Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008396

Physical Location & Seq

Genomic Coordinates Forward (+)

4615107 .. 4618195

Gene Structure 3089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g07950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGGCGGTAAAAAGGAATCTTCTTCTTCTCCGAGTTTATGGCTGGCTTCGAATCCAAGCAAGCGATGGGGGGAGCTCTTCTTCCTTTTCTACACTCCTTTCTGGCTCACTCTCTGCCTCGGCATCGTCGTCCCGTTTAAGCTTTACGAGAGCTTTACAGAATGGGAGTACTTGCTGATTGGATTGGTCTCCGCTGTTCCTTCTTTTTTGTTACCCATGTTATTTGTGGGAGAGGCAGATAGAAGCTTGTGTTTGAAGGATCGTTATTGGGTCAAGGCCAGTGTGTGGACAATACTTTTTAGCTATGTTGGGAATTACTTTTGGACCCACTATTTCTTCACGGTTTTGGGAGCTTCCTATACTTTTCCGTCATGGAAAATGAACAATGTACCACATACTACATTCTTTCTCACACATGTTTGCTTTCTATTTTATCATGTTGGATCAAACATGACGCTTCGCAGACTACGCCATGCTATTGCTGACATGCCAAAACAAGTTCAATTGCTTTTGGAGGCTACGTGGATATTGGCTTTTGCTTATTTCATAGCTTACCTGGAGACGGTAGCTATTTCCAACTTCCCTTATTATGAATTTGTTGACCGGGCGGTAATGTACAAAGTTGGGTGCTTGTTTTATGCCATCTACTTCATTGTTAGCTTTCCCATGTTTCTCAGGATTGACGAAAAACCTGGTGATGCATGGGACTTGCCAAGAGCGGCCATTGATGCTCTGGGTGCTGCGATGCTGGTGACCATCATACTAGACCTCTGGCGCATATTCCTGGGACCTATTGTTCCAATTCCAGAAACAAAACAGTGTATTCAACCCGGACTACCGTGGTTCCCCGGGCATGACACAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

33.35

Weight (kDa)

