RLG00000004494

Transmembrane amino acid transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005950
Physical Location & Seq
Forward (+)
59834221 .. 59836830
2610 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004494

Sequence Viewer

Length: 1251 bp
ATGGATATTGAAGCAAAAGGTATTGATCAGAAGGAAAAGGATCTGAATGACTGGCTTCCCATCACAAGTTCTAGGACTGCGACTTGGTGGTACACTGCTTTCCACAATGTCACTGCCATGGTTGGTGCTGGTGTGCTTGGTCTTCCCTTTGCCATGTCTCAACTTGGATGGGGATCTGGAGTCACTGTGATTGTTCTTTCATGGATTATTACCCTATACACCTTATGGCAGATGGTAGAGATGCATGAGTCCGTGCCGGGGAAGAGGTTTGATAGGTACCATGAGTTGGGGCTTTGGATTGTGGTACCCCAACAACTAATGGTACAATCTGGTACGTGCATCGTCTATATGATTACTGGTGGTAAATCACTGCAGAAGATCCACGATACTGTGTCCCCTGGAAAACCAATCAAGACCACCTACTTCATCATGATCTTCACCGCTGTCCACTTTGTTATCTCTCACCTCCCTAGCTTCAATTCCATTGCTGGTATTTCTCTTGCTGCAGCTGTTGTCCTTAAGGTACATATATTTTCCTTTTCATCCATTGCTTGGGGAGCTTCACTTCACAAAGGGGTTCAACCAGAAGTTCAGTATGGCCCCAGGGCATCAACCACCACAGGAAATGTGTTCAACTTCTTTAGTGCTTTGGGAGATGTAGCTTTTTCTTTTGCTGGTCACAATGTGGTTTTGGAGATTCAAGCAACACTTCCTTCTGCACCTGACAAGCCTTCCAAAAAACCAATGTGGAAGGGTGTGATGCTTGCATATGTTGTGGTGGCTTTGTGCTATTTCCCAGTTGCTCTTATCGGTTATTGGGTGTTCCGAAACAGTGTTCAGGATAACATCCTCATATCATTGGAGAAACGTAAGTGGCTTATTGTTTTTGCTAATGCTTTTGTTGTTATTCATGTCACTGGAAGTTATCAGGTCTATGCAATGCCGGTGTTTGACTCAATTGAAGCAGCTCTAGTGAAACAGATGCATTTCAAACCATCTTATTCTCTTCGCTTTATATCACGAAATCTCTTTTCACGTTCCCTTTCTTTGGCGGGCTTCTCTTTTGCTCCCACAACATATTTTCTTCCTTGCATCATGTGGCTCGTCATCTACAAACCTAAGAAGTTCAGCTTATCCTGGTTTGCAAATTGGTTCTGCATTATAGCTGGAGTGTTATTGATGATTTTTGCTCCTATTGGTGGATTGAGGAATATCATACTTCAAGCCAAGGATTACAAATTCTACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

417

Amino Acids

46.6

Weight (kDa)

