Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005950

Physical Location & Seq

Genomic Coordinates Reverse (-)

8901248 .. 8903903

Gene Structure 2656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG113900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGATATTGAAGCAAAAGGTATTGATCAGAAGGAAAAGGAGCTGAATGACTGGCTTCCCATCACAAGTTCTAGGACTGCAACCTGGTGGTACTCTGCTTTCCACAATGTCACTGCCATGGTTGGTGCTGGTGTGCTTGGTCTTCCCTTTGCCATGTCTCAACTTGGATGGGGACCTGGAGTCACTGTGATGGTTCTTTCATGGATTATCACCCTATACACCTTATGGCAGATGGTAGAGATGCATGAGTCTGTGCCGGGGAAGAGGTTTGACAGGTATCATGAGTTGGGTCAACATGCGTTCGGAGAAAAGCTAGGGCTTTGGATTGTGGTACCCCAACAACTAATGGTGCAATTTGGTGTCTGCATCGTCTATATGATTACAGGTGGTAAATCACTGCAGAAGATCCATGATACTGTGGCCCCCGGAAAACCAACCAAAACCACCTACTTCATCATGATCTTCGCCGCTGTCCACTTTTTTATCTCTCACCTCCGTAGCTTCAATTCCATTGCTGGTATTTCTCTTGCTGCAGCTGTCATGTCCTTGAGCTACTCTACAGTTGCTTGGGGAGCTTCACTTCACAAAGGGGTTCAACCAGAAGTACAGTATGGCCCCAGGGCTTCAACCACCACAGGAAATGTGTTCAATTTCTTTAGTGCTTTGGGAGATGTAGCTTTTGCTTTTGCCGGTCACAATGTGGTTTTGGAGATTCAAGCAACAATTCCTTCTACACCTGGCAAGCCCTCCAAAAAACCAATGTGGAAGGGTGTGATGCTTGCATATGTTGTGGTGGCTTTGTGCTATTTCCCAGTTGCTCTTATAGGTTATCGGGTATTCGGAAACAGTGTTCAGGATAACATCCTCCTATCATTGGAGAAACCAAAGTGGCTAATTGTTATTGCTAATGCCTTTGTTGTTATTCATGTGATTGGAAGTTATCAGGTCTTTGCAATGCCGGTGTTTGACACAATTGAAGCAGCTCTAGTGAGACAGATGAATTTCAAACCATCTTATTCTCTTCGCTTTATATCACGAAATCTATTTGTTGCTGGAGTGTTATTGCTGATTTTTGCTCCTATTGGTGCATTGAGGAATATCATACTTCAAGCCAAGGATTTCAAATTCTACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

378

Amino Acids

41.87

Weight (kDa)

9.41

Isoelectric Point (pI)

