Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008396

Physical Location & Seq

Genomic Coordinates Reverse (-)

8704563 .. 8707761

Gene Structure 3199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG110700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGGTGGTAAAAAGGAATCTTCTTCTTCTTCTTCTTCTCCTTCTCCGAGTTTATGGCTGGCTTCCAATCCAAGCAAGCGATGGGGGGAGCTCTTCTTTCTCTTCTACACTCCTTTCTGGCTCACTCTCTGCCTCGGAATCGTCGTCCCCTACAAGCTCTACGAGAGGTTTACGGAATGGGAGTATTTGCTAATTGGATTGGTCTCGGCTGTTCCTTCGTTTTTGTTACCCATGTTGTTCGTTGGAAAGGCAGATAGAAGCTTGTGTTGGAAGGATCGGTATTGGGTCAAGGCCAGTGTGTGGACAATACTTTTTAGCTATGTTGGGAATTACTTTTGGACCCACTATTTCTTCACGGTTTTGGGAGCTTCGTATACTTTCCCGTCATGGAAAATGAACAATGTACCACATACTACCTTCCTTCTTACACATGTTTGCTTCCTATTTTATCATGTCGGATCAAACATGACGCTTCGCAGACTACGCCATTCTATTGCTGACATGCCAAAACAAGTTCAATTGCTTTTTGAGGCTGCATGGATATTGGCTTTTGCTTATTTCATAGCATACCTGGAGACTGTAGCTATTTCCAACGTATGTGATAACATTCATCAACACTTTTTATCACTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

24.56

Weight (kDa)

9.02

Isoelectric Point (pI)