9.48

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 25 - 339 5.7e-76 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 276, 304
AccB1I GGYRCC 2 cut(s) 276, 304
AccB7I CCANNNNNTGG 2 cut(s) 286, 552
AciI CCGC 2 cut(s) 441, 1052
AclWI GGATC 3 cut(s) 48, 181, 373
AcsI RAATTY 1 cut(s) 1238
AdeI CACNNNGTG 1 cut(s) 685
AfaI GTAC 6 cut(s) 92, 278, 306, 324, 334, 525
AfiI CCNNNNNNNGG 5 cut(s) 258, 286, 552, 1048, 1199
AflII CTTAAG 1 cut(s) 518
AgsI TTSAA 8 cut(s) 11, 478, 581, 634, 701, 962, 991, 1223
AjnI CCWGG 3 cut(s) 397, 602, 1136
AluBI AGCT 7 cut(s) 474, 509, 560, 662, 968, 1131, 1166
AluI AGCT 7 cut(s) 474, 509, 560, 662, 968, 1131, 1166
Alw26I GTCTC 1 cut(s) 162
AlwI GGATC 3 cut(s) 48, 181, 373
AoxI GGCC 1 cut(s) 598
ApeKI GCWGC 3 cut(s) 503, 506, 965
ApoI RAATTY 1 cut(s) 1238
Asp718I GGTACC 2 cut(s) 276, 304
AspS9I GGNCC 1 cut(s) 599
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 2 cut(s) 430, 455
BanI GGYRCC 2 cut(s) 276, 304
BbsI GAAGAC 1 cut(s) 134
BbvI GCAGC 3 cut(s) 490, 518, 977
BccI CCATC 4 cut(s) 68, 162, 226, 1003
BciT130I CCWGG 3 cut(s) 399, 604, 1138
BclI TGATCA 1 cut(s) 25
BcnI CCSGG 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 162
BfaI CTAG 3 cut(s) 72, 471, 971
BfmI CTRYAG 2 cut(s) 371, 504
BfrI CTTAAG 1 cut(s) 518
BisI GCNGC 3 cut(s) 504, 507, 966
BlsI GCNGC 3 cut(s) 505, 508, 967
Bme1390I CCNGG 4 cut(s) 258, 399, 604, 1138
BmgT120I GGNCC 1 cut(s) 599
BmiI GGNNCC 3 cut(s) 278, 306, 601
BmrFI CCNGG 4 cut(s) 258, 399, 604, 1138
BmrI ACTGGG 1 cut(s) 791
BmsI GCATC 6 cut(s) 231, 348, 617, 750, 972, 1101
BmuI ACTGGG 1 cut(s) 791
BpiI GAAGAC 1 cut(s) 134
BpmI CTGGAG 2 cut(s) 198, 1188
BpuMI CCSGG 1 cut(s) 258
BsaAI YACGTR 1 cut(s) 336
BsaBI GATNNNNATC 1 cut(s) 172
BsaJI CCNNGG 6 cut(s) 117, 257, 397, 602, 603, 1227
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 5 cut(s) 258, 286, 552, 1048, 1199
Bse118I RCCGGY 1 cut(s) 943
Bse1I ACTGG 4 cut(s) 56, 361, 797, 922
Bse3DI GCAATG 3 cut(s) 483, 546, 945
Bse8I GATNNNNATC 1 cut(s) 172
BseBI CCWGG 3 cut(s) 399, 604, 1138
BseDI CCNNGG 6 cut(s) 117, 257, 397, 602, 603, 1227
BseGI GGATG 3 cut(s) 173, 542, 846
BseJI GATNNNNATC 1 cut(s) 172
BseLI CCNNNNNNNGG 5 cut(s) 258, 286, 552, 1048, 1199
BseMI GCAATG 3 cut(s) 483, 546, 945
BseNI ACTGG 4 cut(s) 56, 361, 797, 922
BseXI GCAGC 3 cut(s) 490, 518, 977
BsgI GTGCAG 1 cut(s) 702
BshFI GGCC 1 cut(s) 600
BshNI GGYRCC 2 cut(s) 276, 304
BsiSI CCGG 2 cut(s) 257, 944
BslFI GGGAC 1 cut(s) 379
BslI CCNNNNNNNGG 5 cut(s) 258, 286, 552, 1048, 1199
BsmAI GTCTC 1 cut(s) 162
BsmFI GGGAC 1 cut(s) 379
BsnI GGCC 1 cut(s) 600
Bsp143I GATC 5 cut(s) 25, 40, 173, 378, 432
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 2 cut(s) 441, 1052
BspANI GGCC 1 cut(s) 600
BspHI TCATGA 1 cut(s) 429
BspLI GGNNCC 3 cut(s) 278, 306, 601
BspMAI CTGCAG 2 cut(s) 375, 508
BspPI GGATC 3 cut(s) 48, 181, 373
BspT107I GGYRCC 2 cut(s) 276, 304
BspTI CTTAAG 1 cut(s) 518
BsrDI GCAATG 3 cut(s) 483, 546, 945
