RchiOBHm_Chr5g0057301

Transmembrane amino acid transporter protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0005950
Physical Location & Seq
Reverse (-)
61207955 .. 61211268
3314 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33408

Sequence Viewer

Length: 1449 bp
ATGGATATTGAAGCAAAAGGTATTGATCAGAAGGAAAAGGATCTGAATGATTGGCTTCCCATCACAAGTTCTAGGACTGCAACCTGGTGGTACTCAGCTTTCCACAATGTCACCGCCATGGTTGGTGCTGGTGTGCTTGGTCTTCCCTTTGCCATGTCTCAACTTGGATGGGGACCTGGAGTTACTGTGATTGTTCTTTCATGGATTATCACCCTATACACCTTATGGCAGATGGTAGAGATGCATGAGTCGGTGCCGGGGAAGAGGTTTGATAGGCTGCTGCTGCTGTGCTTGCCTTACTGCTGTGAAGAATCCTTGTTGCTGAAAGCTGTAGCTGAGATGGCAGGACAAAGCATTGATCTTCATAACAATGGTAATCTCCTAAGACAAGGCTGGAGACTCAAATTCCTTGATTGTGCAGATGGTTCTCGTGGATTAGTTCATGATTTGCTAGGGCTTTGGATTGTGGTACCCCAACAACTAATGGTGCAATCTGGTACTTGCATCGTCTATATGATTACTGGTGGTAAATCACTGCAGAAGATCCATGATACCGTGTCCCCTGGAAAACCAATCAAAACCACCTACTTCATCATGATCTTCGCTGCTGTCCACTTTGTTATCTCTCACCTCCCTAGTTTCAATTCCATTGCTGGTATTTCTCTTGCTGCAGCTGTCATGTCCTTGAGCTACTCTACAGTTGCTTGGGGAGCTTCACTTCACAAAGGGGTTCAACCAGAAGTGCAGTATGGCCCCAGGGCTTCGACCAACACAGGAAATGTGTTCAACTTCTTTAGTGCTTTGGGAGATGTAGCTTTTTCTTTTGCTGGTCACAATGTGGTTTTGGAGATTCAAGCAACACTTCCTTCTACACCTGACAAGCCTTCCAAAAAACCAATGTGGAAGGGTGTGGTGCTTGCATATGTTGTGGTGGCTTTGTGCTATTTCCCAGTTGCTCTTATCGGTTATTGGGTGTTCGGAAACAGTGTTCAGGATAATATCCTCATATCATTGGAGAAACCTAAGTGGCTTATTGTTTCTGCTAATGCCTTTGTTGTTATTCATGTCATTGGGAGCTATCAGGTCTATGCAATGCCGGTGTTTGACACAATTGAAGCAGCTCTAGTGAAACAGATGAATTTCAAACCATCTTATTCTCTCCGCTTTATATCACGAAATCTATTTGTTGCAATGACCTTGTTCATCGGAGTCACGTTCCCTTTCTTTGGCGGGCTTCTCAGTTTCTTTGGAGGATTTGCTTTGGCTCCCACAACATATTTTCTTCCTTGCATCATGTGGCTCGTCATCTACAAACCTAAGAAGTTCAGCTTATCCTGGTTTGCAAATTGGTTCTGCATTATAGCTGGAGTGTTATTGCTGATTTTTGCTCCTATTGGTGCATTGAGGAATATCATACTTCAAGCCAAGGATTTCAAATTCTACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

482

Amino Acids

53.43

Weight (kDa)

8.95

Isoelectric Point (pI)

