Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005950

Physical Location & Seq

Genomic Coordinates Forward (+)

57978905 .. 57980861

Gene Structure 1957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00264280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGATATTGAAGCTAAAGGTATTGATCAGAAGGAAAAGGATCTGAATGACTGGCTTCCCATCACAAGTTCTAGGACTGCAACCTGGTGGTACTCTGCTTTCCACAATGTCACTGCCATGGTTGGTGCTGGCGTGCTTGGTCTTCCCTTTGCCATGTCTCAACTTGGATGGGGACCTGGAGTCACTGTGATGGTTCTTTCATGGATTATCACCCTATACACCTTATGGCAGATGGTAGAGATGCATGAGTCTGTGCCGGGGAAGAGGTTTGACAGGTATCATGAGTTGGGTCAACATGCCTTCGGAGAAAAGCTAGGGCTTTGGATTGTGGTACCCCAACAACTAATGGTGCAATTTGGTGTCTGCATCGTCTATATGATTACAGGTGGTAAATCACTGCAGAAGATCCATGACACTGTGGCCCCTGGAAAACCAATCAAAACCACCTACTTCATCATGATCTTCGCCGCTGTCCACTTTTTTATCTCTCACCTCCCTAGCTTCAATTCCATTGCTGGTATTTCTCTTGCTGCAGCTGTCATGTCCTTGAGCTACTCTACAGTTGCTTGGGGAGCTTCTCTTCACAAAGGGGTTAAACTTGAAGTACAGTATGGCCCCAGGGCTTCAACCACGACAGGAAATGTGTTCAATTTCTTTAGTGCTTTGGGAGATGTAGCTTTTGCTTTTGCCGGTCACAATGTGGTTTTGGAGATTCAAGCAACAATTCCTTCTACACCTGACAAGCCCTCCAAAAAACCAATGTGGAAGGGTGTGATGCTTGCATATGTTGTGGTGGCTTTGTGCTATTTCCCAGTTGCTCTTATAGGTTATTGGGTATTCGGAAACAGTGTTCAGGATAACATCCTCATATCATTGGAGAAACCTAAGTGGCTAATTGTTATTGCTAATGCCTTTGTTGTTATTCATGTGATTGGAAGTTATCAGGTCTTTGCAATGCCGGTGTTTGACACAATTGAAGCAGCTCTAGTGAGACAGATGAATTTCAAACCATCTTATTCTCTTCGCTTTATGTCACGAAATCTATTTGTTGGTAATTATCATTTTCTTTCCCATGTCTCTACTCACTTGGTAGATCTTAATCTCGAGTTAACTTCACACATCATACATGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

378

Amino Acids

42.05

Weight (kDa)

8.37

Isoelectric Point (pI)