BsrFI RCCGGY 1 cut(s) 943
BsrI ACTGG 4 cut(s) 56, 361, 797, 922
BssAI RCCGGY 1 cut(s) 943
BssECI CCNNGG 6 cut(s) 117, 257, 397, 602, 603, 1227
BssMI GATC 5 cut(s) 25, 40, 173, 378, 432
BssT1I CCWWGG 2 cut(s) 117, 1227
Bst2UI CCWGG 3 cut(s) 399, 604, 1138
Bst4CI ACNGT 3 cut(s) 187, 391, 833
Bst6I CTCTTC 2 cut(s) 257, 1011
BstAFI CTTAAG 1 cut(s) 518
BstBAI YACGTR 1 cut(s) 336
BstC8I GCNNGC 2 cut(s) 765, 1054
BstDEI CTNAG 2 cut(s) 1119, 1248
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 3 cut(s) 173, 542, 846
BstKTI GATC 5 cut(s) 28, 43, 176, 381, 435
BstMAI GTCTC 1 cut(s) 162
BstMBI GATC 5 cut(s) 25, 40, 173, 378, 432
BstMWI GCNNNNNNNGC 1 cut(s) 557
BstNI CCWGG 3 cut(s) 399, 604, 1138
BstSCI CCNGG 4 cut(s) 256, 397, 602, 1136
BstSFI CTRYAG 2 cut(s) 371, 504
BstV1I GCAGC 3 cut(s) 490, 518, 977
BstV2I GAAGAC 1 cut(s) 134
BstX2I RGATCY 3 cut(s) 40, 173, 378
BstYI RGATCY 3 cut(s) 40, 173, 378
BsuRI GGCC 1 cut(s) 600
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 3 cut(s) 173, 542, 846
BtsI GCAGTG 3 cut(s) 93, 111, 368
BtsIMutI CAGTG 6 cut(s) 93, 111, 183, 368, 838, 915
Cac8I GCNNGC 2 cut(s) 765, 1054
CciI TCATGA 1 cut(s) 429
Cfr10I RCCGGY 1 cut(s) 943
Cfr13I GGNCC 1 cut(s) 599
Csp6I GTAC 6 cut(s) 91, 277, 305, 323, 333, 524
CviAII CATG 8 cut(s) 118, 154, 201, 245, 281, 430, 911, 1096
CviQI GTAC 6 cut(s) 91, 277, 305, 323, 333, 524
DdeI CTNAG 2 cut(s) 1119, 1248
DpnI GATC 5 cut(s) 27, 42, 175, 380, 434
DpnII GATC 5 cut(s) 25, 40, 173, 378, 432
DraIII CACNNNGTG 1 cut(s) 685
Eam1104I CTCTTC 2 cut(s) 257, 1011
EarI CTCTTC 2 cut(s) 257, 1011
Eco130I CCWWGG 2 cut(s) 117, 1227
EcoRII CCWGG 3 cut(s) 397, 602, 1136
EcoT14I CCWWGG 2 cut(s) 117, 1227
EcoT22I ATGCAT 2 cut(s) 246, 987
ErhI CCWWGG 2 cut(s) 117, 1227
FaeI CATG 8 cut(s) 121, 157, 204, 248, 284, 433, 914, 1099
FalI AAGNNNNNCTT 4 cut(s) 693, 725, 1115, 1147
FaqI GGGAC 1 cut(s) 379
FatI CATG 8 cut(s) 117, 153, 200, 244, 280, 429, 910, 1095
FauI CCCGC 1 cut(s) 1045
FauNDI CATATG 1 cut(s) 769
FbaI TGATCA 1 cut(s) 25
Fnu4HI GCNGC 3 cut(s) 504, 507, 966
FokI GGATG 3 cut(s) 180, 529, 833
Fsp4HI GCNGC 3 cut(s) 504, 507, 966
FspBI CTAG 3 cut(s) 72, 471, 971
GluI GCNGC 3 cut(s) 504, 507, 966
GsuI CTGGAG 2 cut(s) 198, 1188
HaeIII GGCC 1 cut(s) 600
HapII CCGG 2 cut(s) 257, 944
Hin1II CATG 8 cut(s) 121, 157, 204, 248, 284, 433, 914, 1099
HinfI GANTC 4 cut(s) 180, 248, 697, 953
HpaII CCGG 2 cut(s) 257, 944
HphI GGTGA 2 cut(s) 430, 455
Hpy166II GTNNAC 2 cut(s) 93, 448
Hpy188I TCNGA 3 cut(s) 30, 45, 827
Hpy188III TCNNGA 5 cut(s) 177, 412, 430, 839, 1020
Hpy8I GTNNAC 2 cut(s) 93, 448
HpyAV CCTTC 4 cut(s) 25, 723, 741, 745
HpyCH4III ACNGT 3 cut(s) 187, 391, 833
HpyCH4IV ACGT 3 cut(s) 335, 868, 1036
HpyF10VI GCNNNNNNNGC 1 cut(s) 557
HpyF3I CTNAG 2 cut(s) 1119, 1248
HpySE526I ACGT 3 cut(s) 335, 868, 1036
Hsp92II CATG 8 cut(s) 121, 157, 204, 248, 284, 433, 914, 1099
KpnI GGTACC 2 cut(s) 280, 308
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 5 cut(s) 25, 40, 173, 378, 432