6.99

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50375 AT5G50375 AT5G50375
fragaria_vesca	FvH4_5g07950 FvH4_5g07950
malus_domestica	MD06G1143700.v1.1 MD14G1159000.v1.1
prunus_persica	Prupe.5G152900_v2.0.a1 Prupe.5G152900_v2.0.a1 Prupe.5G152900_v2.0.a1
pyrus_communis	pycom06g13340 pycom14g13260
rosa_chinensis	RchiOBHm_Chr7g0190451
rosa_laevigata	RLG00000004531
rosa_multiflora	Rmu_sc0002614.1_g000002
rosa_roxburghii	Rroxscaffold_3G00264610
rosa_rugosa	Rorug06G0504700
rosa_samantha	Rh7AG110700 Rh7BG113300 Rh7CG115500 Rh7DG113800
rosa_wichuraiana	Rw0G019870 Rw7G009610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	285
AccBSI	CCGCTC	1 cut(s)	719
AciI	CCGC	4 cut(s)	6, 192, 608, 719
AclWI	GGATC	2 cut(s)	267, 451
AcoI	YGGCCR	1 cut(s)	720
AcsI	RAATTY	1 cut(s)	593
AfaI	GTAC	3 cut(s)	170, 390, 617
AfiI	CCNNNNNNNGG	2 cut(s)	285, 562
AflIII	ACRYGT	1 cut(s)	415
AgsI	TTSAA	3 cut(s)	256, 503, 827
AjnI	CCWGG	3 cut(s)	555, 691, 783
AloI	GAACNNNNNNTCC	2 cut(s)	780, 812
AluBI	AGCT	9 cut(s)	76, 142, 153, 246, 303, 353, 551, 569, 660
AluI	AGCT	9 cut(s)	76, 142, 153, 246, 303, 353, 551, 569, 660
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	2 cut(s)	193, 554
AlwI	GGATC	2 cut(s)	267, 451
Ama87I	CYCGRG	1 cut(s)	848
AoxI	GGCC	2 cut(s)	276, 720
ApeKI	GCWGC	1 cut(s)	740
ApoI	RAATTY	1 cut(s)	593
AspLEI	GCGC	1 cut(s)	777
AspS9I	GGNCC	2 cut(s)	324, 788
AsuC2I	CCSGG	4 cut(s)	605, 831, 849, 850
AsuHPI	GGTGA	2 cut(s)	707, 763
AsuII	TTCGAA	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	848
AvaII	GGWCC	2 cut(s)	324, 788
BanII	GRGCYC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	727
BccI	CCATC	3 cut(s)	60, 650, 764
BciT130I	CCWGG	3 cut(s)	557, 693, 785
BcnI	CCSGG	4 cut(s)	605, 831, 849, 850
BcoDI	GTCTC	2 cut(s)	193, 554
BfaI	CTAG	1 cut(s)	764
BisI	GCNGC	2 cut(s)	720, 741
BlsI	GCNGC	2 cut(s)	721, 742
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	7 cut(s)	557, 605, 693, 785, 831, 849, 850
Bme18I	GGWCC	2 cut(s)	324, 788
BmeT110I	CYCGRG	1 cut(s)	848
BmgT120I	GGNCC	2 cut(s)	324, 788
BmiI	GGNNCC	3 cut(s)	326, 789, 845
BmrFI	CCNGG	7 cut(s)	557, 605, 693, 785, 831, 849, 850
BmsI	GCATC	4 cut(s)	132, 688, 718, 735
BpmI	CTGGAG	1 cut(s)	578
Bpu14I	TTCGAA	1 cut(s)	50
BpuMI	CCSGG	4 cut(s)	605, 831, 849, 850
BsaAI	YACGTR	1 cut(s)	522
BsaI	GGTCTC	1 cut(s)	193
BsaJI	CCNNGG	5 cut(s)	118, 784, 839, 847, 848
BsaXI	ACNNNNNCTCC	2 cut(s)	506, 536
Bsc4I	CCNNNNNNNGG	2 cut(s)	285, 562
Bse1I	ACTGG	1 cut(s)	279
BseBI	CCWGG	3 cut(s)	557, 693, 785
BseDI	CCNNGG	5 cut(s)	118, 784, 839, 847, 848
BseLI	CCNNNNNNNGG	2 cut(s)	285, 562
BseMII	CTCAG	1 cut(s)	688
BseNI	ACTGG	1 cut(s)	279
BseXI	GCAGC	1 cut(s)	727
BshFI	GGCC	2 cut(s)	278, 722
BsiHKAI	GWGCWC	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	848
BsiSI	CCGG	3 cut(s)	604, 831, 849
BslFI	GGGAC	3 cut(s)	116, 719, 801
BslI	CCNNNNNNNGG	2 cut(s)	285, 562
BsmAI	GTCTC	2 cut(s)	193, 554
BsmBI	CGTCTC	1 cut(s)	554
BsmFI	GGGAC	3 cut(s)	116, 719, 801
BsnI	GGCC	2 cut(s)	278, 722
Bso31I	GGTCTC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	848