30.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	25 - 366	2.4e-90	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	37 - 162	1.8e-09	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005950)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07660
malus_domestica	MD06G1148600.v1.1 MD14G1162700.v1.1
prunus_persica	Prupe.5G155600_v2.0.a1 Prupe.5G155600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380391 RchiOBHm_Chr5g0057301 RchiOBHm_Chr7g0190811
rosa_laevigata	RLG00000004492 RLG00000004494 RLG00000026307
rosa_multiflora	Rmu_sc0001334.1_g000017 Rmu_sc0005371.1_g000002
rosa_roxburghii	Rroxscaffold_3G00264280 Rroxscaffold_4G00279430
rosa_rugosa	Rorug01G0420300 Rorug01G0420400 Rorug01G0420500 Rorug06G0507300
rosa_samantha	Rh1BG399900 Rh1CG414600 Rh7AG113900 Rh7BG116500 Rh7CG119200
rosa_wichuraiana	Rw1G038710 Rw5G035360 Rw7G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	331
AccB1I	GGYRCC	1 cut(s)	331
AciI	CCGC	1 cut(s)	468
AclWI	GGATC	2 cut(s)	48, 400
AcsI	RAATTY	1 cut(s)	1000
AdeI	CACNNNGTG	1 cut(s)	700
AfaI	GTAC	3 cut(s)	92, 333, 606
AgsI	TTSAA	8 cut(s)	11, 505, 602, 627, 649, 716, 977, 1006
AhdI	GACNNNNNGTC	1 cut(s)	179
AjnI	CCWGG	4 cut(s)	83, 175, 424, 617
AloI	GAACNNNNNNTCC	2 cut(s)	834, 866
AluBI	AGCT	8 cut(s)	14, 313, 501, 536, 552, 575, 677, 983
AluI	AGCT	8 cut(s)	14, 313, 501, 536, 552, 575, 677, 983
Alw26I	GTCTC	3 cut(s)	162, 985, 1081
AlwI	GGATC	2 cut(s)	48, 400
Ama87I	CYCGRG	1 cut(s)	1103
AoxI	GGCC	2 cut(s)	420, 613
ApeKI	GCWGC	3 cut(s)	530, 533, 980
ApoI	RAATTY	1 cut(s)	1000
Asp718I	GGTACC	1 cut(s)	331
AspS9I	GGNCC	3 cut(s)	173, 421, 614
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	2 cut(s)	202, 482
AvaI	CYCGRG	1 cut(s)	1103
AvaII	GGWCC	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	134
BbvI	GCAGC	3 cut(s)	517, 545, 992
BccI	CCATC	5 cut(s)	68, 162, 184, 226, 1018
BciT130I	CCWGG	4 cut(s)	85, 177, 426, 619
BclI	TGATCA	1 cut(s)	25
BcnI	CCSGG	1 cut(s)	258
BcoDI	GTCTC	3 cut(s)	162, 985, 1081
BfaI	CTAG	4 cut(s)	72, 314, 498, 986
BfmI	CTRYAG	3 cut(s)	398, 531, 558
BglII	AGATCT	1 cut(s)	1093
BisI	GCNGC	4 cut(s)	468, 531, 534, 981
BlsI	GCNGC	4 cut(s)	469, 532, 535, 982
Bme1390I	CCNGG	5 cut(s)	85, 177, 258, 426, 619
Bme18I	GGWCC	1 cut(s)	173
BmeRI	GACNNNNNGTC	1 cut(s)	179
BmeT110I	CYCGRG	1 cut(s)	1103
BmgT120I	GGNCC	3 cut(s)	173, 421, 614
BmiI	GGNNCC	4 cut(s)	174, 333, 423, 616
BmrFI	CCNGG	5 cut(s)	85, 177, 258, 426, 619
BmrI	ACTGGG	1 cut(s)	806
BmsI	GCATC	3 cut(s)	231, 375, 765
