Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005950

Physical Location & Seq

Genomic Coordinates Reverse (-)

9177684 .. 9180522

Gene Structure 2839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G009940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGATATTGAAGCAAAAGGTATTGATCAGAAGGAAAAGGATCTGAATGACTGGCTTCCCATCACAAGTTCTAGGACTGCAACCTGGTGGTACTCTGCTTTCCACAATGTCACTGCCATGGTTGGTGCTGGTGTGCTTGGTCTTCCCTTTGCCATGTCTCAACTTGGATGGGGACCTGGAGTCACTGTGATGGTTCTTTCATGGATTGTCACCCTATACACCTTATGGCAGATGGTAGAGATGCATGAGTCTGTGCCGGGGAAGAGGTTTGACAGGTATCATGAGTTGGGTCAACATGCCTTCGGAGAAAAGCTAGGGCTTTGGATTGTGGTACCCCAACAACTAATGGTGCAATTTGGTGTCTGCATCGTCTATATGATTACAGGTGGTAAATCACTGCAGAAGATCCATGATACTGTGGCCCCTGGAAAACCAATCAAAACCACCTACTTCATCATGATCTTCGCCGCGGTCCACTTTTTTATCTCTCACCTCCCTAGCTTCAATTCCATTGCTGGTATTTCTCTTGCTGCAGCTGTCATGTCCTTGAGTTGCTTGGGAGCTTCACTTCACAAAGGGGTTCAACCAGAAGTACAGTATGGCCCCAGGGCTTCAACCACCACAGGAAATGTGTTCAATTTCTTTAGTGCTTTGGGAGATATAGCTTTTGCTTTTGCCGGTCACAATGTGGTTTTGGAGATTCAAGCAACCATTCCTTCTACACCTGACAAGCCCTCCAAAAAACCAATGTGGAAGGGTGTGATGCTTGCATATGTTGTGGTGGCTTTGTGCTATTTCCCAGTTGCTCTTGTAGGTTATTGGGTATTCGGCAACAGTGTTCAGGATAACATCCTCATATCATTGGAGAAACCAAAGTGGCTAATTGTTATTGCTAATGCCTTTGTTGTTATTCATGTGATTGGAAGTTATCAGGTCTTTGCAATGCCGGTGTTTGACACAATTGAAGCAGCTCTAGTGAGACAGATGAATTTCAAACCATCTTATTCTCTTCGCTTTATATCACGAAATCTATTTGTTGCAATGACCTTGTTCATTGGAGTCACGTTCCCTTTCTTTGGCGGGCTTCTCAGTTTCTTTGGAGGATTTGCTTTTGCTCCCACAACATATTTTCTTCCTTGCATCATGTGGCTCGTCATCTACAAACCTAAGAAGTTCAGCTTATCCTGGTTTGCAAATTGGTATATAGTAAATATGACCTCTCTTACTGTTGATGGCGAAAATTTCAAGTGCTTTAATACTCTATTAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

423

Amino Acids

47.13

Weight (kDa)

8.93

Isoelectric Point (pI)