Bsp119I	TTCGAA	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp1407I	TGTACA	1 cut(s)	615
Bsp143I	GATC	2 cut(s)	259, 443
BspACI	CCGC	4 cut(s)	6, 192, 608, 719
BspANI	GGCC	2 cut(s)	278, 722
BspCNI	CTCAG	1 cut(s)	687
BspLI	GGNNCC	3 cut(s)	326, 789, 845
BspPI	GGATC	2 cut(s)	267, 451
BspQI	GCTCTTC	1 cut(s)	83
BspT104I	TTCGAA	1 cut(s)	50
BspTNI	GGTCTC	1 cut(s)	193
BsrBI	CCGCTC	1 cut(s)	719
BsrGI	TGTACA	1 cut(s)	615
BsrI	ACTGG	1 cut(s)	279
BssECI	CCNNGG	5 cut(s)	118, 784, 839, 847, 848
BssMI	GATC	2 cut(s)	259, 443
Bst2UI	CCWGG	3 cut(s)	557, 693, 785
Bst4CI	ACNGT	4 cut(s)	343, 565, 819, 840
Bst6I	CTCTTC	1 cut(s)	83
BstAUI	TGTACA	1 cut(s)	615
BstBAI	YACGTR	1 cut(s)	522
BstBI	TTCGAA	1 cut(s)	50
BstC8I	GCNNGC	2 cut(s)	45, 62
BstDEI	CTNAG	1 cut(s)	674
BstDSI	CCRYGG	1 cut(s)	839
BstEII	GGTNACC	1 cut(s)	751
BstHHI	GCGC	1 cut(s)	777
BstKTI	GATC	2 cut(s)	262, 446
BstMAI	GTCTC	2 cut(s)	193, 554
BstMBI	GATC	2 cut(s)	259, 443
BstMWI	GCNNNNNNNGC	3 cut(s)	468, 728, 737
BstNI	CCWGG	3 cut(s)	557, 693, 785
BstNSI	RCATGY	2 cut(s)	419, 490
BstPI	GGTNACC	1 cut(s)	751
BstSCI	CCNGG	7 cut(s)	555, 603, 691, 783, 829, 847, 848
BstV1I	GCAGC	1 cut(s)	727
BsuRI	GGCC	2 cut(s)	278, 722
BtgI	CCRYGG	1 cut(s)	839
BtgZI	GCGATG	2 cut(s)	79, 758
BtsIMutI	CAGTG	2 cut(s)	286, 824
Cac8I	GCNNGC	2 cut(s)	45, 62
CfoI	GCGC	1 cut(s)	777
Cfr13I	GGNCC	2 cut(s)	324, 788
Cfr9I	CCCGGG	1 cut(s)	848
CseI	GACGC	1 cut(s)	463
CsiI	ACCWGGT	1 cut(s)	691
Csp6I	GTAC	3 cut(s)	169, 389, 616
CviQI	GTAC	3 cut(s)	169, 389, 616
DdeI	CTNAG	1 cut(s)	674
DpnI	GATC	2 cut(s)	261, 445
DpnII	GATC	2 cut(s)	259, 443
EaeI	YGGCCR	1 cut(s)	720
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Ecl136II	GAGCTC	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	324, 788
Eco53kI	GAGCTC	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	848
Eco91I	GGTNACC	1 cut(s)	751
EcoICRI	GAGCTC	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	788
EcoO65I	GGTNACC	1 cut(s)	751
EcoRII	CCWGG	3 cut(s)	555, 691, 783
EcoT22I	ATGCAT	1 cut(s)	703
EcoT38I	GRGCYC	1 cut(s)	78
Esp3I	CGTCTC	1 cut(s)	554
FaqI	GGGAC	3 cut(s)	116, 719, 801
Fnu4HI	GCNGC	2 cut(s)	720, 741
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	2 cut(s)	720, 741
FspBI	CTAG	1 cut(s)	764
GlaI	GCGC	1 cut(s)	776
GluI	GCNGC	2 cut(s)	720, 741
GsuI	CTGGAG	1 cut(s)	578
HaeIII	GGCC	2 cut(s)	278, 722
HapII	CCGG	3 cut(s)	604, 831, 849
HgaI	GACGC	1 cut(s)	463
HhaI	GCGC	1 cut(s)	777
Hin6I	GCGC	1 cut(s)	775
HinP1I	GCGC	1 cut(s)	775
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HindIII	AAGCTT	2 cut(s)	140, 244
HinfI	GANTC	2 cut(s)	17, 52
HpaII	CCGG	3 cut(s)	604, 831, 849
HphI	GGTGA	2 cut(s)	707, 763
Hpy166II	GTNNAC	2 cut(s)	288, 601
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	2 cut(s)	676, 806
Hpy8I	GTNNAC	2 cut(s)	288, 601
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	2 cut(s)	210, 250
HpyCH4III	ACNGT	4 cut(s)	343, 565, 819, 840
HpyCH4IV	ACGT	1 cut(s)	521
HpyCH4V	TGCA	1 cut(s)	701
HpyF10VI	GCNNNNNNNGC	3 cut(s)	468, 728, 737
HpyF3I	CTNAG	1 cut(s)	674
HpySE526I	ACGT	1 cut(s)	521
