Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005950

Physical Location & Seq

Genomic Coordinates Reverse (-)

13909322 .. 13912317

Gene Structure 2996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G155600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGAAAAAAGTCAAGAAACAAAAGATATCAATGACTGGCTTCCCATCACAAAATCAAGGAACGCAAACTGGTGGTACTCTGCTTTCCACAATGTCACTGCCATGGTTGGTGCTGGTGTGCTTGGCCTCCCCTATGCCATGTCTCAACTTGGATGGGGCCCTGGAGTTGCTGTGCTGGTTCTTTCATGGATTATTACTCTGTACACCTTATGGCAGATGGTAGAGATGCATGAAATTGTGCCTGGGAAGAGGTTTGATAGGTACCATGAGTTGGGGCAGCATGCCTTTGGAGAAAAGCTTGGGCTTTGGGTTGTGGTGCCCCAACAATTAATGGTTGAATGTGGAGTGTGCATAGTTTATATGATTACAGGTGGCAATTCCATCAAGAAGATTCATGATACTCTGTGCCCTAATTGCAAATCTATCAAAACCACCTACTTCATCATGATCTTTGCCTCTGTCCACTTTGTTCTCTCTCACCTCCCTAGCTTCAATTCCATAGCTGGTGTTTCTCTTGCTGCTGCTGTTATGTCCTTGAGCTACTCTACCATTGCTTGGACAGCTTCTGTGCACAAAGGGGTTGATCCAGAAGTGCAGTATGGTCCCAAGGCTTCAAGCACTGCAGGAAATGTGTTCAACTTCTTTAGTGCTTTGGGAAATGTAGCTTTTGCTTTTGCTGGGCACAACGTGGTTTTGGAGATTCAAGCAACAATTCCTTCTACACCAGAAAAGCCTTCCAAAAAACCCATGTGGAAGGGTGTGTTTATTGCTTATGTTGTGGTCGCATTGTGCTATTTCCCTGTTGCTATGATCGGTTACTGGGTGTTTGGAAACAACGTCGAAGATAACATCCTCATATCGTTGCAGAAGCCTCGTTGGCTTATAGCTCTTGCTAATTTCTTTGTTGTTATACATGTCATTGGAAGTTATCAGGTCTTTGCAATGCCAGTGTTTGACATGCTGGAATCATTTCTAGTAACAGTGATGAAATTCAAGCCATCTATGTCACTTCGCTTCCTAACACGAACAGCATTTGTTGCATTCACCTTGTTCATCGGAATCACATTCCCTTTCTTTGGTGGGCTTCTCAGTTTCTTTGGAGGATTTGCTTTTGCTCCCACAACATACTTTCTCCCTTGCGTCATGTGGCTTGTCATGTACAAACCAAAGAAATTTGGCCTTTCTTGGTGGGCTAATTGGCTCTGCATCATAGTTGGAGTGTTATTGATGGTTTTATCTCCAATCGGCGCATTGAAGAACATCATACTTCAAGCCAAGGATTTCAAATTCTACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

433

Amino Acids

48.28

Weight (kDa)

9.16

Isoelectric Point (pI)

