Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005950

Physical Location & Seq

Genomic Coordinates Reverse (-)

52180691 .. 52183231

Gene Structure 2541 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0420300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGTCAAGGCTATTCAAATTCATGAACTTGGTGGACCTGAGGTATTGAAATGGGAAGATGTCAAAATAGGAGAGCCGAAGGAGGGTGAGATTCGTGTGAAGAACAAGGCTATTGGGATTAATTTCATTGATGTGTACTTCCGCAAAGGGCTTTATTACAAGGCTGATACAATGCCCTTCATCCCAGGTATGGAGGCTTGTGGAGTTGTGACAGCCGTTGGACCTGGGCTAACAGGGAGGCAAGTTGGAGATCTTGTCGCGTATATTGGTACACCGCTGGGCTCATATGCAGAAGAGCAGATCCTTCCTGCAAACAAAGTTGTGCCTGTTCCTCCTTCCATTGATCCTATTGTTGCAGCGTCCGTCATGCTTAAGGGTATGACAGCTCAGGTTCTACTACGCCAATGTTTCAAGGTTGAACCTGGACACACAGTCCTTGTTCATGCAGCAGCTGGTGGAGTCGGATCCCTTTTATGCCAGTGGGCTAATGCCCTTGGTGCCACTGTCATTGGAACTGTATCGACTAAAGAGAAGGCAGCTCAAGCCAAGGAAGATGGCTGTCACCATGTCATAATCTATAAGGAAGAGGACTTTGTTGCTCGTGTGACTGAAATAACATCTGATAATAATGGAGTTGATGTTGTCTACGACTCTGTAGGCAAGGATACCTTTCAGGGATCATTGGCTTGCTTGAAGACTCGAGGATACATGGTCAGTTTCGGGCAGGCATCAGGTAGACCTGACCCTATTCCATTGTCAGCTCTTGCCGCAAAGTCACTCTTCTTGACAAGGCCTGCCCTTTTCCAGTACACTGCAACTCGAGACAAATTGCTAGAGGCTGCAGGAGAGGTATTTGCTAATGTTGCATCAGGTGTGTTGCGGGTTCGAGTAAATCACAAGTACTCATTGTCTCATGCAGCACAAGCACATGCAGACTTGGAGAATAGGAGAACATCTGGTTCAGCTGTTCTTATTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

326

Amino Acids

34.77

Weight (kDa)

7.66

Isoelectric Point (pI)