28.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	25 - 407	4.3e-105	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	37 - 167	6.7e-06	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005950)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07660
malus_domestica	MD06G1148600.v1.1 MD14G1162700.v1.1
prunus_persica	Prupe.5G155600_v2.0.a1 Prupe.5G155600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380391 RchiOBHm_Chr5g0057301 RchiOBHm_Chr7g0190811
rosa_laevigata	RLG00000004492 RLG00000004494 RLG00000026307
rosa_multiflora	Rmu_sc0001334.1_g000017 Rmu_sc0005371.1_g000002
rosa_roxburghii	Rroxscaffold_3G00264280 Rroxscaffold_4G00279430
rosa_rugosa	Rorug01G0420300 Rorug01G0420400 Rorug01G0420500 Rorug06G0507300
rosa_samantha	Rh1BG399900 Rh1CG414600 Rh7AG113900 Rh7BG116500 Rh7CG119200
rosa_wichuraiana	Rw1G038710 Rw5G035360 Rw7G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	331
AccB1I	GGYRCC	1 cut(s)	331
AccII	CGCG	1 cut(s)	470
AciI	CCGC	3 cut(s)	468, 470, 1080
AclWI	GGATC	2 cut(s)	48, 400
AcsI	RAATTY	2 cut(s)	988, 1240
AdeI	CACNNNGTG	1 cut(s)	688
AfaI	GTAC	3 cut(s)	92, 333, 594
AfiI	CCNNNNNNNGG	1 cut(s)	1076
AgsI	TTSAA	9 cut(s)	11, 505, 584, 615, 637, 704, 965, 994, 1246
AhdI	GACNNNNNGTC	1 cut(s)	179
AjnI	CCWGG	5 cut(s)	83, 175, 424, 605, 1184
AluBI	AGCT	7 cut(s)	313, 501, 536, 563, 665, 971, 1179
AluI	AGCT	7 cut(s)	313, 501, 536, 563, 665, 971, 1179
Alw26I	GTCTC	2 cut(s)	162, 973
AlwI	GGATC	2 cut(s)	48, 400
AoxI	GGCC	2 cut(s)	420, 601
ApeKI	GCWGC	3 cut(s)	530, 533, 968
ApoI	RAATTY	2 cut(s)	988, 1240
Asp718I	GGTACC	1 cut(s)	331
AspS9I	GGNCC	4 cut(s)	173, 421, 472, 602
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	2 cut(s)	202, 482
AvaII	GGWCC	2 cut(s)	173, 472
BanI	GGYRCC	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	134
BbvI	GCAGC	3 cut(s)	517, 545, 980
BccI	CCATC	6 cut(s)	68, 162, 184, 226, 1006, 1226
BciT130I	CCWGG	5 cut(s)	85, 177, 426, 607, 1186
BclI	TGATCA	1 cut(s)	25
BcnI	CCSGG	1 cut(s)	258
BcoDI	GTCTC	2 cut(s)	162, 973
BfaI	CTAG	4 cut(s)	72, 314, 498, 974
BfmI	CTRYAG	2 cut(s)	398, 531
BisI	GCNGC	4 cut(s)	468, 531, 534, 969
BlsI	GCNGC	4 cut(s)	469, 532, 535, 970
Bme1390I	CCNGG	6 cut(s)	85, 177, 258, 426, 607, 1186
Bme18I	GGWCC	2 cut(s)	173, 472
BmeRI	GACNNNNNGTC	1 cut(s)	179
BmgT120I	GGNCC	4 cut(s)	173, 421, 472, 602
BmiI	GGNNCC	4 cut(s)	174, 333, 423, 604
BmrFI	CCNGG	6 cut(s)	85, 177, 258, 426, 607, 1186
BmrI	ACTGGG	1 cut(s)	794
BmsI	GCATC	4 cut(s)	231, 375, 753, 1149
