Rh1CG414600

amino acid transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0005950
Physical Location & Seq
Reverse (-)
67628847 .. 67631494
2648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG414600.1

Sequence Viewer

Length: 1080 bp
ATGGTAGAGATGCATGAGTCCGTGCCGGGGAAGAGGTTTGATAGGTACCATGAGTTGGGTCAACATGCCTTCGGAGAAAAGCTAGGGCTTTGCATTGTGGTACCCCAACAACTAATGGTGCAAGCTGGTACGTGCATCGTCTATATGATTACAGGTGGTAAATCACTGCAGAAGATCCACGATACTGTGTCCCCTGGAAAACCAATCAAAACCACCTACTTCATCATGATCTTCGCCGCTGTCCACTTTGTTATCTCTCACCTCCCTAGCTTCAATTCCATTGCTGGTATTTCTCTTGCTGCAGCTGTCATGTCCTTGAGCTACTCTACAATTGCTTGGGGAGCTTCACTTCACAAAGGGGTTCAACCAGAAGTGCAGTATGGCCCCAGGGCTTCAACCACCACAGGAAATGTGTTCAACTTCTTTAGTGCTTTGGGAGATGTAGCTTTTTCTTTTGCTGGTCACAATGTGGTTTTGGAGATTCAAGCAACACTTCCTTCTACACCTGACAAGCCTTCCAAAAAACCAATGTGGAAGGGTGTGATGCTTGCATATGTTGTGGTGGCTTTGTGCTATTTCCCAGTTGCTCTTATCGGTTATTGGGTGTTTGGAAACAGTGTTCAGGATAACATCCTCATATCATTGGAGAAACCTAAGTGGCTTATTGTTATTGCTAATGCCTTTGTTGTTATTCATGTCATTGGAAGTTATCAGGTCTATGCAATGCCGGTGTTTGACACAATTGAAGCAGCTCTAGTGAAACAGATGAATTTCAAACCTTCTTATTCTCTTCGCTTTATATCACGAAATCTATTTGTTGCAATGACCTTGTTCATCGGAGTCACGTTCCCTTTCTTTGGCGGGCTTCTCAGTTTCTTTGGAGGATTTGCTTTTGCTCCCACAACATATTTTCTTCCTTGCATCATGTGGCTCGTCATCTACAAACCTAAGAAGTTCAGCTTATCCTGGTTTGCAAATTGGTTCTGCATTATAGCTGGAGTGTTATTGCTGATTTTTGCTCCTATTGGTGCATTGAGGAATATCATACTTCAAGCCAAGGATTTCAAATATTACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

359

Amino Acids

39.83

Weight (kDa)

9.36

Isoelectric Point (pI)