27.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	28 - 111	1.2e-15	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	153 - 262	4.9e-25	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	186 - 324	9.7e-20	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005950)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07660
malus_domestica	MD06G1148600.v1.1 MD14G1162700.v1.1
prunus_persica	Prupe.5G155600_v2.0.a1 Prupe.5G155600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380391 RchiOBHm_Chr5g0057301 RchiOBHm_Chr7g0190811
rosa_laevigata	RLG00000004492 RLG00000004494 RLG00000026307
rosa_multiflora	Rmu_sc0001334.1_g000017 Rmu_sc0005371.1_g000002
rosa_roxburghii	Rroxscaffold_3G00264280 Rroxscaffold_4G00279430
rosa_rugosa	Rorug01G0420300 Rorug01G0420400 Rorug01G0420500 Rorug06G0507300
rosa_samantha	Rh1BG399900 Rh1CG414600 Rh7AG113900 Rh7BG116500 Rh7CG119200
rosa_wichuraiana	Rw1G038710 Rw5G035360 Rw7G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	497
AccI	GTMKAC	2 cut(s)	645, 736
AccII	CGCG	1 cut(s)	260
AciI	CCGC	4 cut(s)	142, 275, 768, 880
AclWI	GGATC	5 cut(s)	295, 338, 459, 472, 685
AcsI	RAATTY	1 cut(s)	18
AfaI	GTAC	4 cut(s)	137, 271, 809, 902
AfiI	CCNNNNNNNGG	2 cut(s)	83, 190
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	5 cut(s)	17, 49, 412, 419, 694
AhdI	GACNNNNNGTC	1 cut(s)	431
AjnI	CCWGG	3 cut(s)	184, 223, 421
AluBI	AGCT	5 cut(s)	386, 452, 539, 761, 965
AluI	AGCT	5 cut(s)	386, 452, 539, 761, 965
Alw26I	GTCTC	2 cut(s)	816, 915
AlwI	GGATC	5 cut(s)	295, 338, 459, 472, 685
AlwNI	CAGNNNCTG	1 cut(s)	452
Ama87I	CYCGRG	2 cut(s)	699, 819
AoxI	GGCC	1 cut(s)	791
ApeKI	GCWGC	6 cut(s)	356, 446, 449, 536, 839, 917
ApoI	RAATTY	1 cut(s)	18
AseI	ATTAAT	1 cut(s)	120
AspS9I	GGNCC	2 cut(s)	35, 221
AsuHPI	GGTGA	2 cut(s)	98, 554
AvaI	CYCGRG	2 cut(s)	699, 819
AvaII	GGWCC	2 cut(s)	35, 221
AxyI	CCTNAGG	1 cut(s)	39
BamHI	GGATCC	1 cut(s)	464
BanI	GGYRCC	1 cut(s)	497
BanII	GRGCYC	1 cut(s)	284
BauI	CACGAG	1 cut(s)	600
BbsI	GAAGAC	1 cut(s)	701
BbvI	GCAGC	6 cut(s)	368, 458, 461, 548, 826, 929
BccI	CCATC	1 cut(s)	548
BceAI	ACGGC	1 cut(s)	200
BciT130I	CCWGG	3 cut(s)	186, 225, 423
BciVI	GTATCC	2 cut(s)	658, 698
BcoDI	GTCTC	2 cut(s)	816, 915
BfaI	CTAG	1 cut(s)	833
BfmI	CTRYAG	2 cut(s)	654, 840
BfrI	CTTAAG	1 cut(s)	371
BfuI	GTATCC	2 cut(s)	658, 698
BglII	AGATCT	1 cut(s)	250
BisI	GCNGC	7 cut(s)	357, 447, 450, 537, 768, 840, 918
BlsI	GCNGC	7 cut(s)	358, 448, 451, 538, 769, 841, 919
BmcAI	AGTACT	1 cut(s)	902
Bme1390I	CCNGG	3 cut(s)	186, 225, 423
Bme18I	GGWCC	2 cut(s)	35, 221
BmeRI	GACNNNNNGTC	1 cut(s)	431
BmeT110I	CYCGRG	2 cut(s)	699, 819
BmgT120I	GGNCC	2 cut(s)	35, 221
BmiI	GGNNCC	2 cut(s)	466, 499