BmuI	ACTGGG	1 cut(s)	806
BpiI	GAAGAC	1 cut(s)	134
BpmI	CTGGAG	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	568
BpuMI	CCSGG	1 cut(s)	258
BsaBI	GATNNNNATC	1 cut(s)	1098
BsaJI	CCNNGG	5 cut(s)	117, 257, 424, 617, 618
BsaXI	ACNNNNNCTCC	4 cut(s)	171, 201, 731, 761
Bse118I	RCCGGY	2 cut(s)	689, 958
Bse1I	ACTGG	2 cut(s)	56, 812
Bse3DI	GCAATG	2 cut(s)	510, 960
Bse8I	GATNNNNATC	1 cut(s)	1098
BseBI	CCWGG	4 cut(s)	85, 177, 426, 619
BseDI	CCNNGG	5 cut(s)	117, 257, 424, 617, 618
BseGI	GGATG	2 cut(s)	173, 861
BseJI	GATNNNNATC	1 cut(s)	1098
BseMI	GCAATG	2 cut(s)	510, 960
BseNI	ACTGG	2 cut(s)	56, 812
BseXI	GCAGC	3 cut(s)	517, 545, 992
BshFI	GGCC	2 cut(s)	422, 615
BshNI	GGYRCC	1 cut(s)	331
BsiHKCI	CYCGRG	1 cut(s)	1103
BsiSI	CCGG	3 cut(s)	257, 690, 959
BslFI	GGGAC	1 cut(s)	186
BsmAI	GTCTC	3 cut(s)	162, 985, 1081
BsmFI	GGGAC	1 cut(s)	186
BsnI	GGCC	2 cut(s)	422, 615
BsoBI	CYCGRG	1 cut(s)	1103
Bsp143I	GATC	5 cut(s)	25, 40, 405, 459, 1093
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	1 cut(s)	468
BspANI	GGCC	2 cut(s)	422, 615
BspHI	TCATGA	2 cut(s)	280, 456
BspLI	GGNNCC	4 cut(s)	174, 333, 423, 616
BspMAI	CTGCAG	2 cut(s)	402, 535
BspPI	GGATC	2 cut(s)	48, 400
BspT107I	GGYRCC	1 cut(s)	331
BsrDI	GCAATG	2 cut(s)	510, 960
BsrFI	RCCGGY	2 cut(s)	689, 958
BsrI	ACTGG	2 cut(s)	56, 812
BssAI	RCCGGY	2 cut(s)	689, 958
BssECI	CCNNGG	5 cut(s)	117, 257, 424, 617, 618
BssMI	GATC	5 cut(s)	25, 40, 405, 459, 1093
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	4 cut(s)	85, 177, 426, 619
Bst4CI	ACNGT	5 cut(s)	187, 418, 562, 609, 848
Bst6I	CTCTTC	3 cut(s)	257, 585, 1026
BstC8I	GCNNGC	3 cut(s)	130, 134, 780
BstDEI	CTNAG	1 cut(s)	885
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	2 cut(s)	173, 861
BstKTI	GATC	5 cut(s)	28, 43, 408, 462, 1096
BstMAI	GTCTC	3 cut(s)	162, 985, 1081
BstMBI	GATC	5 cut(s)	25, 40, 405, 459, 1093
BstMWI	GCNNNNNNNGC	1 cut(s)	572
BstNI	CCWGG	4 cut(s)	85, 177, 426, 619
BstNSI	RCATGY	1 cut(s)	299
BstSCI	CCNGG	5 cut(s)	83, 175, 256, 424, 617
BstSFI	CTRYAG	3 cut(s)	398, 531, 558
BstV1I	GCAGC	3 cut(s)	517, 545, 992
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	3 cut(s)	40, 405, 1093
BstYI	RGATCY	3 cut(s)	40, 405, 1093
BsuRI	GGCC	2 cut(s)	422, 615
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	2 cut(s)	173, 861
BtsI	GCAGTG	2 cut(s)	111, 395
BtsIMutI	CAGTG	5 cut(s)	111, 183, 395, 414, 853
Cac8I	GCNNGC	3 cut(s)	130, 134, 780
CciI	TCATGA	2 cut(s)	280, 456
Cfr10I	RCCGGY	2 cut(s)	689, 958