HspAI	GCGC	1 cut(s)	775
Kzo9I	GATC	2 cut(s)	259, 443
LguI	GCTCTTC	1 cut(s)	83
LmnI	GCTCC	2 cut(s)	73, 350
Lsp1109I	GCAGC	1 cut(s)	727
LweI	GCATC	4 cut(s)	132, 688, 718, 735
MabI	ACCWGGT	1 cut(s)	691
MaeI	CTAG	1 cut(s)	764
MaeII	ACGT	1 cut(s)	521
MaeIII	GTNAC	2 cut(s)	210, 751
MalI	GATC	2 cut(s)	261, 445
MbiI	CCGCTC	1 cut(s)	719
MboI	GATC	2 cut(s)	259, 443
MboII	GAAGA	6 cut(s)	12, 15, 18, 70, 73, 328
MfeI	CAATTG	1 cut(s)	503
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	4 cut(s)	313, 503, 593, 801
MmeI	TCCRAC	2 cut(s)	421, 600
MnlI	CCTC	4 cut(s)	128, 226, 508, 779
Mph1103I	ATGCAT	1 cut(s)	703
MseI	TTAA	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	3 cut(s)	604, 831, 849
MspR9I	CCNGG	7 cut(s)	557, 605, 693, 785, 831, 849, 850
MunI	CAATTG	1 cut(s)	503
MvaI	CCWGG	3 cut(s)	557, 693, 785
MwoI	GCNNNNNNNGC	3 cut(s)	468, 728, 737
NciI	CCSGG	4 cut(s)	605, 831, 849, 850
NdeII	GATC	2 cut(s)	259, 443
NlaIV	GGNNCC	3 cut(s)	326, 789, 845
NmeAIII	GCCGAG	1 cut(s)	99
NmuCI	GTSAC	1 cut(s)	751
NsiI	ATGCAT	1 cut(s)	703
NspI	RCATGY	2 cut(s)	419, 490
NspV	TTCGAA	1 cut(s)	50
PciI	ACATGT	1 cut(s)	415
PciSI	GCTCTTC	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	17, 52
PflMI	CCANNNNNTGG	1 cut(s)	285
PkrI	GCNGC	2 cut(s)	721, 742
Ppu21I	YACGTR	1 cut(s)	522
PpuMI	RGGWCCY	1 cut(s)	788
PscI	ACATGT	1 cut(s)	415
Psp124BI	GAGCTC	1 cut(s)	78
Psp5II	RGGWCCY	1 cut(s)	788
Psp6I	CCWGG	3 cut(s)	555, 691, 783
PspEI	GGTNACC	1 cut(s)	751
PspGI	CCWGG	3 cut(s)	555, 691, 783
PspN4I	GGNNCC	3 cut(s)	326, 789, 845
PspPI	GGNCC	2 cut(s)	324, 788
PspPPI	RGGWCCY	1 cut(s)	788
RsaI	GTAC	3 cut(s)	170, 390, 617
RsaNI	GTAC	3 cut(s)	169, 389, 616
SacI	GAGCTC	1 cut(s)	78
SapI	GCTCTTC	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	2 cut(s)	720, 741
Sau3AI	GATC	2 cut(s)	259, 443
Sau96I	GGNCC	2 cut(s)	324, 788
ScaI	AGTACT	1 cut(s)	170
ScrFI	CCNGG	7 cut(s)	557, 605, 693, 785, 831, 849, 850
SduI	GDGCHC	1 cut(s)	78
SexAI	ACCWGGT	1 cut(s)	691
SfaNI	GCATC	4 cut(s)	132, 688, 718, 735
SfuI	TTCGAA	1 cut(s)	50
SinI	GGWCC	2 cut(s)	324, 788
SmaI	CCCGGG	1 cut(s)	850
Sse9I	AATT	4 cut(s)	313, 503, 593, 801
SsiI	CCGC	4 cut(s)	6, 192, 608, 719
SspMI	CTAG	1 cut(s)	764
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	7 cut(s)	555, 603, 691, 783, 829, 847, 848
TaaI	ACNGT	4 cut(s)	343, 565, 819, 840
TaiI	ACGT	1 cut(s)	524
TaqI	TCGA	1 cut(s)	50
TasI	AATT	4 cut(s)	313, 503, 593, 801
TatI	WGTACW	2 cut(s)	168, 615
TauI	GCSGC	1 cut(s)	722
TfiI	GAWTC	2 cut(s)	17, 52
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	2 cut(s)	286, 824
TseFI	GTSAC	1 cut(s)	751
TseI	GCWGC	1 cut(s)	740
Tsp45I	GTSAC	1 cut(s)	751
TspDTI	ATGAA	4 cut(s)	395, 535, 606, 640
TspGWI	ACGGA	1 cut(s)	357
TspMI	CCCGGG	1 cut(s)	848
TspRI	CASTG	2 cut(s)	286, 824
Van91I	CCANNNNNTGG	1 cut(s)	285
VpaK11BI	GGWCC	2 cut(s)	324, 788
XapI	RAATTY	1 cut(s)	593
XceI	RCATGY	2 cut(s)	419, 490
XcmI	CCANNNNNNNNNTGG	3 cut(s)	63, 223, 730
XmaI	CCCGGG	1 cut(s)	848
XspI	CTAG	1 cut(s)	764
ZrmI	AGTACT	1 cut(s)	170
Zsp2I	ATGCAT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.