BmrFI	CCNGG	3 cut(s)	186, 225, 423
BmsI	GCATC	2 cut(s)	737, 875
BpiI	GAAGAC	1 cut(s)	701
Bpu10I	CCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	525
BsaJI	CCNNGG	4 cut(s)	184, 224, 493, 546
BsaXI	ACNNNNNCTCC	4 cut(s)	240, 270, 624, 654
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 190
Bse1I	ACTGG	2 cut(s)	478, 805
Bse21I	CCTNAGG	1 cut(s)	39
BseBI	CCWGG	3 cut(s)	186, 225, 423
BseDI	CCNNGG	4 cut(s)	184, 224, 493, 546
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	83, 190
BseMII	CTCAG	2 cut(s)	30, 401
BseNI	ACTGG	2 cut(s)	478, 805
BseXI	GCAGC	6 cut(s)	368, 458, 461, 548, 826, 929
BseYI	CCCAGC	1 cut(s)	277
Bsh1236I	CGCG	1 cut(s)	260
BshFI	GGCC	1 cut(s)	793
BshNI	GGYRCC	1 cut(s)	497
BsiHKCI	CYCGRG	2 cut(s)	699, 819
BslI	CCNNNNNNNGG	2 cut(s)	83, 190
BsmAI	GTCTC	2 cut(s)	816, 915
BsnI	GGCC	1 cut(s)	793
BsoBI	CYCGRG	2 cut(s)	699, 819
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	5 cut(s)	250, 300, 343, 464, 677
BspACI	CCGC	4 cut(s)	142, 275, 768, 880
BspANI	GGCC	1 cut(s)	793
BspCNI	CTCAG	2 cut(s)	31, 400
BspFNI	CGCG	1 cut(s)	260
BspHI	TCATGA	1 cut(s)	22
BspLI	GGNNCC	2 cut(s)	466, 499
BspMAI	CTGCAG	1 cut(s)	844
BspPI	GGATC	5 cut(s)	295, 338, 459, 472, 685
BspQI	GCTCTTC	1 cut(s)	288
BspT107I	GGYRCC	1 cut(s)	497
BspTI	CTTAAG	1 cut(s)	371
BsrI	ACTGG	2 cut(s)	478, 805
BssECI	CCNNGG	4 cut(s)	184, 224, 493, 546
BssMI	GATC	5 cut(s)	250, 300, 343, 464, 677
BssSI	CACGAG	1 cut(s)	600
BssT1I	CCWWGG	2 cut(s)	493, 546
Bst2BI	CACGAG	1 cut(s)	600
Bst2UI	CCWGG	3 cut(s)	186, 225, 423
Bst4CI	ACNGT	3 cut(s)	433, 505, 517
Bst6I	CTCTTC	3 cut(s)	288, 579, 785
BstAFI	CTTAAG	1 cut(s)	371
BstC8I	GCNNGC	3 cut(s)	688, 726, 795
BstDEI	CTNAG	2 cut(s)	39, 387
BstF5I	GGATG	1 cut(s)	180
BstFNI	CGCG	1 cut(s)	260
BstKTI	GATC	5 cut(s)	253, 303, 346, 467, 680
BstMAI	GTCTC	2 cut(s)	816, 915
BstMBI	GATC	5 cut(s)	250, 300, 343, 464, 677
BstMWI	GCNNNNNNNGC	5 cut(s)	497, 542, 767, 863, 923
BstNI	CCWGG	3 cut(s)	186, 225, 423
BstNSI	RCATGY	1 cut(s)	932
BstSCI	CCNGG	3 cut(s)	184, 223, 421
BstSFI	CTRYAG	2 cut(s)	654, 840
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	6 cut(s)	368, 458, 461, 548, 826, 929
BstV2I	GAAGAC	1 cut(s)	701
BstX2I	RGATCY	3 cut(s)	250, 300, 464
BstYI	RGATCY	3 cut(s)	250, 300, 464
Bsu36I	CCTNAGG	1 cut(s)	39
BsuI	GTATCC	2 cut(s)	658, 698
BsuRI	GGCC	1 cut(s)	793
BtsCI	GGATG	1 cut(s)	180
BtsI	GCAGTG	1 cut(s)	810
BtsIMutI	CAGTG	3 cut(s)	485, 501, 810
Cac8I	GCNNGC	3 cut(s)	688, 726, 795
CaiI	CAGNNNCTG	1 cut(s)	452
CciI	TCATGA	1 cut(s)	22
Cfr13I	GGNCC	2 cut(s)	35, 221
CseI	GACGC	1 cut(s)	348
Csp6I	GTAC	4 cut(s)	136, 270, 808, 901