35.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005950)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g07660
malus_domestica	MD06G1148600.v1.1 MD14G1162700.v1.1
prunus_persica	Prupe.5G155600_v2.0.a1 Prupe.5G155600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0380391 RchiOBHm_Chr5g0057301 RchiOBHm_Chr7g0190811
rosa_laevigata	RLG00000004492 RLG00000004494 RLG00000026307
rosa_multiflora	Rmu_sc0001334.1_g000017 Rmu_sc0005371.1_g000002
rosa_roxburghii	Rroxscaffold_3G00264280 Rroxscaffold_4G00279430
rosa_rugosa	Rorug01G0420300 Rorug01G0420400 Rorug01G0420500 Rorug06G0507300
rosa_samantha	Rh1BG399900 Rh1CG414600 Rh7AG113900 Rh7BG116500 Rh7CG119200
rosa_wichuraiana	Rw1G038710 Rw5G035360 Rw7G009940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	261
AccB1I	GGYRCC	2 cut(s)	261, 316
AccB7I	CCANNNNNTGG	2 cut(s)	271, 555
AclWI	GGATC	1 cut(s)	578
AcsI	RAATTY	3 cut(s)	989, 1172, 1286
AdeI	CACNNNGTG	1 cut(s)	688
AfaI	GTAC	4 cut(s)	77, 203, 263, 1160
AfiI	CCNNNNNNNGG	3 cut(s)	271, 555, 1076
AflIII	ACRYGT	1 cut(s)	913
AgsI	TTSAA	9 cut(s)	338, 493, 615, 637, 704, 994, 1255, 1271, 1285
AjnI	CCWGG	2 cut(s)	160, 241
AluBI	AGCT	7 cut(s)	298, 489, 503, 540, 563, 665, 887
AluI	AGCT	7 cut(s)	298, 489, 503, 540, 563, 665, 887
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	1 cut(s)	147
Alw44I	GTGCAC	1 cut(s)	569
AlwI	GGATC	1 cut(s)	578
AlwNI	CAGNNNCTG	1 cut(s)	566
AoxI	GGCC	3 cut(s)	124, 157, 1177
ApaI	GGGCCC	1 cut(s)	161
ApaLI	GTGCAC	1 cut(s)	569
ApeKI	GCWGC	3 cut(s)	277, 518, 521
ApoI	RAATTY	3 cut(s)	989, 1172, 1286
AseI	ATTAAT	1 cut(s)	329
Asp700I	GAANNNNTTC	1 cut(s)	969
Asp718I	GGTACC	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	1250
AspS9I	GGNCC	3 cut(s)	157, 158, 602
AsuHPI	GGTGA	2 cut(s)	470, 1036
AvaII	GGWCC	1 cut(s)	602
BaeGI	GKGCMC	5 cut(s)	161, 321, 410, 573, 684
BanI	GGYRCC	2 cut(s)	261, 316
BanII	GRGCYC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	3 cut(s)	289, 505, 508
BccI	CCATC	6 cut(s)	53, 147, 211, 389, 1006, 1222
BcgI	CGANNNNNNTGC	2 cut(s)	854, 888
BciT130I	CCWGG	2 cut(s)	162, 243
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	2 cut(s)	486, 974
BfmI	CTRYAG	1 cut(s)	621
BglI	GCCNNNNNGGC	1 cut(s)	877
BisI	GCNGC	3 cut(s)	278, 519, 522
BlsI	GCNGC	3 cut(s)	279, 520, 523
Bme1390I	CCNGG	2 cut(s)	162, 243
Bme18I	GGWCC	1 cut(s)	602
BmgT120I	GGNCC	3 cut(s)	157, 158, 602