31.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 2 - 344 1.8e-85 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 45, 100
AccB1I GGYRCC 2 cut(s) 45, 100
AccB7I CCANNNNNTGG 1 cut(s) 55
AciI CCGC 2 cut(s) 237, 861
AclWI GGATC 1 cut(s) 169
AcsI RAATTY 1 cut(s) 769
AdeI CACNNNGTG 1 cut(s) 469
AfaI GTAC 3 cut(s) 47, 102, 130
AfiI CCNNNNNNNGG 3 cut(s) 27, 55, 857
AgsI TTSAA 9 cut(s) 274, 365, 396, 418, 485, 746, 775, 1052, 1066
AjnI CCWGG 3 cut(s) 193, 386, 965
AloI GAACNNNNNNTCC 2 cut(s) 603, 635
AlwI GGATC 1 cut(s) 169
AoxI GGCC 1 cut(s) 382
ApeKI GCWGC 3 cut(s) 299, 302, 749
ApoI RAATTY 1 cut(s) 769
Asp718I GGTACC 2 cut(s) 45, 100
AspS9I GGNCC 1 cut(s) 383
AsuC2I CCSGG 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 251
BanI GGYRCC 2 cut(s) 45, 100
BbvI GCAGC 3 cut(s) 286, 314, 761
BciT130I CCWGG 3 cut(s) 195, 388, 967
BcnI CCSGG 1 cut(s) 27
BfaI CTAG 3 cut(s) 83, 267, 755
BfmI CTRYAG 2 cut(s) 167, 300
BisI GCNGC 4 cut(s) 237, 300, 303, 750
BlsI GCNGC 4 cut(s) 238, 301, 304, 751
Bme1390I CCNGG 4 cut(s) 27, 195, 388, 967
BmgT120I GGNCC 1 cut(s) 383
BmiI GGNNCC 3 cut(s) 47, 102, 385
BmrFI CCNGG 4 cut(s) 27, 195, 388, 967
BmrI ACTGGG 1 cut(s) 575
BmsI GCATC 3 cut(s) 144, 534, 930
BmuI ACTGGG 1 cut(s) 575
BpmI CTGGAG 1 cut(s) 1017
BpuEI CTTGAG 1 cut(s) 337
BpuMI CCSGG 1 cut(s) 27
BsaAI YACGTR 1 cut(s) 132
BsaJI CCNNGG 5 cut(s) 26, 193, 386, 387, 1056
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 55, 857
Bse118I RCCGGY 1 cut(s) 727
Bse1I ACTGG 1 cut(s) 581
Bse3DI GCAATG 3 cut(s) 279, 729, 828
BseBI CCWGG 3 cut(s) 195, 388, 967
BseDI CCNNGG 5 cut(s) 26, 193, 386, 387, 1056
BseGI GGATG 1 cut(s) 630
BseLI CCNNNNNNNGG 3 cut(s) 27, 55, 857
BseMI GCAATG 3 cut(s) 279, 729, 828
BseMII CTCAG 1 cut(s) 883
BseNI ACTGG 1 cut(s) 581
BseXI GCAGC 3 cut(s) 286, 314, 761
BsgI GTGCAG 1 cut(s) 395
BshFI GGCC 1 cut(s) 384
BshNI GGYRCC 2 cut(s) 45, 100
BsiSI CCGG 2 cut(s) 26, 728
BslFI GGGAC 1 cut(s) 175
BslI CCNNNNNNNGG 3 cut(s) 27, 55, 857
BsmFI GGGAC 1 cut(s) 175
BsnI GGCC 1 cut(s) 384
Bsp143I GATC 2 cut(s) 174, 228
BspACI CCGC 2 cut(s) 237, 861
BspANI GGCC 1 cut(s) 384
BspCNI CTCAG 1 cut(s) 882
BspHI TCATGA 1 cut(s) 225
BspLI GGNNCC 3 cut(s) 47, 102, 385
BspMAI CTGCAG 2 cut(s) 171, 304
BspPI GGATC 1 cut(s) 169
BspT107I GGYRCC 2 cut(s) 45, 100
BsrDI GCAATG 3 cut(s) 279, 729, 828
BsrFI RCCGGY 1 cut(s) 727
BsrI ACTGG 1 cut(s) 581
BssAI RCCGGY 1 cut(s) 727
BssECI CCNNGG 5 cut(s) 26, 193, 386, 387, 1056