34.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	25 - 356	1.4e-89	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	37 - 161	3.5e-09	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005950)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07660
malus_domestica	MD06G1148600.v1.1 MD14G1162700.v1.1
prunus_persica	Prupe.5G155600_v2.0.a1 Prupe.5G155600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380391 RchiOBHm_Chr5g0057301 RchiOBHm_Chr7g0190811
rosa_laevigata	RLG00000004492 RLG00000004494 RLG00000026307
rosa_multiflora	Rmu_sc0001334.1_g000017 Rmu_sc0005371.1_g000002
rosa_roxburghii	Rroxscaffold_3G00264280 Rroxscaffold_4G00279430
rosa_rugosa	Rorug01G0420300 Rorug01G0420400 Rorug01G0420500 Rorug06G0507300
rosa_samantha	Rh1BG399900 Rh1CG414600 Rh7AG113900 Rh7BG116500 Rh7CG119200
rosa_wichuraiana	Rw1G038710 Rw5G035360 Rw7G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	331
AccB1I	GGYRCC	1 cut(s)	331
AciI	CCGC	1 cut(s)	468
AclWI	GGATC	1 cut(s)	400
AcsI	RAATTY	2 cut(s)	1000, 1124
AdeI	CACNNNGTG	1 cut(s)	700
AfaI	GTAC	3 cut(s)	92, 333, 606
AfiI	CCNNNNNNNGG	1 cut(s)	874
AhdI	GACNNNNNGTC	1 cut(s)	179
AjnI	CCWGG	4 cut(s)	83, 175, 617, 736
AloI	GAACNNNNNNTCC	2 cut(s)	834, 866
AluBI	AGCT	8 cut(s)	43, 313, 501, 536, 552, 575, 677, 983
AluI	AGCT	8 cut(s)	43, 313, 501, 536, 552, 575, 677, 983
Alw26I	GTCTC	2 cut(s)	162, 985
AlwI	GGATC	1 cut(s)	400
AoxI	GGCC	2 cut(s)	420, 613
ApeKI	GCWGC	3 cut(s)	530, 533, 980
ApoI	RAATTY	2 cut(s)	1000, 1124
Asp718I	GGTACC	1 cut(s)	331
AspS9I	GGNCC	3 cut(s)	173, 421, 614
AsuC2I	CCSGG	2 cut(s)	258, 426
AsuHPI	GGTGA	2 cut(s)	202, 482
AvaII	GGWCC	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	134
BbvI	GCAGC	3 cut(s)	517, 545, 992
BccI	CCATC	5 cut(s)	68, 162, 184, 226, 1018
BciT130I	CCWGG	4 cut(s)	85, 177, 619, 738
BclI	TGATCA	1 cut(s)	25
BcnI	CCSGG	2 cut(s)	258, 426
BcoDI	GTCTC	2 cut(s)	162, 985
BfaI	CTAG	3 cut(s)	72, 314, 986
BfmI	CTRYAG	3 cut(s)	398, 531, 558
BisI	GCNGC	4 cut(s)	468, 531, 534, 981
BlsI	GCNGC	4 cut(s)	469, 532, 535, 982
Bme1390I	CCNGG	6 cut(s)	85, 177, 258, 426, 619, 738
Bme18I	GGWCC	1 cut(s)	173
BmeRI	GACNNNNNGTC	1 cut(s)	179
BmgT120I	GGNCC	3 cut(s)	173, 421, 614
BmiI	GGNNCC	4 cut(s)	174, 333, 423, 616
BmrFI	CCNGG	6 cut(s)	85, 177, 258, 426, 619, 738
BmrI	ACTGGG	1 cut(s)	806
BmsI	GCATC	3 cut(s)	231, 375, 765
BmuI	ACTGGG	1 cut(s)	806
BpiI	GAAGAC	1 cut(s)	134
BpmI	CTGGAG	2 cut(s)	198, 1074
BpuEI	CTTGAG	1 cut(s)	568
BpuMI	CCSGG	2 cut(s)	258, 426
BsaJI	CCNNGG	6 cut(s)	117, 257, 424, 617, 618, 1113
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	1 cut(s)	874
Bse118I	RCCGGY	2 cut(s)	689, 958
Bse1I	ACTGG	2 cut(s)	56, 812
Bse3DI	GCAATG	2 cut(s)	510, 960
BseBI	CCWGG	4 cut(s)	85, 177, 619, 738
BseDI	CCNNGG	6 cut(s)	117, 257, 424, 617, 618, 1113
BseGI	GGATG	2 cut(s)	173, 861
BseLI	CCNNNNNNNGG	1 cut(s)	874
BseMI	GCAATG	2 cut(s)	510, 960
BseNI	ACTGG	2 cut(s)	56, 812
BseXI	GCAGC	3 cut(s)	517, 545, 992
BshFI	GGCC	2 cut(s)	422, 615
BshNI	GGYRCC	1 cut(s)	331
BsiSI	CCGG	4 cut(s)	257, 426, 690, 959