Cfr13I	GGNCC	3 cut(s)	173, 421, 614
CsiI	ACCWGGT	1 cut(s)	83
Csp6I	GTAC	3 cut(s)	91, 332, 605
CviQI	GTAC	3 cut(s)	91, 332, 605
DdeI	CTNAG	1 cut(s)	885
DpnI	GATC	5 cut(s)	27, 42, 407, 461, 1095
DpnII	GATC	5 cut(s)	25, 40, 405, 459, 1093
DraIII	CACNNNGTG	1 cut(s)	700
DriI	GACNNNNNGTC	1 cut(s)	179
Eam1104I	CTCTTC	3 cut(s)	257, 585, 1026
Eam1105I	GACNNNNNGTC	1 cut(s)	179
EarI	CTCTTC	3 cut(s)	257, 585, 1026
Eco130I	CCWWGG	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	173
Eco88I	CYCGRG	1 cut(s)	1103
EcoO109I	RGGNCCY	1 cut(s)	173
EcoRII	CCWGG	4 cut(s)	83, 175, 424, 617
EcoT14I	CCWWGG	1 cut(s)	117
EcoT22I	ATGCAT	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	117
FaqI	GGGAC	1 cut(s)	186
FauNDI	CATATG	1 cut(s)	784
FbaI	TGATCA	1 cut(s)	25
Fnu4HI	GCNGC	4 cut(s)	468, 531, 534, 981
FokI	GGATG	2 cut(s)	180, 848
Fsp4HI	GCNGC	4 cut(s)	468, 531, 534, 981
FspBI	CTAG	4 cut(s)	72, 314, 498, 986
GluI	GCNGC	4 cut(s)	468, 531, 534, 981
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	422, 615
HapII	CCGG	3 cut(s)	257, 690, 959
HincII	GTYRAC	2 cut(s)	293, 1110
HindII	GTYRAC	2 cut(s)	293, 1110
HinfI	GANTC	4 cut(s)	180, 248, 712, 1130
HpaI	GTTAAC	1 cut(s)	1110
HpaII	CCGG	3 cut(s)	257, 690, 959
HphI	GGTGA	2 cut(s)	202, 482
Hpy166II	GTNNAC	3 cut(s)	293, 475, 1110
Hpy188I	TCNGA	4 cut(s)	30, 45, 305, 842
Hpy188III	TCNNGA	6 cut(s)	281, 457, 854, 1035, 1103, 1134
Hpy8I	GTNNAC	3 cut(s)	293, 475, 1110
HpyAV	CCTTC	4 cut(s)	25, 310, 738, 760
HpyCH4III	ACNGT	5 cut(s)	187, 418, 562, 609, 848
HpyCH4V	TGCA	8 cut(s)	80, 244, 352, 366, 400, 533, 782, 953
HpyF10VI	GCNNNNNNNGC	1 cut(s)	572
HpyF3I	CTNAG	1 cut(s)	885
KpnI	GGTACC	1 cut(s)	335
Ksp22I	TGATCA	1 cut(s)	25
KspAI	GTTAAC	1 cut(s)	1110
Kzo9I	GATC	5 cut(s)	25, 40, 405, 459, 1093
LmnI	GCTCC	1 cut(s)	572
Lsp1109I	GCAGC	3 cut(s)	517, 545, 992
LweI	GCATC	3 cut(s)	231, 375, 765
MabI	ACCWGGT	1 cut(s)	83
MaeI	CTAG	4 cut(s)	72, 314, 498, 986
MaeIII	GTNAC	4 cut(s)	109, 181, 692, 1032
MalI	GATC	5 cut(s)	27, 42, 407, 461, 1095
MboI	GATC	5 cut(s)	25, 40, 405, 459, 1093
MboII	GAAGA	6 cut(s)	134, 274, 415, 454, 572, 1013
MfeI	CAATTG	1 cut(s)	972
MflI	RGATCY	3 cut(s)	40, 405, 1093
MluCI	AATT	8 cut(s)	353, 505, 649, 723, 894, 972, 1000, 1054
MlyI	GAGTC	2 cut(s)	189, 257
MnlI	CCTC	4 cut(s)	258, 503, 757, 875
Mph1103I	ATGCAT	1 cut(s)	246
MseI	TTAA	3 cut(s)	594, 1098, 1109
MslI	CAYNNNNRTG	2 cut(s)	116, 188
MspA1I	CMGCKG	2 cut(s)	470, 536
MspI	CCGG	3 cut(s)	257, 690, 959
MspR9I	CCNGG	5 cut(s)	85, 177, 258, 426, 619