BssMI GATC 2 cut(s) 174, 228
BssT1I CCWWGG 1 cut(s) 1056
Bst2UI CCWGG 3 cut(s) 195, 388, 967
Bst4CI ACNGT 2 cut(s) 187, 617
Bst6I CTCTTC 2 cut(s) 26, 795
BstBAI YACGTR 1 cut(s) 132
BstC8I GCNNGC 3 cut(s) 123, 549, 863
BstDEI CTNAG 4 cut(s) 654, 869, 948, 1077
BstF5I GGATG 1 cut(s) 630
BstKTI GATC 2 cut(s) 177, 231
BstMBI GATC 2 cut(s) 174, 228
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstNI CCWGG 3 cut(s) 195, 388, 967
BstNSI RCATGY 1 cut(s) 68
BstSCI CCNGG 4 cut(s) 25, 193, 386, 965
BstSFI CTRYAG 2 cut(s) 167, 300
BstV1I GCAGC 3 cut(s) 286, 314, 761
BstX2I RGATCY 1 cut(s) 174
BstYI RGATCY 1 cut(s) 174
BsuRI GGCC 1 cut(s) 384
BtsCI GGATG 1 cut(s) 630
BtsI GCAGTG 1 cut(s) 164
BtsIMutI CAGTG 2 cut(s) 164, 622
Cac8I GCNNGC 3 cut(s) 123, 549, 863
CciI TCATGA 1 cut(s) 225
Cfr10I RCCGGY 1 cut(s) 727
Cfr13I GGNCC 1 cut(s) 383
Csp6I GTAC 3 cut(s) 46, 101, 129
CviAII CATG 7 cut(s) 14, 50, 65, 226, 310, 695, 925
CviQI GTAC 3 cut(s) 46, 101, 129
DdeI CTNAG 4 cut(s) 654, 869, 948, 1077
DpnI GATC 2 cut(s) 176, 230
DpnII GATC 2 cut(s) 174, 228
DraIII CACNNNGTG 1 cut(s) 469
Eam1104I CTCTTC 2 cut(s) 26, 795
EarI CTCTTC 2 cut(s) 26, 795
Eco130I CCWWGG 1 cut(s) 1056
EcoRII CCWGG 3 cut(s) 193, 386, 965
EcoT14I CCWWGG 1 cut(s) 1056
EcoT22I ATGCAT 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 1056
FaeI CATG 7 cut(s) 17, 53, 68, 229, 313, 698, 928
FalI AAGNNNNNCTT 4 cut(s) 477, 509, 944, 976
FaqI GGGAC 1 cut(s) 175
FatI CATG 7 cut(s) 13, 49, 64, 225, 309, 694, 924
FauI CCCGC 1 cut(s) 854
FauNDI CATATG 1 cut(s) 553
Fnu4HI GCNGC 4 cut(s) 237, 300, 303, 750
FokI GGATG 1 cut(s) 617
Fsp4HI GCNGC 4 cut(s) 237, 300, 303, 750
FspBI CTAG 3 cut(s) 83, 267, 755
GluI GCNGC 4 cut(s) 237, 300, 303, 750
GsuI CTGGAG 1 cut(s) 1017
HaeIII GGCC 1 cut(s) 384
HapII CCGG 2 cut(s) 26, 728
Hin1II CATG 7 cut(s) 17, 53, 68, 229, 313, 698, 928
HincII GTYRAC 1 cut(s) 62
HindII GTYRAC 1 cut(s) 62
HinfI GANTC 3 cut(s) 17, 481, 840
HpaII CCGG 2 cut(s) 26, 728
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 2 cut(s) 62, 244
Hpy188I TCNGA 2 cut(s) 74, 839
Hpy188III TCNNGA 3 cut(s) 226, 623, 804
Hpy8I GTNNAC 2 cut(s) 62, 244
HpyAV CCTTC 5 cut(s) 79, 507, 525, 529, 789
HpyCH4III ACNGT 2 cut(s) 187, 617
HpyCH4IV ACGT 2 cut(s) 131, 845
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 4 cut(s) 654, 869, 948, 1077
HpySE526I ACGT 2 cut(s) 131, 845
Hsp92II CATG 7 cut(s) 17, 53, 68, 229, 313, 698, 928
KpnI GGTACC 2 cut(s) 49, 104
Kzo9I GATC 2 cut(s) 174, 228