BmuI	ACTGGG	1 cut(s)	794
BpiI	GAAGAC	1 cut(s)	134
BpmI	CTGGAG	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	568
BpuMI	CCSGG	1 cut(s)	258
BsaJI	CCNNGG	6 cut(s)	117, 257, 424, 468, 605, 606
BsaXI	ACNNNNNCTCC	4 cut(s)	171, 201, 719, 749
Bsc4I	CCNNNNNNNGG	1 cut(s)	1076
Bse118I	RCCGGY	2 cut(s)	677, 946
Bse1I	ACTGG	2 cut(s)	56, 800
Bse3DI	GCAATG	3 cut(s)	510, 948, 1047
BseBI	CCWGG	5 cut(s)	85, 177, 426, 607, 1186
BseDI	CCNNGG	6 cut(s)	117, 257, 424, 468, 605, 606
BseGI	GGATG	2 cut(s)	173, 849
BseLI	CCNNNNNNNGG	1 cut(s)	1076
BseMI	GCAATG	3 cut(s)	510, 948, 1047
BseMII	CTCAG	1 cut(s)	1102
BseNI	ACTGG	2 cut(s)	56, 800
BseXI	GCAGC	3 cut(s)	517, 545, 980
Bsh1236I	CGCG	1 cut(s)	470
BshFI	GGCC	2 cut(s)	422, 603
BshNI	GGYRCC	1 cut(s)	331
BsiSI	CCGG	3 cut(s)	257, 678, 947
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	1076
BsmAI	GTCTC	2 cut(s)	162, 973
BsmFI	GGGAC	1 cut(s)	186
BsnI	GGCC	2 cut(s)	422, 603
Bsp143I	GATC	4 cut(s)	25, 40, 405, 459
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	3 cut(s)	468, 470, 1080
BspANI	GGCC	2 cut(s)	422, 603
BspCNI	CTCAG	1 cut(s)	1101
BspFNI	CGCG	1 cut(s)	470
BspHI	TCATGA	2 cut(s)	280, 456
BspLI	GGNNCC	4 cut(s)	174, 333, 423, 604
BspMAI	CTGCAG	2 cut(s)	402, 535
BspPI	GGATC	2 cut(s)	48, 400
BspT107I	GGYRCC	1 cut(s)	331
BsrDI	GCAATG	3 cut(s)	510, 948, 1047
BsrFI	RCCGGY	2 cut(s)	677, 946
BsrI	ACTGG	2 cut(s)	56, 800
BssAI	RCCGGY	2 cut(s)	677, 946
BssECI	CCNNGG	6 cut(s)	117, 257, 424, 468, 605, 606
BssMI	GATC	4 cut(s)	25, 40, 405, 459
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	5 cut(s)	85, 177, 426, 607, 1186
Bst4CI	ACNGT	5 cut(s)	187, 418, 597, 836, 1228
Bst6I	CTCTTC	2 cut(s)	257, 1014
BstC8I	GCNNGC	2 cut(s)	768, 1082
BstDEI	CTNAG	2 cut(s)	1088, 1167
BstDSI	CCRYGG	2 cut(s)	117, 468
BstF5I	GGATG	2 cut(s)	173, 849
BstFNI	CGCG	1 cut(s)	470
BstKTI	GATC	4 cut(s)	28, 43, 408, 462
BstMAI	GTCTC	2 cut(s)	162, 973
BstMBI	GATC	4 cut(s)	25, 40, 405, 459
BstNI	CCWGG	5 cut(s)	85, 177, 426, 607, 1186
BstNSI	RCATGY	1 cut(s)	299
BstSCI	CCNGG	6 cut(s)	83, 175, 256, 424, 605, 1184
BstSFI	CTRYAG	2 cut(s)	398, 531
BstUI	CGCG	1 cut(s)	470
BstV1I	GCAGC	3 cut(s)	517, 545, 980
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	2 cut(s)	40, 405
BstYI	RGATCY	2 cut(s)	40, 405
BsuRI	GGCC	2 cut(s)	422, 603
BtgI	CCRYGG	2 cut(s)	117, 468
BtsCI	GGATG	2 cut(s)	173, 849
BtsI	GCAGTG	2 cut(s)	111, 395
BtsIMutI	CAGTG	4 cut(s)	111, 183, 395, 841
Cac8I	GCNNGC	2 cut(s)	768, 1082
CciI	TCATGA	2 cut(s)	280, 456