35.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 25 - 467 1e-93 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 37 - 85 1.6e-06 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 469
AccB1I GGYRCC 2 cut(s) 253, 469
AciI CCGC 3 cut(s) 114, 1162, 1230
AclWI GGATC 2 cut(s) 48, 538
AcsI RAATTY 3 cut(s) 404, 1138, 1436
AdeI CACNNNGTG 1 cut(s) 838
AfaI GTAC 3 cut(s) 92, 471, 499
AfiI CCNNNNNNNGG 1 cut(s) 1226
AgsI TTSAA 9 cut(s) 11, 643, 734, 787, 854, 1115, 1144, 1421, 1435
AjnI CCWGG 5 cut(s) 83, 175, 562, 755, 1334
AloI GAACNNNNNNTCC 2 cut(s) 972, 1004
Alw26I GTCTC 2 cut(s) 162, 391
AlwI GGATC 2 cut(s) 48, 538
AoxI GGCC 1 cut(s) 751
ApeKI GCWGC 7 cut(s) 277, 280, 283, 605, 668, 671, 1118
ApoI RAATTY 3 cut(s) 404, 1138, 1436
Asp718I GGTACC 1 cut(s) 469
AspS9I GGNCC 2 cut(s) 173, 752
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 3 cut(s) 103, 202, 620
AvaII GGWCC 1 cut(s) 173
BanI GGYRCC 2 cut(s) 253, 469
BauI CACGAG 1 cut(s) 429
BbsI GAAGAC 1 cut(s) 134
BbvI GCAGC 7 cut(s) 264, 267, 270, 592, 655, 683, 1130
BccI CCATC 6 cut(s) 68, 162, 226, 334, 416, 1156
BciT130I CCWGG 5 cut(s) 85, 177, 564, 757, 1336
BclI TGATCA 1 cut(s) 25
BcnI CCSGG 1 cut(s) 258
BcoDI GTCTC 2 cut(s) 162, 391
BfaI CTAG 4 cut(s) 72, 452, 636, 1124
BfmI CTRYAG 4 cut(s) 330, 536, 669, 696
BisI GCNGC 7 cut(s) 278, 281, 284, 606, 669, 672, 1119
BlsI GCNGC 7 cut(s) 279, 282, 285, 607, 670, 673, 1120
Bme1390I CCNGG 6 cut(s) 85, 177, 258, 564, 757, 1336
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 2 cut(s) 173, 752
BmiI GGNNCC 5 cut(s) 174, 255, 471, 754, 1266
BmrFI CCNGG 6 cut(s) 85, 177, 258, 564, 757, 1336
BmrI ACTGGG 1 cut(s) 944
BmsI GCATC 3 cut(s) 231, 513, 1299
BmuI ACTGGG 1 cut(s) 944
BpiI GAAGAC 1 cut(s) 134
BpmI CTGGAG 3 cut(s) 198, 415, 1386
BpuEI CTTGAG 1 cut(s) 706
BpuMI CCSGG 1 cut(s) 258
BsaJI CCNNGG 6 cut(s) 117, 257, 562, 755, 756, 1425
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 1226
Bse118I RCCGGY 1 cut(s) 1096
Bse1I ACTGG 2 cut(s) 526, 950
Bse3DI GCAATG 3 cut(s) 648, 1098, 1197
BseBI CCWGG 5 cut(s) 85, 177, 564, 757, 1336
BseDI CCNNGG 6 cut(s) 117, 257, 562, 755, 756, 1425
BseGI GGATG 1 cut(s) 173
BseLI CCNNNNNNNGG 1 cut(s) 1226
BseMI GCAATG 3 cut(s) 648, 1098, 1197
BseMII CTCAG 3 cut(s) 108, 327, 1252
BseNI ACTGG 2 cut(s) 526, 950
BseXI GCAGC 7 cut(s) 264, 267, 270, 592, 655, 683, 1130
BsgI GTGCAG 2 cut(s) 438, 764
BshFI GGCC 1 cut(s) 753
BshNI GGYRCC 2 cut(s) 253, 469
BsiSI CCGG 2 cut(s) 257, 1097
BslFI GGGAC 2 cut(s) 186, 544
BslI CCNNNNNNNGG 1 cut(s) 1226
BsmAI GTCTC 2 cut(s) 162, 391
BsmFI GGGAC 2 cut(s) 186, 544
BsnI GGCC 1 cut(s) 753
Bsp143I GATC 5 cut(s) 25, 40, 358, 543, 597
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 3 cut(s) 114, 1162, 1230
BspANI GGCC 1 cut(s) 753
BspCNI CTCAG 3 cut(s) 107, 328, 1251
BspHI TCATGA 2 cut(s) 442, 594
BspLI GGNNCC 5 cut(s) 174, 255, 471, 754, 1266
BspMAI CTGCAG 2 cut(s) 540, 673
BspPI GGATC 2 cut(s) 48, 538
BspT107I GGYRCC 2 cut(s) 253, 469