LmnI GCTCC 3 cut(s) 341, 901, 1024
Lsp1109I GCAGC 3 cut(s) 286, 314, 761
LweI GCATC 3 cut(s) 144, 534, 930
MaeI CTAG 3 cut(s) 83, 267, 755
MaeII ACGT 2 cut(s) 131, 845
MaeIII GTNAC 2 cut(s) 461, 841
MalI GATC 2 cut(s) 176, 230
MboI GATC 2 cut(s) 174, 228
MboII GAAGA 5 cut(s) 43, 184, 223, 782, 905
MfeI CAATTG 2 cut(s) 330, 741
MflI RGATCY 1 cut(s) 174
MluCI AATT 5 cut(s) 274, 330, 741, 769, 976
MlyI GAGTC 2 cut(s) 26, 849
MnlI CCTC 5 cut(s) 27, 272, 644, 875, 1029
Mph1103I ATGCAT 1 cut(s) 15
MspA1I CMGCKG 2 cut(s) 239, 305
MspI CCGG 2 cut(s) 26, 728
MspR9I CCNGG 4 cut(s) 27, 195, 388, 967
MunI CAATTG 2 cut(s) 330, 741
MvaI CCWGG 3 cut(s) 195, 388, 967
MwoI GCNNNNNNNGC 1 cut(s) 341
NciI CCSGG 1 cut(s) 27
NdeI CATATG 1 cut(s) 553
NdeII GATC 2 cut(s) 174, 228
NlaIII CATG 7 cut(s) 17, 53, 68, 229, 313, 698, 928
NlaIV GGNNCC 3 cut(s) 47, 102, 385
NmuCI GTSAC 2 cut(s) 461, 841
NsiI ATGCAT 1 cut(s) 15
NspI RCATGY 1 cut(s) 68
PagI TCATGA 1 cut(s) 225
PasI CCCWGGG 1 cut(s) 387
PfeI GAWTC 1 cut(s) 481
PflMI CCANNNNNTGG 1 cut(s) 55
PkrI GCNGC 4 cut(s) 238, 301, 304, 751
PleI GAGTC 2 cut(s) 25, 848
PpsI GAGTC 2 cut(s) 25, 848
Ppu21I YACGTR 1 cut(s) 132
Psp6I CCWGG 3 cut(s) 193, 386, 965
PspGI CCWGG 3 cut(s) 193, 386, 965
PspN4I GGNNCC 3 cut(s) 47, 102, 385
PspPI GGNCC 1 cut(s) 383
PstI CTGCAG 2 cut(s) 171, 304
PsuI RGATCY 1 cut(s) 174
PvuII CAGCTG 1 cut(s) 305
RsaI GTAC 3 cut(s) 47, 102, 130
RsaNI GTAC 3 cut(s) 46, 101, 129
SatI GCNGC 4 cut(s) 237, 300, 303, 750
Sau3AI GATC 2 cut(s) 174, 228
Sau96I GGNCC 1 cut(s) 383
SchI GAGTC 2 cut(s) 26, 849
ScrFI CCNGG 4 cut(s) 27, 195, 388, 967
SfaNI GCATC 3 cut(s) 144, 534, 930
SfcI CTRYAG 2 cut(s) 167, 300
SmlI CTYRAG 1 cut(s) 316
SmoI CTYRAG 1 cut(s) 316
Sse9I AATT 5 cut(s) 274, 330, 741, 769, 976
SsiI CCGC 2 cut(s) 237, 861
SspI AATATT 1 cut(s) 1070
SspMI CTAG 3 cut(s) 83, 267, 755
StyD4I CCNGG 4 cut(s) 25, 193, 386, 965
StyI CCWWGG 1 cut(s) 1056
TaaI ACNGT 2 cut(s) 187, 617
TaiI ACGT 2 cut(s) 134, 848
TasI AATT 5 cut(s) 274, 330, 741, 769, 976
TauI GCSGC 1 cut(s) 239
TfiI GAWTC 1 cut(s) 481
TscAI CASTG 2 cut(s) 171, 622
TseFI GTSAC 2 cut(s) 461, 841
TseI GCWGC 3 cut(s) 299, 302, 749
Tsp45I GTSAC 2 cut(s) 461, 841
TspDTI ATGAA 4 cut(s) 211, 683, 782, 823
TspGWI ACGGA 1 cut(s) 10
TspRI CASTG 2 cut(s) 171, 622
Van91I CCANNNNNTGG 1 cut(s) 55
XapI RAATTY 1 cut(s) 769
XceI RCATGY 1 cut(s) 68
XspI CTAG 3 cut(s) 83, 267, 755
Zsp2I ATGCAT 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.