Cfr10I	RCCGGY	2 cut(s)	677, 946
Cfr13I	GGNCC	4 cut(s)	173, 421, 472, 602
Cfr42I	CCGCGG	1 cut(s)	471
CsiI	ACCWGGT	1 cut(s)	83
Csp6I	GTAC	3 cut(s)	91, 332, 593
CviQI	GTAC	3 cut(s)	91, 332, 593
DdeI	CTNAG	2 cut(s)	1088, 1167
DpnI	GATC	4 cut(s)	27, 42, 407, 461
DpnII	GATC	4 cut(s)	25, 40, 405, 459
DraIII	CACNNNGTG	1 cut(s)	688
DriI	GACNNNNNGTC	1 cut(s)	179
Eam1104I	CTCTTC	2 cut(s)	257, 1014
Eam1105I	GACNNNNNGTC	1 cut(s)	179
EarI	CTCTTC	2 cut(s)	257, 1014
Eco130I	CCWWGG	1 cut(s)	117
Eco47I	GGWCC	2 cut(s)	173, 472
EcoO109I	RGGNCCY	1 cut(s)	173
EcoRII	CCWGG	5 cut(s)	83, 175, 424, 605, 1184
EcoT14I	CCWWGG	1 cut(s)	117
EcoT22I	ATGCAT	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	117
FalI	AAGNNNNNCTT	2 cut(s)	1163, 1195
FaqI	GGGAC	1 cut(s)	186
FauI	CCCGC	1 cut(s)	1073
FauNDI	CATATG	1 cut(s)	772
FbaI	TGATCA	1 cut(s)	25
Fnu4HI	GCNGC	4 cut(s)	468, 531, 534, 969
FokI	GGATG	2 cut(s)	180, 836
Fsp4HI	GCNGC	4 cut(s)	468, 531, 534, 969
FspBI	CTAG	4 cut(s)	72, 314, 498, 974
GluI	GCNGC	4 cut(s)	468, 531, 534, 969
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	422, 603
HapII	CCGG	3 cut(s)	257, 678, 947
HincII	GTYRAC	1 cut(s)	293
HindII	GTYRAC	1 cut(s)	293
HinfI	GANTC	4 cut(s)	180, 248, 700, 1059
HpaII	CCGG	3 cut(s)	257, 678, 947
HphI	GGTGA	2 cut(s)	202, 482
Hpy166II	GTNNAC	2 cut(s)	293, 475
Hpy188I	TCNGA	3 cut(s)	30, 45, 305
Hpy188III	TCNNGA	4 cut(s)	281, 457, 842, 1023
Hpy8I	GTNNAC	2 cut(s)	293, 475
HpyAV	CCTTC	4 cut(s)	25, 310, 726, 748
HpyCH4III	ACNGT	5 cut(s)	187, 418, 597, 836, 1228
HpyCH4IV	ACGT	1 cut(s)	1064
HpyF3I	CTNAG	2 cut(s)	1088, 1167
HpySE526I	ACGT	1 cut(s)	1064
KpnI	GGTACC	1 cut(s)	335
Ksp22I	TGATCA	1 cut(s)	25
KspI	CCGCGG	1 cut(s)	471
Kzo9I	GATC	4 cut(s)	25, 40, 405, 459
LmnI	GCTCC	2 cut(s)	560, 1120
Lsp1109I	GCAGC	3 cut(s)	517, 545, 980
LweI	GCATC	4 cut(s)	231, 375, 753, 1149
MabI	ACCWGGT	1 cut(s)	83
MaeI	CTAG	4 cut(s)	72, 314, 498, 974
MaeII	ACGT	1 cut(s)	1064
MaeIII	GTNAC	5 cut(s)	109, 181, 208, 680, 1060
MalI	GATC	4 cut(s)	27, 42, 407, 461
MboI	GATC	4 cut(s)	25, 40, 405, 459
MboII	GAAGA	6 cut(s)	134, 274, 415, 454, 1001, 1124
MfeI	CAATTG	1 cut(s)	960
MflI	RGATCY	2 cut(s)	40, 405
MluCI	AATT	8 cut(s)	353, 505, 637, 882, 960, 988, 1195, 1240
MlyI	GAGTC	3 cut(s)	189, 257, 1068
MnlI	CCTC	6 cut(s)	258, 503, 745, 863, 1094, 1228
Mph1103I	ATGCAT	1 cut(s)	246
MseI	TTAA	1 cut(s)	1254
MslI	CAYNNNNRTG	2 cut(s)	116, 188
MspA1I	CMGCKG	2 cut(s)	470, 536
MspI	CCGG	3 cut(s)	257, 678, 947
MspR9I	CCNGG	6 cut(s)	85, 177, 258, 426, 607, 1186