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviAII	CATG	7 cut(s)	23, 367, 443, 566, 709, 914, 929
CviQI	GTAC	4 cut(s)	136, 270, 808, 901
DdeI	CTNAG	2 cut(s)	39, 387
DpnI	GATC	5 cut(s)	252, 302, 345, 466, 679
DpnII	GATC	5 cut(s)	250, 300, 343, 464, 677
DriI	GACNNNNNGTC	1 cut(s)	431
Eam1104I	CTCTTC	3 cut(s)	288, 579, 785
Eam1105I	GACNNNNNGTC	1 cut(s)	431
EarI	CTCTTC	3 cut(s)	288, 579, 785
Eco130I	CCWWGG	2 cut(s)	493, 546
Eco147I	AGGCCT	1 cut(s)	793
Eco24I	GRGCYC	1 cut(s)	284
Eco47I	GGWCC	2 cut(s)	35, 221
Eco81I	CCTNAGG	1 cut(s)	39
Eco88I	CYCGRG	2 cut(s)	699, 819
EcoRII	CCWGG	3 cut(s)	184, 223, 421
EcoT14I	CCWWGG	2 cut(s)	493, 546
EcoT38I	GRGCYC	1 cut(s)	284
ErhI	CCWWGG	2 cut(s)	493, 546
FaeI	CATG	7 cut(s)	26, 370, 446, 569, 712, 917, 932
FalI	AAGNNNNNCTT	4 cut(s)	653, 685, 764, 796
FatI	CATG	7 cut(s)	22, 366, 442, 565, 708, 913, 928
FauI	CCCGC	1 cut(s)	873
FauNDI	CATATG	1 cut(s)	286
FblI	GTMKAC	2 cut(s)	645, 736
Fnu4HI	GCNGC	7 cut(s)	357, 447, 450, 537, 768, 840, 918
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	7 cut(s)	357, 447, 450, 537, 768, 840, 918
FspBI	CTAG	1 cut(s)	833
GluI	GCNGC	7 cut(s)	357, 447, 450, 537, 768, 840, 918
GsaI	CCCAGC	1 cut(s)	281
HaeIII	GGCC	1 cut(s)	793
HgaI	GACGC	1 cut(s)	348
Hin1II	CATG	7 cut(s)	26, 370, 446, 569, 712, 917, 932
HinfI	GANTC	4 cut(s)	91, 459, 650, 697
HphI	GGTGA	2 cut(s)	98, 554
Hpy166II	GTNNAC	6 cut(s)	35, 136, 272, 646, 737, 810
Hpy188I	TCNGA	2 cut(s)	464, 622
Hpy188III	TCNNGA	3 cut(s)	23, 784, 821
Hpy8I	GTNNAC	6 cut(s)	35, 136, 272, 646, 737, 810
HpyAV	CCTTC	5 cut(s)	73, 187, 314, 345, 526
HpyCH4III	ACNGT	3 cut(s)	433, 505, 517
HpyCH4V	TGCA	9 cut(s)	290, 311, 356, 446, 815, 842, 866, 917, 932
HpyF10VI	GCNNNNNNNGC	5 cut(s)	497, 542, 767, 863, 923
HpyF3I	CTNAG	2 cut(s)	39, 387
Hsp92II	CATG	7 cut(s)	26, 370, 446, 569, 712, 917, 932
Kzo9I	GATC	5 cut(s)	250, 300, 343, 464, 677
LguI	GCTCTTC	1 cut(s)	288
Lsp1109I	GCAGC	6 cut(s)	368, 458, 461, 548, 826, 929
LweI	GCATC	2 cut(s)	737, 875
MaeI	CTAG	1 cut(s)	833
MaeIII	GTNAC	4 cut(s)	208, 560, 604, 774
MalI	GATC	5 cut(s)	252, 302, 345, 466, 679
MboI	GATC	5 cut(s)	250, 300, 343, 464, 677
MboII	GAAGA	7 cut(s)	68, 112, 305, 563, 596, 706, 772
MflI	RGATCY	3 cut(s)	250, 300, 464
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	3 cut(s)	18, 121, 827
MlyI	GAGTC	3 cut(s)	468, 644, 691
MmeI	TCCRAC	3 cut(s)	199, 226, 442
MnlI	CCTC	9 cut(s)	34, 76, 187, 231, 342, 580, 695, 829, 841
MseI	TTAA	3 cut(s)	120, 372, 979
MslI	CAYNNNNRTG	1 cut(s)	131
MspA1I	CMGCKG	3 cut(s)	277, 452, 965
MspCI	CTTAAG	1 cut(s)	371
MspR9I	CCNGG	3 cut(s)	186, 225, 423
MvaI	CCWGG	3 cut(s)	186, 225, 423
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	5 cut(s)	497, 542, 767, 863, 923