BmiI	GGNNCC	5 cut(s)	158, 159, 263, 318, 604
BmrFI	CCNGG	2 cut(s)	162, 243
BmrI	ACTGGG	1 cut(s)	829
BmsI	GCATC	2 cut(s)	216, 1215
BmuI	ACTGGG	1 cut(s)	829
BpmI	CTGGAG	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	556
BsaJI	CCNNGG	5 cut(s)	102, 160, 242, 606, 1275
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bsc4I	CCNNNNNNNGG	3 cut(s)	271, 555, 1076
Bse1I	ACTGG	4 cut(s)	41, 74, 824, 947
Bse3DI	GCAATG	2 cut(s)	549, 948
BseBI	CCWGG	2 cut(s)	162, 243
BseDI	CCNNGG	5 cut(s)	102, 160, 242, 606, 1275
BseGI	GGATG	2 cut(s)	158, 849
BseLI	CCNNNNNNNGG	3 cut(s)	271, 555, 1076
BseMI	GCAATG	2 cut(s)	549, 948
BseMII	CTCAG	1 cut(s)	1102
BseNI	ACTGG	4 cut(s)	41, 74, 824, 947
BseSI	GKGCMC	5 cut(s)	161, 321, 410, 573, 684
BseXI	GCAGC	3 cut(s)	289, 505, 508
BseYI	CCCAGC	1 cut(s)	677
BsgI	GTGCAG	1 cut(s)	614
BshFI	GGCC	3 cut(s)	126, 159, 1179
BshNI	GGYRCC	2 cut(s)	261, 316
BsiHKAI	GWGCWC	1 cut(s)	573
BslFI	GGGAC	1 cut(s)	588
BslI	CCNNNNNNNGG	3 cut(s)	271, 555, 1076
BsmAI	GTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	588
BsmI	GAATGC	1 cut(s)	1040
BsnI	GGCC	3 cut(s)	126, 159, 1179
Bsp120I	GGGCCC	1 cut(s)	157
Bsp1286I	GDGCHC	5 cut(s)	161, 321, 410, 573, 684
Bsp1407I	TGTACA	2 cut(s)	201, 1158
Bsp143I	GATC	3 cut(s)	447, 583, 810
Bsp19I	CCATGG	1 cut(s)	102
BspANI	GGCC	3 cut(s)	126, 159, 1179
BspCNI	CTCAG	1 cut(s)	1101
BspHI	TCATGA	2 cut(s)	394, 444
BspLI	GGNNCC	5 cut(s)	158, 159, 263, 318, 604
BspMAI	CTGCAG	1 cut(s)	625
BspPI	GGATC	1 cut(s)	578
BspT107I	GGYRCC	2 cut(s)	261, 316
BsrDI	GCAATG	2 cut(s)	549, 948
BsrGI	TGTACA	2 cut(s)	201, 1158
BsrI	ACTGG	4 cut(s)	41, 74, 824, 947
BssECI	CCNNGG	5 cut(s)	102, 160, 242, 606, 1275
BssMI	GATC	3 cut(s)	447, 583, 810
BssT1I	CCWWGG	3 cut(s)	102, 606, 1275
Bst2UI	CCWGG	2 cut(s)	162, 243
Bst4CI	ACNGT	1 cut(s)	982
Bst6I	CTCTTC	1 cut(s)	242
BstAPI	GCANNNNNTGC	1 cut(s)	1037
BstAUI	TGTACA	2 cut(s)	201, 1158
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	1 cut(s)	1088
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	2 cut(s)	158, 849
BstHHI	GCGC	1 cut(s)	1250
BstKTI	GATC	3 cut(s)	450, 586, 813
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	3 cut(s)	447, 583, 810
BstMWI	GCNNNNNNNGC	4 cut(s)	414, 560, 877, 1037
BstNI	CCWGG	2 cut(s)	162, 243
BstNSI	RCATGY	3 cut(s)	284, 917, 961
BstSCI	CCNGG	2 cut(s)	160, 241
BstSFI	CTRYAG	1 cut(s)	621
BstSLI	GKGCMC	5 cut(s)	161, 321, 410, 573, 684