MunI	CAATTG	1 cut(s)	960
MvaI	CCWGG	5 cut(s)	85, 177, 426, 607, 1186
MvnI	CGCG	1 cut(s)	470
NciI	CCSGG	1 cut(s)	258
NcoI	CCATGG	1 cut(s)	117
NdeI	CATATG	1 cut(s)	772
NdeII	GATC	4 cut(s)	25, 40, 405, 459
NlaIV	GGNNCC	4 cut(s)	174, 333, 423, 604
NmuCI	GTSAC	5 cut(s)	109, 181, 208, 680, 1060
NsiI	ATGCAT	1 cut(s)	246
NspI	RCATGY	1 cut(s)	299
PagI	TCATGA	2 cut(s)	280, 456
PasI	CCCWGGG	1 cut(s)	606
PfeI	GAWTC	1 cut(s)	700
PkrI	GCNGC	4 cut(s)	469, 532, 535, 970
PleI	GAGTC	3 cut(s)	188, 256, 1067
PpsI	GAGTC	3 cut(s)	188, 256, 1067
PpuMI	RGGWCCY	1 cut(s)	173
Psp5II	RGGWCCY	1 cut(s)	173
Psp6I	CCWGG	5 cut(s)	83, 175, 424, 605, 1184
PspGI	CCWGG	5 cut(s)	83, 175, 424, 605, 1184
PspN4I	GGNNCC	4 cut(s)	174, 333, 423, 604
PspPI	GGNCC	4 cut(s)	173, 421, 472, 602
PspPPI	RGGWCCY	1 cut(s)	173
PstI	CTGCAG	2 cut(s)	402, 535
PsuI	RGATCY	2 cut(s)	40, 405
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	3 cut(s)	92, 333, 594
RsaNI	GTAC	3 cut(s)	91, 332, 593
RseI	CAYNNNNRTG	2 cut(s)	116, 188
SacII	CCGCGG	1 cut(s)	471
SaqAI	TTAA	1 cut(s)	1254
SatI	GCNGC	4 cut(s)	468, 531, 534, 969
Sau3AI	GATC	4 cut(s)	25, 40, 405, 459
Sau96I	GGNCC	4 cut(s)	173, 421, 472, 602
SchI	GAGTC	3 cut(s)	189, 257, 1068
ScrFI	CCNGG	6 cut(s)	85, 177, 258, 426, 607, 1186
SexAI	ACCWGGT	1 cut(s)	83
SfaNI	GCATC	4 cut(s)	231, 375, 753, 1149
SfcI	CTRYAG	2 cut(s)	398, 531
Sfr303I	CCGCGG	1 cut(s)	471
SgrBI	CCGCGG	1 cut(s)	471
SinI	GGWCC	2 cut(s)	173, 472
SmiMI	CAYNNNNRTG	2 cut(s)	116, 188
SmlI	CTYRAG	1 cut(s)	547
SmoI	CTYRAG	1 cut(s)	547
Sse9I	AATT	8 cut(s)	353, 505, 637, 882, 960, 988, 1195, 1240
SsiI	CCGC	3 cut(s)	468, 470, 1080
SspMI	CTAG	4 cut(s)	72, 314, 498, 974
StyD4I	CCNGG	6 cut(s)	83, 175, 256, 424, 605, 1184
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	5 cut(s)	187, 418, 597, 836, 1228
TaiI	ACGT	1 cut(s)	1067
TasI	AATT	8 cut(s)	353, 505, 637, 882, 960, 988, 1195, 1240
TatI	WGTACW	1 cut(s)	592
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	1 cut(s)	700
Tru1I	TTAA	1 cut(s)	1254
Tru9I	TTAA	1 cut(s)	1254
TscAI	CASTG	4 cut(s)	118, 190, 402, 841
TseFI	GTSAC	5 cut(s)	109, 181, 208, 680, 1060
TseI	GCWGC	3 cut(s)	530, 533, 968
Tsp45I	GTSAC	5 cut(s)	109, 181, 208, 680, 1060
TspDTI	ATGAA	5 cut(s)	189, 442, 902, 1001, 1042
TspRI	CASTG	4 cut(s)	118, 190, 402, 841
VpaK11BI	GGWCC	2 cut(s)	173, 472
XapI	RAATTY	2 cut(s)	988, 1240
XceI	RCATGY	1 cut(s)	299
XspI	CTAG	4 cut(s)	72, 314, 498, 974
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.