BsrDI GCAATG 3 cut(s) 648, 1098, 1197
BsrFI RCCGGY 1 cut(s) 1096
BsrI ACTGG 2 cut(s) 526, 950
BssAI RCCGGY 1 cut(s) 1096
BssECI CCNNGG 6 cut(s) 117, 257, 562, 755, 756, 1425
BssMI GATC 5 cut(s) 25, 40, 358, 543, 597
BssSI CACGAG 1 cut(s) 429
BssT1I CCWWGG 2 cut(s) 117, 1425
Bst2BI CACGAG 1 cut(s) 429
Bst2UI CCWGG 5 cut(s) 85, 177, 564, 757, 1336
Bst4CI ACNGT 4 cut(s) 187, 556, 700, 986
Bst6I CTCTTC 1 cut(s) 257
BstC8I GCNNGC 3 cut(s) 293, 918, 1232
BstDEI CTNAG 6 cut(s) 94, 336, 383, 1023, 1238, 1317
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 173
BstKTI GATC 5 cut(s) 28, 43, 361, 546, 600
BstMAI GTCTC 2 cut(s) 162, 391
BstMBI GATC 5 cut(s) 25, 40, 358, 543, 597
BstMWI GCNNNNNNNGC 4 cut(s) 283, 292, 341, 710
BstNI CCWGG 5 cut(s) 85, 177, 564, 757, 1336
BstSCI CCNGG 6 cut(s) 83, 175, 256, 562, 755, 1334
BstSFI CTRYAG 4 cut(s) 330, 536, 669, 696
BstV1I GCAGC 7 cut(s) 264, 267, 270, 592, 655, 683, 1130
BstV2I GAAGAC 1 cut(s) 134
BstX2I RGATCY 2 cut(s) 40, 543
BstYI RGATCY 2 cut(s) 40, 543
BsuRI GGCC 1 cut(s) 753
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 1 cut(s) 173
BtsI GCAGTG 1 cut(s) 533
BtsIMutI CAGTG 2 cut(s) 533, 991
Cac8I GCNNGC 3 cut(s) 293, 918, 1232
CciI TCATGA 2 cut(s) 442, 594
Cfr10I RCCGGY 1 cut(s) 1096
Cfr13I GGNCC 2 cut(s) 173, 752
CsiI ACCWGGT 1 cut(s) 83
Csp6I GTAC 3 cut(s) 91, 470, 498
CviQI GTAC 3 cut(s) 91, 470, 498
DdeI CTNAG 6 cut(s) 94, 336, 383, 1023, 1238, 1317
DpnI GATC 5 cut(s) 27, 42, 360, 545, 599
DpnII GATC 5 cut(s) 25, 40, 358, 543, 597
DraIII CACNNNGTG 1 cut(s) 838
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Eco130I CCWWGG 2 cut(s) 117, 1425
Eco47I GGWCC 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 173
EcoRII CCWGG 5 cut(s) 83, 175, 562, 755, 1334
EcoT14I CCWWGG 2 cut(s) 117, 1425
EcoT22I ATGCAT 1 cut(s) 246
ErhI CCWWGG 2 cut(s) 117, 1425
FalI AAGNNNNNCTT 4 cut(s) 846, 878, 1313, 1345
FaqI GGGAC 2 cut(s) 186, 544
FauI CCCGC 1 cut(s) 1223
FauNDI CATATG 1 cut(s) 922
FbaI TGATCA 1 cut(s) 25
Fnu4HI GCNGC 7 cut(s) 278, 281, 284, 606, 669, 672, 1119
FokI GGATG 1 cut(s) 180
Fsp4HI GCNGC 7 cut(s) 278, 281, 284, 606, 669, 672, 1119
FspBI CTAG 4 cut(s) 72, 452, 636, 1124
GluI GCNGC 7 cut(s) 278, 281, 284, 606, 669, 672, 1119
GsuI CTGGAG 3 cut(s) 198, 415, 1386
HaeIII GGCC 1 cut(s) 753
HapII CCGG 2 cut(s) 257, 1097
HinfI GANTC 5 cut(s) 248, 311, 399, 850, 1209
HpaII CCGG 2 cut(s) 257, 1097
HphI GGTGA 3 cut(s) 103, 202, 620
Hpy166II GTNNAC 1 cut(s) 613
Hpy188I TCNGA 4 cut(s) 30, 45, 980, 1208
Hpy188III TCNNGA 5 cut(s) 443, 595, 992, 1173, 1446
Hpy8I GTNNAC 1 cut(s) 613
HpyAV CCTTC 4 cut(s) 25, 876, 894, 898
HpyCH4III ACNGT 4 cut(s) 187, 556, 700, 986
HpyCH4IV ACGT 1 cut(s) 1214
HpyF10VI GCNNNNNNNGC 4 cut(s) 283, 292, 341, 710
HpyF3I CTNAG 6 cut(s) 94, 336, 383, 1023, 1238, 1317
HpySE526I ACGT 1 cut(s) 1214
KpnI GGTACC 1 cut(s) 473
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 5 cut(s) 25, 40, 358, 543, 597
LmnI GCTCC 4 cut(s) 710, 1074, 1270, 1393