LmnI GCTCC 3 cut(s) 557, 1072, 1195
Lsp1109I GCAGC 3 cut(s) 490, 518, 977
LweI GCATC 6 cut(s) 231, 348, 617, 750, 972, 1101
MaeI CTAG 3 cut(s) 72, 471, 971
MaeII ACGT 3 cut(s) 335, 868, 1036
MaeIII GTNAC 4 cut(s) 109, 181, 677, 913
MalI GATC 5 cut(s) 27, 42, 175, 380, 434
MboI GATC 5 cut(s) 25, 40, 173, 378, 432
MboII GAAGA 6 cut(s) 134, 274, 388, 427, 998, 1076
MfeI CAATTG 1 cut(s) 957
MflI RGATCY 3 cut(s) 40, 173, 378
MluCI AATT 4 cut(s) 478, 957, 1147, 1238
MlyI GAGTC 3 cut(s) 189, 257, 947
MnlI CCTC 4 cut(s) 258, 476, 860, 1200
Mph1103I ATGCAT 2 cut(s) 246, 987
MseI TTAA 1 cut(s) 519
MslI CAYNNNNRTG 1 cut(s) 116
MspA1I CMGCKG 2 cut(s) 443, 509
MspCI CTTAAG 1 cut(s) 518
MspI CCGG 2 cut(s) 257, 944
MspR9I CCNGG 4 cut(s) 258, 399, 604, 1138
MunI CAATTG 1 cut(s) 957
MvaI CCWGG 3 cut(s) 399, 604, 1138
MwoI GCNNNNNNNGC 1 cut(s) 557
NciI CCSGG 1 cut(s) 258
NcoI CCATGG 1 cut(s) 117
NdeI CATATG 1 cut(s) 769
NdeII GATC 5 cut(s) 25, 40, 173, 378, 432
NlaIII CATG 8 cut(s) 121, 157, 204, 248, 284, 433, 914, 1099
NlaIV GGNNCC 3 cut(s) 278, 306, 601
NmuCI GTSAC 4 cut(s) 109, 181, 677, 913
NsiI ATGCAT 2 cut(s) 246, 987
PagI TCATGA 1 cut(s) 429
PasI CCCWGGG 1 cut(s) 603
PfeI GAWTC 1 cut(s) 697
PflMI CCANNNNNTGG 2 cut(s) 286, 552
PkrI GCNGC 3 cut(s) 505, 508, 967
PleI GAGTC 3 cut(s) 188, 256, 947
PpsI GAGTC 3 cut(s) 188, 256, 947
Ppu21I YACGTR 1 cut(s) 336
Psp6I CCWGG 3 cut(s) 397, 602, 1136
PspGI CCWGG 3 cut(s) 397, 602, 1136
PspN4I GGNNCC 3 cut(s) 278, 306, 601
PspPI GGNCC 1 cut(s) 599
PstI CTGCAG 2 cut(s) 375, 508
PsuI RGATCY 3 cut(s) 40, 173, 378
PvuII CAGCTG 1 cut(s) 509
RsaI GTAC 6 cut(s) 92, 278, 306, 324, 334, 525
RsaNI GTAC 6 cut(s) 91, 277, 305, 323, 333, 524
RseI CAYNNNNRTG 1 cut(s) 116
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 3 cut(s) 504, 507, 966
Sau3AI GATC 5 cut(s) 25, 40, 173, 378, 432
Sau96I GGNCC 1 cut(s) 599
SchI GAGTC 3 cut(s) 189, 257, 947
ScrFI CCNGG 4 cut(s) 258, 399, 604, 1138
SfaNI GCATC 6 cut(s) 231, 348, 617, 750, 972, 1101
SfcI CTRYAG 2 cut(s) 371, 504
SmiMI CAYNNNNRTG 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 4 cut(s) 478, 957, 1147, 1238
SsiI CCGC 2 cut(s) 441, 1052
SspMI CTAG 3 cut(s) 72, 471, 971
StyD4I CCNGG 4 cut(s) 256, 397, 602, 1136
StyI CCWWGG 2 cut(s) 117, 1227
TaaI ACNGT 3 cut(s) 187, 391, 833
TaiI ACGT 3 cut(s) 338, 871, 1039
TasI AATT 4 cut(s) 478, 957, 1147, 1238
TfiI GAWTC 1 cut(s) 697
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 6 cut(s) 100, 118, 190, 375, 838, 922
TseFI GTSAC 4 cut(s) 109, 181, 677, 913
TseI GCWGC 3 cut(s) 503, 506, 965
Tsp45I GTSAC 4 cut(s) 109, 181, 677, 913
TspDTI ATGAA 4 cut(s) 189, 415, 531, 899
TspGWI ACGGA 1 cut(s) 241
TspRI CASTG 6 cut(s) 100, 118, 190, 375, 838, 922
Van91I CCANNNNNTGG 2 cut(s) 286, 552
Vha464I CTTAAG 1 cut(s) 518
XapI RAATTY 1 cut(s) 1238
XspI CTAG 3 cut(s) 72, 471, 971
Zsp2I ATGCAT 2 cut(s) 246, 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.