52.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50375 AT5G50375 AT5G50375
fragaria_vesca	FvH4_5g07950 FvH4_5g07950
malus_domestica	MD06G1143700.v1.1 MD14G1159000.v1.1
prunus_persica	Prupe.5G152900_v2.0.a1 Prupe.5G152900_v2.0.a1 Prupe.5G152900_v2.0.a1
pyrus_communis	pycom06g13340 pycom14g13260
rosa_chinensis	RchiOBHm_Chr7g0190451
rosa_laevigata	RLG00000004531
rosa_multiflora	Rmu_sc0002614.1_g000002
rosa_roxburghii	Rroxscaffold_3G00264610
rosa_rugosa	Rorug06G0504700
rosa_samantha	Rh7AG110700 Rh7BG113300 Rh7CG115500 Rh7DG113800
rosa_wichuraiana	Rw0G019870 Rw7G009610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	300
AccI	GTMKAC	1 cut(s)	374
AclWI	GGATC	2 cut(s)	282, 466
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	1 cut(s)	300
AflIII	ACRYGT	1 cut(s)	430
AgsI	TTSAA	1 cut(s)	518
AjnI	CCWGG	1 cut(s)	570
AjuI	GAANNNNNNNTTGG	2 cut(s)	250, 282
AluBI	AGCT	6 cut(s)	91, 157, 261, 318, 368, 584
AluI	AGCT	6 cut(s)	91, 157, 261, 318, 368, 584
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	2 cut(s)	208, 569
AlwI	GGATC	2 cut(s)	282, 466
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	533
AspS9I	GGNCC	1 cut(s)	339
AvaII	GGWCC	1 cut(s)	339
BanII	GRGCYC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	520
BccI	CCATC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	572
BcoDI	GTCTC	2 cut(s)	208, 569
BfmI	CTRYAG	1 cut(s)	579
BisI	GCNGC	1 cut(s)	534
BlsI	GCNGC	1 cut(s)	535
Bme1390I	CCNGG	1 cut(s)	572
Bme18I	GGWCC	1 cut(s)	339
BmgT120I	GGNCC	1 cut(s)	339
BmiI	GGNNCC	1 cut(s)	341
BmrFI	CCNGG	1 cut(s)	572
BpmI	CTGGAG	1 cut(s)	593
BsaI	GGTCTC	1 cut(s)	208
BsaJI	CCNNGG	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
Bse1I	ACTGG	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	572
BseDI	CCNNGG	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	520
BshFI	GGCC	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	300
BsmAI	GTCTC	2 cut(s)	208, 569
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	293
Bso31I	GGTCTC	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	2 cut(s)	274, 458
BspANI	GGCC	1 cut(s)	293
BspLI	GGNNCC	1 cut(s)	341
BspPI	GGATC	2 cut(s)	282, 466
BspQI	GCTCTTC	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	294
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	2 cut(s)	274, 458
BssNAI	GTATAC	1 cut(s)	375
Bst1107I	GTATAC	1 cut(s)	375
Bst2UI	CCWGG	1 cut(s)	572
Bst4CI	ACNGT	2 cut(s)	358, 580
Bst6I	CTCTTC	2 cut(s)	98, 107
BstC8I	GCNNGC	2 cut(s)	60, 77
BstKTI	GATC	2 cut(s)	277, 461
BstMAI	GTCTC	2 cut(s)	208, 569
BstMBI	GATC	2 cut(s)	274, 458
BstMWI	GCNNNNNNNGC	1 cut(s)	483
BstNI	CCWGG	1 cut(s)	572
BstNSI	RCATGY	2 cut(s)	434, 505
BstSCI	CCNGG	1 cut(s)	570
BstSFI	CTRYAG	1 cut(s)	579
BstV1I	GCAGC	1 cut(s)	520
BstZ17I	GTATAC	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	293
BtgZI	GCGATG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	301
Cac8I	GCNNGC	2 cut(s)	60, 77
Cfr13I	GGNCC	1 cut(s)	339
CseI	GACGC	1 cut(s)	478
Csp6I	GTAC	1 cut(s)	404
CviAII	CATG	7 cut(s)	232, 387, 431, 452, 466, 502, 537
CviQI	GTAC	1 cut(s)	404
DpnI	GATC	2 cut(s)	276, 460
DpnII	GATC	2 cut(s)	274, 458
Eam1104I	CTCTTC	2 cut(s)	98, 107
EarI	CTCTTC	2 cut(s)	98, 107
Ecl136II	GAGCTC	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	339
Eco53kI	GAGCTC	1 cut(s)	91
EcoICRI	GAGCTC	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	570
EcoT38I	GRGCYC	1 cut(s)	93
FaeI	CATG	7 cut(s)	235, 390, 434, 455, 469, 505, 540
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	7 cut(s)	231, 386, 430, 451, 465, 501, 536
FblI	GTMKAC	1 cut(s)	374
Fnu4HI	GCNGC	1 cut(s)	534
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	534
GluI	GCNGC	1 cut(s)	534
GsuI	CTGGAG	1 cut(s)	593
HaeIII	GGCC	1 cut(s)	293
HgaI	GACGC	1 cut(s)	478
Hin1II	CATG	7 cut(s)	235, 390, 434, 455, 469, 505, 540
HindIII	AAGCTT	1 cut(s)	259
HinfI	GANTC	2 cut(s)	17, 138
Hpy166II	GTNNAC	3 cut(s)	171, 303, 375
Hpy188I	TCNGA	3 cut(s)	48, 137, 458
Hpy8I	GTNNAC	3 cut(s)	171, 303, 375
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	5 cut(s)	51, 225, 265, 427, 431
HpyCH4III	ACNGT	2 cut(s)	358, 580
HpyCH4IV	ACGT	1 cut(s)	594
HpyCH4V	TGCA	1 cut(s)	536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	483
HpySE526I	ACGT	1 cut(s)	594
Hsp92II	CATG	7 cut(s)	235, 390, 434, 455, 469, 505, 540
Kzo9I	GATC	2 cut(s)	274, 458
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	2 cut(s)	88, 365
LpnPI	CCDG	5 cut(s)	44, 103, 307, 557, 584
Lsp1109I	GCAGC	1 cut(s)	520
MaeII	ACGT	1 cut(s)	594
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	2 cut(s)	276, 460
MboI	GATC	2 cut(s)	274, 458
MboII	GAAGA	9 cut(s)	12, 15, 18, 21, 24, 27, 85, 94, 343
MfeI	CAATTG	1 cut(s)	518
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	3 cut(s)	192, 328, 518
MmeI	TCCRAC	4 cut(s)	223, 248, 436, 615
MnlI	CCTC	3 cut(s)	143, 159, 523
MspR9I	CCNGG	1 cut(s)	572
MunI	CAATTG	1 cut(s)	518
MvaI	CCWGG	1 cut(s)	572
MwoI	GCNNNNNNNGC	1 cut(s)	483
NdeII	GATC	2 cut(s)	274, 458
NlaIII	CATG	7 cut(s)	235, 390, 434, 455, 469, 505, 540
NlaIV	GGNNCC	1 cut(s)	341
NmeAIII	GCCGAG	1 cut(s)	185
NspI	RCATGY	2 cut(s)	434, 505
PciI	ACATGT	1 cut(s)	430
PciSI	GCTCTTC	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	17, 138
PflMI	CCANNNNNTGG	1 cut(s)	300
PkrI	GCNGC	1 cut(s)	535
PscI	ACATGT	1 cut(s)	430
Psp124BI	GAGCTC	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	570
PspN4I	GGNNCC	1 cut(s)	341
PspPI	GGNCC	1 cut(s)	339
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
SacI	GAGCTC	1 cut(s)	93
SapI	GCTCTTC	1 cut(s)	98
SatI	GCNGC	1 cut(s)	534
Sau3AI	GATC	2 cut(s)	274, 458
Sau96I	GGNCC	1 cut(s)	339
ScrFI	CCNGG	1 cut(s)	572
SduI	GDGCHC	1 cut(s)	93
SfcI	CTRYAG	1 cut(s)	579
SinI	GGWCC	1 cut(s)	339
Sse9I	AATT	3 cut(s)	192, 328, 518
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	570
TaaI	ACNGT	2 cut(s)	358, 580
TaiI	ACGT	1 cut(s)	597
TasI	AATT	3 cut(s)	192, 328, 518
TfiI	GAWTC	2 cut(s)	17, 138
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	1 cut(s)	533
TspDTI	ATGAA	3 cut(s)	410, 550, 599
TspGWI	ACGGA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	301
Van91I	CCANNNNNTGG	1 cut(s)	300
VpaK11BI	GGWCC	1 cut(s)	339
XceI	RCATGY	2 cut(s)	434, 505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	78
XmiI	GTMKAC	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.