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	874
BsmAI	GTCTC	2 cut(s)	162, 985
BsmFI	GGGAC	1 cut(s)	186
BsnI	GGCC	2 cut(s)	422, 615
Bsp143I	GATC	3 cut(s)	25, 405, 459
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	1 cut(s)	468
BspANI	GGCC	2 cut(s)	422, 615
BspHI	TCATGA	2 cut(s)	280, 456
BspLI	GGNNCC	4 cut(s)	174, 333, 423, 616
BspMAI	CTGCAG	2 cut(s)	402, 535
BspPI	GGATC	1 cut(s)	400
BspT107I	GGYRCC	1 cut(s)	331
BsrDI	GCAATG	2 cut(s)	510, 960
BsrFI	RCCGGY	2 cut(s)	689, 958
BsrI	ACTGG	2 cut(s)	56, 812
BssAI	RCCGGY	2 cut(s)	689, 958
BssECI	CCNNGG	6 cut(s)	117, 257, 424, 617, 618, 1113
BssMI	GATC	3 cut(s)	25, 405, 459
BssT1I	CCWWGG	2 cut(s)	117, 1113
Bst2UI	CCWGG	4 cut(s)	85, 177, 619, 738
Bst4CI	ACNGT	5 cut(s)	187, 418, 562, 609, 848
Bst6I	CTCTTC	2 cut(s)	257, 1026
BstC8I	GCNNGC	2 cut(s)	743, 780
BstDEI	CTNAG	1 cut(s)	1134
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	2 cut(s)	173, 861
BstKTI	GATC	3 cut(s)	28, 408, 462
BstMAI	GTCTC	2 cut(s)	162, 985
BstMBI	GATC	3 cut(s)	25, 405, 459
BstMWI	GCNNNNNNNGC	1 cut(s)	572
BstNI	CCWGG	4 cut(s)	85, 177, 619, 738
BstNSI	RCATGY	1 cut(s)	299
BstSCI	CCNGG	6 cut(s)	83, 175, 256, 424, 617, 736
BstSFI	CTRYAG	3 cut(s)	398, 531, 558
BstV1I	GCAGC	3 cut(s)	517, 545, 992
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
BsuRI	GGCC	2 cut(s)	422, 615
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	2 cut(s)	173, 861
BtsI	GCAGTG	2 cut(s)	111, 395
BtsIMutI	CAGTG	4 cut(s)	111, 183, 395, 853
Cac8I	GCNNGC	2 cut(s)	743, 780
CciI	TCATGA	2 cut(s)	280, 456
Cfr10I	RCCGGY	2 cut(s)	689, 958
Cfr13I	GGNCC	3 cut(s)	173, 421, 614
CsiI	ACCWGGT	1 cut(s)	83
Csp6I	GTAC	3 cut(s)	91, 332, 605
CviQI	GTAC	3 cut(s)	91, 332, 605
DdeI	CTNAG	1 cut(s)	1134
DpnI	GATC	3 cut(s)	27, 407, 461
DpnII	GATC	3 cut(s)	25, 405, 459
DraIII	CACNNNGTG	1 cut(s)	700
DriI	GACNNNNNGTC	1 cut(s)	179
Eam1104I	CTCTTC	2 cut(s)	257, 1026
Eam1105I	GACNNNNNGTC	1 cut(s)	179
EarI	CTCTTC	2 cut(s)	257, 1026
Eco130I	CCWWGG	2 cut(s)	117, 1113
Eco47I	GGWCC	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	173
EcoRII	CCWGG	4 cut(s)	83, 175, 617, 736
EcoT14I	CCWWGG	2 cut(s)	117, 1113
EcoT22I	ATGCAT	1 cut(s)	246
ErhI	CCWWGG	2 cut(s)	117, 1113
FaqI	GGGAC	1 cut(s)	186
FauNDI	CATATG	1 cut(s)	784
FbaI	TGATCA	1 cut(s)	25
Fnu4HI	GCNGC	4 cut(s)	468, 531, 534, 981
FokI	GGATG	2 cut(s)	180, 848
Fsp4HI	GCNGC	4 cut(s)	468, 531, 534, 981
FspBI	CTAG	3 cut(s)	72, 314, 986
GluI	GCNGC	4 cut(s)	468, 531, 534, 981
GsuI	CTGGAG	2 cut(s)	198, 1074
HaeIII	GGCC	2 cut(s)	422, 615
HapII	CCGG	4 cut(s)	257, 426, 690, 959
HincII	GTYRAC	1 cut(s)	293
HindII	GTYRAC	1 cut(s)	293
HinfI	GANTC	3 cut(s)	180, 248, 712
HpaII	CCGG	4 cut(s)	257, 426, 690, 959
HphI	GGTGA	2 cut(s)	202, 482
Hpy166II	GTNNAC	2 cut(s)	293, 475
Hpy188I	TCNGA	3 cut(s)	30, 305, 842
Hpy188III	TCNNGA	4 cut(s)	281, 457, 854, 1035
Hpy8I	GTNNAC	2 cut(s)	293, 475
HpyAV	CCTTC	3 cut(s)	25, 738, 760
HpyCH4III	ACNGT	5 cut(s)	187, 418, 562, 609, 848
HpyCH4V	TGCA	9 cut(s)	80, 244, 352, 366, 400, 533, 782, 953, 1088
