Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008396

Physical Location & Seq

Genomic Coordinates Reverse (-)

8498563 .. 8501001

Gene Structure 2439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG113300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGGTGGTAAAAAGGAATCTTCTTCTTCTTCTTCTCCGAGTTTATGGCTGGCTTCCAATCCAAGCAAGCGATGGGGGGAGCTCTTCTTTCTCTTCTACACTCCTTTCTGGCTCACTCTCTGCCTCGGAATCGTCGTCCCCTACAAGCTCTACGAGAGGTTTACGGAATGGGAGTATTTGCTAATTGGATTGGTCTCGGCTGTTCCTTCGTTTTTGTTACCCATGTTATTCGTTGGAAAGGCAGATAGAAGCTTGTGTTGGAAGGATCGGTATTGGGTCAAGGCCAGTGTGTGGACAATACTTTTTAGCTATGTTGGGAATTACTTTTGGACCCACTATTTCTTCACGGTTTTGGGAGCTTCGTATACTTTCCCGTCATGGAAAATGAACAATGTACCACATACTACCTTCCTTCTCACACATGTTTGCTTCCTATTTTATCATGTCGGATCAAACATGACGCTTCGCAGACTACGCCATTCTATTGCTGACATGCCAAAACAAGTTCAATTGCTTTTTGAGGCTGCATGGATATTGGCTTTTGCTTATTTCATAGCATACCTGGAGACTGTAGCTATTTCCAACGTATGTGATAACATTCTTCAACACTTTTTATCACTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

24.26

Weight (kDa)

9.02

Isoelectric Point (pI)