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	5 cut(s)	250, 300, 343, 464, 677
NlaIII	CATG	7 cut(s)	26, 370, 446, 569, 712, 917, 932
NlaIV	GGNNCC	2 cut(s)	466, 499
NmuCI	GTSAC	4 cut(s)	208, 560, 604, 774
NspI	RCATGY	1 cut(s)	932
PaeR7I	CTCGAG	2 cut(s)	699, 819
PagI	TCATGA	1 cut(s)	22
PceI	AGGCCT	1 cut(s)	793
PciSI	GCTCTTC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	91
PkrI	GCNGC	7 cut(s)	358, 448, 451, 538, 769, 841, 919
PleI	GAGTC	3 cut(s)	467, 644, 691
PpsI	GAGTC	3 cut(s)	467, 644, 691
PshBI	ATTAAT	1 cut(s)	120
Psp6I	CCWGG	3 cut(s)	184, 223, 421
PspFI	CCCAGC	1 cut(s)	277
PspGI	CCWGG	3 cut(s)	184, 223, 421
PspN4I	GGNNCC	2 cut(s)	466, 499
PspPI	GGNCC	2 cut(s)	35, 221
PspXI	VCTCGAGB	1 cut(s)	699
PstI	CTGCAG	1 cut(s)	844
PstNI	CAGNNNCTG	1 cut(s)	452
PsuI	RGATCY	3 cut(s)	250, 300, 464
PvuII	CAGCTG	2 cut(s)	452, 965
RsaI	GTAC	4 cut(s)	137, 271, 809, 902
RsaNI	GTAC	4 cut(s)	136, 270, 808, 901
RseI	CAYNNNNRTG	1 cut(s)	131
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	3 cut(s)	120, 372, 979
SatI	GCNGC	7 cut(s)	357, 447, 450, 537, 768, 840, 918
Sau3AI	GATC	5 cut(s)	250, 300, 343, 464, 677
Sau96I	GGNCC	2 cut(s)	35, 221
ScaI	AGTACT	1 cut(s)	902
SchI	GAGTC	3 cut(s)	468, 644, 691
ScrFI	CCNGG	3 cut(s)	186, 225, 423
SduI	GDGCHC	1 cut(s)	284
SfaNI	GCATC	2 cut(s)	737, 875
SfcI	CTRYAG	2 cut(s)	654, 840
Sfr274I	CTCGAG	2 cut(s)	699, 819
SinI	GGWCC	2 cut(s)	35, 221
SlaI	CTCGAG	2 cut(s)	699, 819
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	4 cut(s)	371, 540, 699, 819
SmoI	CTYRAG	4 cut(s)	371, 540, 699, 819
Sse9I	AATT	3 cut(s)	18, 121, 827
SseBI	AGGCCT	1 cut(s)	793
SsiI	CCGC	4 cut(s)	142, 275, 768, 880
SspMI	CTAG	1 cut(s)	833
StuI	AGGCCT	1 cut(s)	793
StyD4I	CCNGG	3 cut(s)	184, 223, 421
StyI	CCWWGG	2 cut(s)	493, 546
TaaI	ACNGT	3 cut(s)	433, 505, 517
TaqI	TCGA	4 cut(s)	521, 700, 820, 886
TasI	AATT	3 cut(s)	18, 121, 827
TatI	WGTACW	3 cut(s)	135, 807, 900
TauI	GCSGC	1 cut(s)	770
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	3 cut(s)	120, 372, 979
Tru9I	TTAA	3 cut(s)	120, 372, 979
TscAI	CASTG	3 cut(s)	485, 508, 817
TseFI	GTSAC	4 cut(s)	208, 560, 604, 774
TseI	GCWGC	6 cut(s)	356, 446, 449, 536, 839, 917
Tsp45I	GTSAC	4 cut(s)	208, 560, 604, 774
TspDTI	ATGAA	5 cut(s)	11, 39, 115, 169, 431
TspGWI	ACGGA	1 cut(s)	352
TspRI	CASTG	3 cut(s)	485, 508, 817
Vha464I	CTTAAG	1 cut(s)	371
VpaK11BI	GGWCC	2 cut(s)	35, 221
VspI	ATTAAT	1 cut(s)	120
XapI	RAATTY	1 cut(s)	18
XceI	RCATGY	1 cut(s)	932
XhoI	CTCGAG	2 cut(s)	699, 819
XmiI	GTMKAC	2 cut(s)	645, 736
XspI	CTAG	1 cut(s)	833
ZrmI	AGTACT	1 cut(s)	902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.