BstV1I	GCAGC	3 cut(s)	289, 505, 508
BsuRI	GGCC	3 cut(s)	126, 159, 1179
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	158, 849
BtsI	GCAGTG	2 cut(s)	96, 618
BtsIMutI	CAGTG	4 cut(s)	96, 618, 954, 987
Cac8I	GCNNGC	1 cut(s)	282
CaiI	CAGNNNCTG	1 cut(s)	566
CciI	TCATGA	2 cut(s)	394, 444
CfoI	GCGC	1 cut(s)	1250
Cfr13I	GGNCC	3 cut(s)	157, 158, 602
CseI	GACGC	1 cut(s)	1129
Csp6I	GTAC	4 cut(s)	76, 202, 262, 1159
CviQI	GTAC	4 cut(s)	76, 202, 262, 1159
DdeI	CTNAG	1 cut(s)	1088
DpnI	GATC	3 cut(s)	449, 585, 812
DpnII	GATC	3 cut(s)	447, 583, 810
DraIII	CACNNNGTG	1 cut(s)	688
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
Eco130I	CCWWGG	3 cut(s)	102, 606, 1275
Eco24I	GRGCYC	1 cut(s)	161
Eco32I	GATATC	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	602
EcoO109I	RGGNCCY	2 cut(s)	157, 158
EcoRII	CCWGG	2 cut(s)	160, 241
EcoRV	GATATC	1 cut(s)	28
EcoT14I	CCWWGG	3 cut(s)	102, 606, 1275
EcoT22I	ATGCAT	1 cut(s)	231
EcoT38I	GRGCYC	1 cut(s)	161
ErhI	CCWWGG	3 cut(s)	102, 606, 1275
FaqI	GGGAC	1 cut(s)	588
Fnu4HI	GCNGC	3 cut(s)	278, 519, 522
FokI	GGATG	2 cut(s)	165, 836
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	3 cut(s)	278, 519, 522
FspBI	CTAG	2 cut(s)	486, 974
GlaI	GCGC	1 cut(s)	1249
GluI	GCNGC	3 cut(s)	278, 519, 522
GsaI	CCCAGC	1 cut(s)	681
GsuI	CTGGAG	1 cut(s)	183
HaeIII	GGCC	3 cut(s)	126, 159, 1179
HgaI	GACGC	1 cut(s)	1129
HhaI	GCGC	1 cut(s)	1250
Hin6I	GCGC	1 cut(s)	1248
HinP1I	GCGC	1 cut(s)	1248
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	4 cut(s)	391, 700, 965, 1059
HphI	GGTGA	2 cut(s)	470, 1036
Hpy166II	GTNNAC	3 cut(s)	204, 463, 571
Hpy188I	TCNGA	1 cut(s)	1058
Hpy188III	TCNNGA	6 cut(s)	14, 385, 395, 445, 587, 1296
Hpy8I	GTNNAC	3 cut(s)	204, 463, 571
Hpy99I	CGWCG	1 cut(s)	842
HpyAV	CCTTC	3 cut(s)	726, 744, 748
HpyCH4III	ACNGT	1 cut(s)	982
HpyCH4IV	ACGT	2 cut(s)	687, 837
HpyF10VI	GCNNNNNNNGC	4 cut(s)	414, 560, 877, 1037
HpyF3I	CTNAG	1 cut(s)	1088
HpySE526I	ACGT	2 cut(s)	687, 837
HspAI	GCGC	1 cut(s)	1248
KpnI	GGTACC	1 cut(s)	265
Kzo9I	GATC	3 cut(s)	447, 583, 810
LmnI	GCTCC	1 cut(s)	1120
Lsp1109I	GCAGC	3 cut(s)	289, 505, 508
LweI	GCATC	2 cut(s)	216, 1215
MaeI	CTAG	2 cut(s)	486, 974
MaeII	ACGT	2 cut(s)	687, 837
MaeIII	GTNAC	4 cut(s)	94, 815, 976, 1005
MalI	GATC	3 cut(s)	449, 585, 812
MboI	GATC	3 cut(s)	447, 583, 810
MboII	GAAGA	4 cut(s)	259, 400, 854, 1267
MhlI	GDGCHC	5 cut(s)	161, 321, 410, 573, 684
MmeI	TCCRAC	1 cut(s)	1195