HpyF10VI	GCNNNNNNNGC	1 cut(s)	572
HpyF3I	CTNAG	1 cut(s)	1134
KpnI	GGTACC	1 cut(s)	335
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	25, 405, 459
LmnI	GCTCC	3 cut(s)	40, 572, 1081
Lsp1109I	GCAGC	3 cut(s)	517, 545, 992
LweI	GCATC	3 cut(s)	231, 375, 765
MabI	ACCWGGT	1 cut(s)	83
MaeI	CTAG	3 cut(s)	72, 314, 986
MaeIII	GTNAC	3 cut(s)	109, 181, 692
MalI	GATC	3 cut(s)	27, 407, 461
MboI	GATC	3 cut(s)	25, 405, 459
MboII	GAAGA	5 cut(s)	134, 274, 415, 454, 1013
MfeI	CAATTG	1 cut(s)	972
MflI	RGATCY	1 cut(s)	405
MluCI	AATT	8 cut(s)	353, 505, 649, 723, 894, 972, 1000, 1124
MlyI	GAGTC	2 cut(s)	189, 257
MnlI	CCTC	5 cut(s)	258, 503, 757, 875, 1086
Mph1103I	ATGCAT	1 cut(s)	246
MslI	CAYNNNNRTG	2 cut(s)	116, 188
MspA1I	CMGCKG	2 cut(s)	470, 536
MspI	CCGG	4 cut(s)	257, 426, 690, 959
MspR9I	CCNGG	6 cut(s)	85, 177, 258, 426, 619, 738
MunI	CAATTG	1 cut(s)	972
MvaI	CCWGG	4 cut(s)	85, 177, 619, 738
MwoI	GCNNNNNNNGC	1 cut(s)	572
NciI	CCSGG	2 cut(s)	258, 426
NcoI	CCATGG	1 cut(s)	117
NdeI	CATATG	1 cut(s)	784
NdeII	GATC	3 cut(s)	25, 405, 459
NlaIV	GGNNCC	4 cut(s)	174, 333, 423, 616
NmuCI	GTSAC	3 cut(s)	109, 181, 692
NsiI	ATGCAT	1 cut(s)	246
NspI	RCATGY	1 cut(s)	299
PagI	TCATGA	2 cut(s)	280, 456
PasI	CCCWGGG	1 cut(s)	618
PfeI	GAWTC	1 cut(s)	712
PkrI	GCNGC	4 cut(s)	469, 532, 535, 982
PleI	GAGTC	2 cut(s)	188, 256
PpsI	GAGTC	2 cut(s)	188, 256
PpuMI	RGGWCCY	1 cut(s)	173
Psp5II	RGGWCCY	1 cut(s)	173
Psp6I	CCWGG	4 cut(s)	83, 175, 617, 736
PspGI	CCWGG	4 cut(s)	83, 175, 617, 736
PspN4I	GGNNCC	4 cut(s)	174, 333, 423, 616
PspPI	GGNCC	3 cut(s)	173, 421, 614
PspPPI	RGGWCCY	1 cut(s)	173
PstI	CTGCAG	2 cut(s)	402, 535
PsuI	RGATCY	1 cut(s)	405
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	3 cut(s)	92, 333, 606
RsaNI	GTAC	3 cut(s)	91, 332, 605
RseI	CAYNNNNRTG	2 cut(s)	116, 188
SatI	GCNGC	4 cut(s)	468, 531, 534, 981
Sau3AI	GATC	3 cut(s)	25, 405, 459
Sau96I	GGNCC	3 cut(s)	173, 421, 614
SchI	GAGTC	2 cut(s)	189, 257
ScrFI	CCNGG	6 cut(s)	85, 177, 258, 426, 619, 738
SexAI	ACCWGGT	1 cut(s)	83
SfaNI	GCATC	3 cut(s)	231, 375, 765
SfcI	CTRYAG	3 cut(s)	398, 531, 558
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	2 cut(s)	116, 188
SmlI	CTYRAG	1 cut(s)	547
SmoI	CTYRAG	1 cut(s)	547
Sse9I	AATT	8 cut(s)	353, 505, 649, 723, 894, 972, 1000, 1124
SsiI	CCGC	1 cut(s)	468
SspMI	CTAG	3 cut(s)	72, 314, 986
StyD4I	CCNGG	6 cut(s)	83, 175, 256, 424, 617, 736
StyI	CCWWGG	2 cut(s)	117, 1113
TaaI	ACNGT	5 cut(s)	187, 418, 562, 609, 848
TasI	AATT	8 cut(s)	353, 505, 649, 723, 894, 972, 1000, 1124
TatI	WGTACW	1 cut(s)	604
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	1 cut(s)	712
TscAI	CASTG	4 cut(s)	118, 190, 402, 853
TseFI	GTSAC	3 cut(s)	109, 181, 692
TseI	GCWGC	3 cut(s)	530, 533, 980
Tsp45I	GTSAC	3 cut(s)	109, 181, 692
TspDTI	ATGAA	4 cut(s)	189, 442, 914, 1013
TspGWI	ACGGA	1 cut(s)	485
TspRI	CASTG	4 cut(s)	118, 190, 402, 853
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	2 cut(s)	1000, 1124
XceI	RCATGY	1 cut(s)	299
XspI	CTAG	3 cut(s)	72, 314, 986
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.