50.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50375 AT5G50375 AT5G50375
fragaria_vesca	FvH4_5g07950 FvH4_5g07950
malus_domestica	MD06G1143700.v1.1 MD14G1159000.v1.1
prunus_persica	Prupe.5G152900_v2.0.a1 Prupe.5G152900_v2.0.a1 Prupe.5G152900_v2.0.a1
pyrus_communis	pycom06g13340 pycom14g13260
rosa_chinensis	RchiOBHm_Chr7g0190451
rosa_laevigata	RLG00000004531
rosa_multiflora	Rmu_sc0002614.1_g000002
rosa_roxburghii	Rroxscaffold_3G00264610
rosa_rugosa	Rorug06G0504700
rosa_samantha	Rh7AG110700 Rh7BG113300 Rh7CG115500 Rh7DG113800
rosa_wichuraiana	Rw0G019870 Rw7G009610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	291
AccI	GTMKAC	1 cut(s)	365
AclWI	GGATC	2 cut(s)	273, 457
AfaI	GTAC	1 cut(s)	396
AfiI	CCNNNNNNNGG	1 cut(s)	291
AflIII	ACRYGT	1 cut(s)	421
AgsI	TTSAA	2 cut(s)	509, 605
AjnI	CCWGG	1 cut(s)	561
AjuI	GAANNNNNNNTTGG	2 cut(s)	241, 273
AluBI	AGCT	6 cut(s)	82, 148, 252, 309, 359, 575
AluI	AGCT	6 cut(s)	82, 148, 252, 309, 359, 575
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	2 cut(s)	199, 560
AlwI	GGATC	2 cut(s)	273, 457
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	1 cut(s)	524
AspS9I	GGNCC	1 cut(s)	330
AvaII	GGWCC	1 cut(s)	330
BanII	GRGCYC	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	511
BccI	CCATC	1 cut(s)	66
BciT130I	CCWGG	1 cut(s)	563
BcoDI	GTCTC	2 cut(s)	199, 560
BfmI	CTRYAG	1 cut(s)	570
BisI	GCNGC	1 cut(s)	525
BlsI	GCNGC	1 cut(s)	526
Bme1390I	CCNGG	1 cut(s)	563
Bme18I	GGWCC	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	330
BmiI	GGNNCC	1 cut(s)	332
BmrFI	CCNGG	1 cut(s)	563
BpmI	CTGGAG	1 cut(s)	584
BsaI	GGTCTC	1 cut(s)	199
BsaJI	CCNNGG	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
Bse1I	ACTGG	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	563
BseDI	CCNNGG	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseNI	ACTGG	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	511
BshFI	GGCC	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	291
BsmAI	GTCTC	2 cut(s)	199, 560
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	284
Bso31I	GGTCTC	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	265, 449
BspANI	GGCC	1 cut(s)	284
BspLI	GGNNCC	1 cut(s)	332
BspPI	GGATC	2 cut(s)	273, 457
BspQI	GCTCTTC	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	265, 449
BssNAI	GTATAC	1 cut(s)	366
Bst1107I	GTATAC	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	563
Bst4CI	ACNGT	2 cut(s)	349, 571
Bst6I	CTCTTC	2 cut(s)	89, 98
BstC8I	GCNNGC	2 cut(s)	51, 68
BstKTI	GATC	2 cut(s)	268, 452
BstMAI	GTCTC	2 cut(s)	199, 560
BstMBI	GATC	2 cut(s)	265, 449
BstMWI	GCNNNNNNNGC	1 cut(s)	474
BstNI	CCWGG	1 cut(s)	563
BstNSI	RCATGY	2 cut(s)	425, 496
BstSCI	CCNGG	1 cut(s)	561
BstSFI	CTRYAG	1 cut(s)	570
BstV1I	GCAGC	1 cut(s)	511
BstZ17I	GTATAC	1 cut(s)	366
BsuRI	GGCC	1 cut(s)	284
BtgZI	GCGATG	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	2 cut(s)	51, 68
Cfr13I	GGNCC	1 cut(s)	330
CseI	GACGC	1 cut(s)	469
Csp6I	GTAC	1 cut(s)	395
CviAII	CATG	7 cut(s)	223, 378, 422, 443, 457, 493, 528
CviQI	GTAC	1 cut(s)	395
DpnI	GATC	2 cut(s)	267, 451
DpnII	GATC	2 cut(s)	265, 449
Eam1104I	CTCTTC	2 cut(s)	89, 98
EarI	CTCTTC	2 cut(s)	89, 98
Ecl136II	GAGCTC	1 cut(s)	82
Eco24I	GRGCYC	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	330
Eco53kI	GAGCTC	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	561
EcoT38I	GRGCYC	1 cut(s)	84
FaeI	CATG	7 cut(s)	226, 381, 425, 446, 460, 496, 531
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	7 cut(s)	222, 377, 421, 442, 456, 492, 527
FblI	GTMKAC	1 cut(s)	365
Fnu4HI	GCNGC	1 cut(s)	525
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	1 cut(s)	525
GluI	GCNGC	1 cut(s)	525
GsuI	CTGGAG	1 cut(s)	584
HaeIII	GGCC	1 cut(s)	284
HgaI	GACGC	1 cut(s)	469
Hin1II	CATG	7 cut(s)	226, 381, 425, 446, 460, 496, 531
HindIII	AAGCTT	1 cut(s)	250
HinfI	GANTC	2 cut(s)	17, 129
Hpy166II	GTNNAC	3 cut(s)	162, 294, 366
Hpy188I	TCNGA	3 cut(s)	39, 128, 449
Hpy8I	GTNNAC	3 cut(s)	162, 294, 366
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	4 cut(s)	216, 256, 418, 422
HpyCH4III	ACNGT	2 cut(s)	349, 571
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	1 cut(s)	527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	474
HpySE526I	ACGT	1 cut(s)	585
Hsp92II	CATG	7 cut(s)	226, 381, 425, 446, 460, 496, 531
Kzo9I	GATC	2 cut(s)	265, 449
LguI	GCTCTTC	1 cut(s)	89
LmnI	GCTCC	2 cut(s)	79, 356
LpnPI	CCDG	5 cut(s)	35, 94, 298, 548, 575
Lsp1109I	GCAGC	1 cut(s)	511
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	2 cut(s)	267, 451
MboI	GATC	2 cut(s)	265, 449
MboII	GAAGA	9 cut(s)	12, 15, 18, 21, 24, 76, 85, 334, 593
MfeI	CAATTG	1 cut(s)	509
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	3 cut(s)	183, 319, 509
MmeI	TCCRAC	4 cut(s)	214, 239, 427, 606
MnlI	CCTC	3 cut(s)	134, 150, 514
MspR9I	CCNGG	1 cut(s)	563
MunI	CAATTG	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	563
MwoI	GCNNNNNNNGC	1 cut(s)	474
NdeII	GATC	2 cut(s)	265, 449
NlaIII	CATG	7 cut(s)	226, 381, 425, 446, 460, 496, 531
NlaIV	GGNNCC	1 cut(s)	332
NmeAIII	GCCGAG	1 cut(s)	176
NspI	RCATGY	2 cut(s)	425, 496
PciI	ACATGT	1 cut(s)	421
PciSI	GCTCTTC	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	17, 129
PflMI	CCANNNNNTGG	1 cut(s)	291
PkrI	GCNGC	1 cut(s)	526
PscI	ACATGT	1 cut(s)	421
Psp124BI	GAGCTC	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	561
PspGI	CCWGG	1 cut(s)	561
PspN4I	GGNNCC	1 cut(s)	332
PspPI	GGNCC	1 cut(s)	330
RsaI	GTAC	1 cut(s)	396
RsaNI	GTAC	1 cut(s)	395
SacI	GAGCTC	1 cut(s)	84
SapI	GCTCTTC	1 cut(s)	89
SatI	GCNGC	1 cut(s)	525
Sau3AI	GATC	2 cut(s)	265, 449
Sau96I	GGNCC	1 cut(s)	330
ScrFI	CCNGG	1 cut(s)	563
SduI	GDGCHC	1 cut(s)	84
SfcI	CTRYAG	1 cut(s)	570
SinI	GGWCC	1 cut(s)	330
Sse9I	AATT	3 cut(s)	183, 319, 509
SstI	GAGCTC	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	561
TaaI	ACNGT	2 cut(s)	349, 571
TaiI	ACGT	1 cut(s)	588
TasI	AATT	3 cut(s)	183, 319, 509
TfiI	GAWTC	2 cut(s)	17, 129
TscAI	CASTG	1 cut(s)	292
TseI	GCWGC	1 cut(s)	524
TspDTI	ATGAA	2 cut(s)	401, 541
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	1 cut(s)	292
Van91I	CCANNNNNTGG	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	330
XceI	RCATGY	2 cut(s)	425, 496
XcmI	CCANNNNNNNNNTGG	1 cut(s)	69
XmiI	GTMKAC	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.