MnlI	CCTC	7 cut(s)	137, 243, 466, 491, 863, 882, 1094
Mph1103I	ATGCAT	1 cut(s)	231
MroXI	GAANNNNTTC	1 cut(s)	969
MseI	TTAA	1 cut(s)	329
MslI	CAYNNNNRTG	1 cut(s)	101
MspR9I	CCNGG	2 cut(s)	162, 243
Mva1269I	GAATGC	1 cut(s)	1040
MvaI	CCWGG	2 cut(s)	162, 243
MwoI	GCNNNNNNNGC	4 cut(s)	414, 560, 877, 1037
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	3 cut(s)	447, 583, 810
NlaIV	GGNNCC	5 cut(s)	158, 159, 263, 318, 604
NmuCI	GTSAC	2 cut(s)	94, 1005
NsiI	ATGCAT	1 cut(s)	231
NspI	RCATGY	3 cut(s)	284, 917, 961
PaeI	GCATGC	1 cut(s)	284
PagI	TCATGA	2 cut(s)	394, 444
PciI	ACATGT	1 cut(s)	913
PctI	GAATGC	1 cut(s)	1040
PdmI	GAANNNNTTC	1 cut(s)	969
PfeI	GAWTC	4 cut(s)	391, 700, 965, 1059
PflMI	CCANNNNNTGG	2 cut(s)	271, 555
PkrI	GCNGC	3 cut(s)	279, 520, 523
PscI	ACATGT	1 cut(s)	913
PshBI	ATTAAT	1 cut(s)	329
Psp6I	CCWGG	2 cut(s)	160, 241
PspFI	CCCAGC	1 cut(s)	677
PspGI	CCWGG	2 cut(s)	160, 241
PspN4I	GGNNCC	5 cut(s)	158, 159, 263, 318, 604
PspOMI	GGGCCC	1 cut(s)	157
PspPI	GGNCC	3 cut(s)	157, 158, 602
PstI	CTGCAG	1 cut(s)	625
PstNI	CAGNNNCTG	1 cut(s)	566
RsaI	GTAC	4 cut(s)	77, 203, 263, 1160
RsaNI	GTAC	4 cut(s)	76, 202, 262, 1159
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	3 cut(s)	278, 519, 522
Sau3AI	GATC	3 cut(s)	447, 583, 810
Sau96I	GGNCC	3 cut(s)	157, 158, 602
ScrFI	CCNGG	2 cut(s)	162, 243
SduI	GDGCHC	5 cut(s)	161, 321, 410, 573, 684
SfaNI	GCATC	2 cut(s)	216, 1215
SfcI	CTRYAG	1 cut(s)	621
SinI	GGWCC	1 cut(s)	602
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	535
SmoI	CTYRAG	1 cut(s)	535
SphI	GCATGC	1 cut(s)	284
SspMI	CTAG	2 cut(s)	486, 974
StyD4I	CCNGG	2 cut(s)	160, 241
StyI	CCWWGG	3 cut(s)	102, 606, 1275
TaaI	ACNGT	1 cut(s)	982
TaiI	ACGT	2 cut(s)	690, 840
TaqI	TCGA	1 cut(s)	840
TatI	WGTACW	2 cut(s)	201, 1158
TfiI	GAWTC	4 cut(s)	391, 700, 965, 1059
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	4 cut(s)	103, 625, 954, 987
TseFI	GTSAC	2 cut(s)	94, 1005
TseI	GCWGC	3 cut(s)	277, 518, 521
Tsp45I	GTSAC	2 cut(s)	94, 1005
TspDTI	ATGAA	6 cut(s)	174, 246, 383, 430, 1001, 1042
TspRI	CASTG	4 cut(s)	103, 625, 954, 987
Van91I	CCANNNNNTGG	2 cut(s)	271, 555
VneI	GTGCAC	1 cut(s)	569
VpaK11BI	GGWCC	1 cut(s)	602
VspI	ATTAAT	1 cut(s)	329
XapI	RAATTY	3 cut(s)	989, 1172, 1286
XceI	RCATGY	3 cut(s)	284, 917, 961
XmnI	GAANNNNTTC	1 cut(s)	969
XspI	CTAG	2 cut(s)	486, 974
Zsp2I	ATGCAT	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.