Lsp1109I GCAGC 7 cut(s) 264, 267, 270, 592, 655, 683, 1130
LweI GCATC 3 cut(s) 231, 513, 1299
MabI ACCWGGT 1 cut(s) 83
MaeI CTAG 4 cut(s) 72, 452, 636, 1124
MaeII ACGT 1 cut(s) 1214
MaeIII GTNAC 4 cut(s) 109, 181, 830, 1210
MalI GATC 5 cut(s) 27, 42, 360, 545, 599
MboI GATC 5 cut(s) 25, 40, 358, 543, 597
MboII GAAGA 7 cut(s) 134, 274, 320, 353, 553, 592, 1274
MfeI CAATTG 1 cut(s) 1110
MflI RGATCY 2 cut(s) 40, 543
MluCI AATT 6 cut(s) 404, 643, 1110, 1138, 1345, 1436
MlyI GAGTC 3 cut(s) 257, 393, 1218
MnlI CCTC 5 cut(s) 258, 641, 1013, 1244, 1398
Mph1103I ATGCAT 1 cut(s) 246
MslI CAYNNNNRTG 2 cut(s) 116, 369
MspA1I CMGCKG 1 cut(s) 674
MspI CCGG 2 cut(s) 257, 1097
MspR9I CCNGG 6 cut(s) 85, 177, 258, 564, 757, 1336
MunI CAATTG 1 cut(s) 1110
MvaI CCWGG 5 cut(s) 85, 177, 564, 757, 1336
MwoI GCNNNNNNNGC 4 cut(s) 283, 292, 341, 710
NciI CCSGG 1 cut(s) 258
NcoI CCATGG 1 cut(s) 117
NdeI CATATG 1 cut(s) 922
NdeII GATC 5 cut(s) 25, 40, 358, 543, 597
NlaIV GGNNCC 5 cut(s) 174, 255, 471, 754, 1266
NmuCI GTSAC 3 cut(s) 109, 830, 1210
NsiI ATGCAT 1 cut(s) 246
PagI TCATGA 2 cut(s) 442, 594
PasI CCCWGGG 1 cut(s) 756
PfeI GAWTC 2 cut(s) 311, 850
PkrI GCNGC 7 cut(s) 279, 282, 285, 607, 670, 673, 1120
PleI GAGTC 3 cut(s) 256, 393, 1217
PpsI GAGTC 3 cut(s) 256, 393, 1217
PpuMI RGGWCCY 1 cut(s) 173
Psp5II RGGWCCY 1 cut(s) 173
Psp6I CCWGG 5 cut(s) 83, 175, 562, 755, 1334
PspGI CCWGG 5 cut(s) 83, 175, 562, 755, 1334
PspN4I GGNNCC 5 cut(s) 174, 255, 471, 754, 1266
PspPI GGNCC 2 cut(s) 173, 752
PspPPI RGGWCCY 1 cut(s) 173
PstI CTGCAG 2 cut(s) 540, 673
PsuI RGATCY 2 cut(s) 40, 543
PvuII CAGCTG 1 cut(s) 674
RsaI GTAC 3 cut(s) 92, 471, 499
RsaNI GTAC 3 cut(s) 91, 470, 498
RseI CAYNNNNRTG 2 cut(s) 116, 369
SatI GCNGC 7 cut(s) 278, 281, 284, 606, 669, 672, 1119
Sau3AI GATC 5 cut(s) 25, 40, 358, 543, 597
Sau96I GGNCC 2 cut(s) 173, 752
SchI GAGTC 3 cut(s) 257, 393, 1218
ScrFI CCNGG 6 cut(s) 85, 177, 258, 564, 757, 1336
SexAI ACCWGGT 1 cut(s) 83
SfaNI GCATC 3 cut(s) 231, 513, 1299
SfcI CTRYAG 4 cut(s) 330, 536, 669, 696
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 2 cut(s) 116, 369
SmlI CTYRAG 1 cut(s) 685
SmoI CTYRAG 1 cut(s) 685
Sse9I AATT 6 cut(s) 404, 643, 1110, 1138, 1345, 1436
SsiI CCGC 3 cut(s) 114, 1162, 1230
SspMI CTAG 4 cut(s) 72, 452, 636, 1124
StyD4I CCNGG 6 cut(s) 83, 175, 256, 562, 755, 1334
StyI CCWWGG 2 cut(s) 117, 1425
TaaI ACNGT 4 cut(s) 187, 556, 700, 986
TaiI ACGT 1 cut(s) 1217
TaqI TCGA 1 cut(s) 764
TasI AATT 6 cut(s) 404, 643, 1110, 1138, 1345, 1436
TfiI GAWTC 2 cut(s) 311, 850
TscAI CASTG 2 cut(s) 540, 991
TseFI GTSAC 3 cut(s) 109, 830, 1210
TseI GCWGC 7 cut(s) 277, 280, 283, 605, 668, 671, 1118
Tsp45I GTSAC 3 cut(s) 109, 830, 1210
TspDTI ATGAA 7 cut(s) 189, 353, 431, 580, 1052, 1151, 1192
TspRI CASTG 2 cut(s) 540, 991
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 3 cut(s) 404, 1138, 1436
XspI CTAG 4 cut(s) 72, 452, 636, 1124
Zsp2I ATGCAT 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.