MunI	CAATTG	1 cut(s)	972
MvaI	CCWGG	4 cut(s)	85, 177, 426, 619
MwoI	GCNNNNNNNGC	1 cut(s)	572
NciI	CCSGG	1 cut(s)	258
NcoI	CCATGG	1 cut(s)	117
NdeI	CATATG	1 cut(s)	784
NdeII	GATC	5 cut(s)	25, 40, 405, 459, 1093
NlaIV	GGNNCC	4 cut(s)	174, 333, 423, 616
NmuCI	GTSAC	4 cut(s)	109, 181, 692, 1032
NsiI	ATGCAT	1 cut(s)	246
NspI	RCATGY	1 cut(s)	299
PaeR7I	CTCGAG	1 cut(s)	1103
PagI	TCATGA	2 cut(s)	280, 456
PasI	CCCWGGG	1 cut(s)	618
PfeI	GAWTC	1 cut(s)	712
PkrI	GCNGC	4 cut(s)	469, 532, 535, 982
PleI	GAGTC	2 cut(s)	188, 256
PpsI	GAGTC	2 cut(s)	188, 256
PpuMI	RGGWCCY	1 cut(s)	173
Psp5II	RGGWCCY	1 cut(s)	173
Psp6I	CCWGG	4 cut(s)	83, 175, 424, 617
PspGI	CCWGG	4 cut(s)	83, 175, 424, 617
PspN4I	GGNNCC	4 cut(s)	174, 333, 423, 616
PspPI	GGNCC	3 cut(s)	173, 421, 614
PspPPI	RGGWCCY	1 cut(s)	173
PstI	CTGCAG	2 cut(s)	402, 535
PsuI	RGATCY	3 cut(s)	40, 405, 1093
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	3 cut(s)	92, 333, 606
RsaNI	GTAC	3 cut(s)	91, 332, 605
RseI	CAYNNNNRTG	2 cut(s)	116, 188
SaqAI	TTAA	3 cut(s)	594, 1098, 1109
SatI	GCNGC	4 cut(s)	468, 531, 534, 981
Sau3AI	GATC	5 cut(s)	25, 40, 405, 459, 1093
Sau96I	GGNCC	3 cut(s)	173, 421, 614
SchI	GAGTC	2 cut(s)	189, 257
ScrFI	CCNGG	5 cut(s)	85, 177, 258, 426, 619
SexAI	ACCWGGT	1 cut(s)	83
SfaNI	GCATC	3 cut(s)	231, 375, 765
SfcI	CTRYAG	3 cut(s)	398, 531, 558
Sfr274I	CTCGAG	1 cut(s)	1103
SinI	GGWCC	1 cut(s)	173
SlaI	CTCGAG	1 cut(s)	1103
SmiMI	CAYNNNNRTG	2 cut(s)	116, 188
SmlI	CTYRAG	2 cut(s)	547, 1103
SmoI	CTYRAG	2 cut(s)	547, 1103
Sse9I	AATT	8 cut(s)	353, 505, 649, 723, 894, 972, 1000, 1054
SsiI	CCGC	1 cut(s)	468
SspMI	CTAG	4 cut(s)	72, 314, 498, 986
StyD4I	CCNGG	5 cut(s)	83, 175, 256, 424, 617
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	5 cut(s)	187, 418, 562, 609, 848
TaqI	TCGA	1 cut(s)	1104
TasI	AATT	8 cut(s)	353, 505, 649, 723, 894, 972, 1000, 1054
TatI	WGTACW	1 cut(s)	604
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	1 cut(s)	712
Tru1I	TTAA	3 cut(s)	594, 1098, 1109
Tru9I	TTAA	3 cut(s)	594, 1098, 1109
TscAI	CASTG	5 cut(s)	118, 190, 402, 421, 853
TseFI	GTSAC	4 cut(s)	109, 181, 692, 1032
TseI	GCWGC	3 cut(s)	530, 533, 980
Tsp45I	GTSAC	4 cut(s)	109, 181, 692, 1032
TspDTI	ATGAA	4 cut(s)	189, 442, 914, 1013
TspRI	CASTG	5 cut(s)	118, 190, 402, 421, 853
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	1000
XceI	RCATGY	1 cut(s)	299
XhoI	CTCGAG	1 cut(s)	1103
XspI	CTAG	4 cut(s)	72, 314, 498, 986
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.