	GANTC	5 cut(s)	418, 611, 727, 739, 1285
HpaII	CCGG	1 cut(s)	974
HphI	GGTGA	2 cut(s)	164, 1063
Hpy166II	GTNNAC	2 cut(s)	490, 964
Hpy188I	TCNGA	3 cut(s)	842, 1127, 1269
Hpy188III	TCNNGA	3 cut(s)	76, 472, 1323
Hpy8I	GTNNAC	2 cut(s)	490, 964
Hpy99I	CGWCG	2 cut(s)	97, 869
HpyAV	CCTTC	5 cut(s)	34, 753, 775, 1046, 1108
HpyCH4III	ACNGT	4 cut(s)	425, 430, 443, 816
HpyCH4IV	ACGT	3 cut(s)	95, 864, 1051
HpyF10VI	GCNNNNNNNGC	4 cut(s)	587, 644, 757, 904
HpyF3I	CTNAG	1 cut(s)	1302
HpySE526I	ACGT	3 cut(s)	95, 864, 1051
HspAI	GCGC	1 cut(s)	1275
KpnI	GGTACC	1 cut(s)	292
Kzo9I	GATC	3 cut(s)	72, 474, 1269
LmnI	GCTCC	4 cut(s)	28, 587, 1147, 1270
Lsp1109I	GCAGC	6 cut(s)	43, 46, 54, 532, 535, 634
LweI	GCATC	4 cut(s)	491, 1176, 1242, 1245
MaeI	CTAG	3 cut(s)	326, 513, 531
MaeII	ACGT	3 cut(s)	95, 864, 1051
MaeIII	GTNAC	4 cut(s)	121, 612, 707, 1248
MalI	GATC	3 cut(s)	74, 476, 1271
MboI	GATC	3 cut(s)	72, 474, 1269
MboII	GAAGA	5 cut(s)	424, 427, 1018, 1021, 1114
MfeI	CAATTG	1 cut(s)	922
MhlI	GDGCHC	3 cut(s)	188, 348, 437
MlyI	GAGTC	1 cut(s)	620
MmeI	TCCRAC	2 cut(s)	870, 1222
Mph1103I	ATGCAT	1 cut(s)	258
MroXI	GAANNNNTTC	2 cut(s)	659, 996
MseI	TTAA	1 cut(s)	1280
MslI	CAYNNNNRTG	3 cut(s)	128, 341, 974
MspA1I	CMGCKG	1 cut(s)	647
MspI	CCGG	1 cut(s)	974
MspR9I	CCNGG	4 cut(s)	189, 270, 634, 1213
MunI	CAATTG	1 cut(s)	922
Mva1269I	GAATGC	2 cut(s)	110, 1067
MvaI	CCWGG	4 cut(s)	189, 270, 634, 1213
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	4 cut(s)	587, 644, 757, 904
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	3 cut(s)	72, 474, 1269
NlaIV	GGNNCC	5 cut(s)	185, 186, 290, 345, 631
NmuCI	GTSAC	4 cut(s)	121, 612, 707, 1248
NsiI	ATGCAT	1 cut(s)	258
NspI	RCATGY	1 cut(s)	311
PagI	TCATGA	1 cut(s)	471
PasI	CCCWGGG	1 cut(s)	633
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PctI	GAATGC	2 cut(s)	110, 1067
PdmI	GAANNNNTTC	2 cut(s)	659, 996
PfeI	GAWTC	4 cut(s)	418, 727, 739, 1285
PflMI	CCANNNNNTGG	1 cut(s)	582
PkrI	GCNGC	6 cut(s)	33, 36, 69, 547, 550, 649
Ple19I	CGATCG	1 cut(s)	1272
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
Ppu21I	YACGTR	1 cut(s)	1052
Psp6I	CCWGG	4 cut(s)	187, 268, 632, 1211
PspFI	CCCAGC	1 cut(s)	348
PspGI	CCWGG	4 cut(s)	187, 268, 632, 1211
PspN4I	GGNNCC	5 cut(s)	185, 186, 290, 345, 631
PspOMI	GGGCCC	1 cut(s)	184
PspPI	GGNCC	3 cut(s)	184, 185, 629
PstI	CTGCAG	1 cut(s)	652
PstNI	CAGNNNCTG	1 cut(s)	355
PvuI	CGATCG	1 cut(s)	1272
RsaI	GTAC	3 cut(s)	267, 290, 427
RsaNI	GTAC	3 cut(s)	266, 289, 426
RseI	CAYNNNNRTG	3 cut(s)	128, 341, 974
SaqAI	TTAA	1 cut(s)	1280
SatI	GCNGC	6 cut(s)	32, 35, 68, 546, 549, 648
Sau3AI	GATC	3 cut(s)	72, 474, 1269
Sau96I	GGNCC	3 cut(s)	184, 185, 629
ScaI	AGTACT	1 cut(s)	427
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	4 cut(s)	189, 270, 634, 1213
SduI	GDGCHC	3 cut(s)	188, 348, 437
SfaNI	GCATC	4 cut(s)	491, 1176, 1242, 1245
SfcI	CTRYAG	1 cut(s)	648
SinI	GGWCC	1 cut(s)	629
SmiMI	CAYNNNNRTG	3 cut(s)	128, 341, 974
SsiI	CCGC	3 cut(s)	645, 989, 1107
SspMI	CTAG	3 cut(s)	326, 513, 531
StyD4I	CCNGG	4 cut(s)	187, 268, 632, 1211
StyI	CCWWGG	2 cut(s)	129, 175
TaaI	ACNGT	4 cut(s)	425, 430, 443, 816
TaiI	ACGT	3 cut(s)	98, 867, 1054
TaqI	TCGA	2 cut(s)	83, 867
TatI	WGTACW	1 cut(s)	425
TfiI	GAWTC	4 cut(s)	418, 727, 739, 1285
Tru1I	TTAA	1 cut(s)	1280
Tru9I	TTAA	1 cut(s)	1280
TscAI	CASTG	4 cut(s)	130, 204, 819, 1257
TseFI	GTSAC	4 cut(s)	121, 612, 707, 1248
TseI	GCWGC	6 cut(s)	31, 34, 67, 545, 548, 647
Tsp45I	GTSAC	4 cut(s)	121, 612, 707, 1248
TspDTI	ATGAA	5 cut(s)	273, 457, 929, 1028, 1033
TspRI	CASTG	4 cut(s)	130, 204, 819, 1257
Van91I	CCANNNNNTGG	1 cut(s)	582
VpaK11BI	GGWCC	1 cut(s)	629
XapI	RAATTY	2 cut(s)	1016, 1313
XceI	RCATGY	1 cut(s)	311
XmiI	GTMKAC	1 cut(s)	963
XmnI	GAANNNNTTC	2 cut(s)	659, 996
XspI	CTAG	3 cut(s)	326, 513, 531
ZrmI	AGTACT	1 cut(s)	427
Zsp2I	ATGCAT	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.