Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0008396

Physical Location & Seq

Genomic Coordinates Reverse (-)

25316134 .. 25319005

Gene Structure 2872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1159000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGGCGGTAAAGAAGAACCGGATTGTTATTCGAGTTTATGGTTGGCTCCGAATCCAAGCAAGAGATGGGGGGAGCTCTTCTTCCTTCTCTACACTCCTTTCTGGCTCACTCTCTGCTTGGGAATCGTCGTGCCCTTCAAGCTCTACGAGAGCTTTACAGAATTGGAGTATTTGCTAATTGGATTGGTTTCCGCAGTCCCTGCGTTTTTGTTGCCAATGCTCTTCGTTGGGAAGGCGGATAGCAGCTTGGCTTGGAAGGATCGTTATTGGGTCAAGGCCAGCGTGTGGATAATAATTTTTAGCTATGTTGGGAATTACTTTTGGACCCACTATTTCTTCACCGTTTTGGGAGCTTCGTATACTTTCCCATCATGGAAGATGAACAATGTACCCCACACTACCTTCCTTCTCACACATGTTTGCTTCCTATTTTATCATGTCACATCAAATATAACACTTCGCAGACTACGCCATTTTACTGCTGAATGGCCAGAACAAGTTCAATGGGTTGCTGAGGCTGCATGGATTTTGGCTTTTTCTTATTTCATCGCATACCTGGAGACTGTAGCTATTTCTAATTTCCCTTACTATCAATTTGTGGACCGGGCGTCTATGTATACAGTTGGTTCCTTGTTTTATGCGATATACTTCATCGTTAGCTTTCCCATGTTTCTTAGGATCGATGAGAAGCCTGGCGATCCATGGGACTTGCCTAGAGCGGCCATTGATGCTCTGGGCGCCGCAATGCTGGTGACAATCATACTAGATCTGTGGCGCATCTTTCTGGGACCTATTGTCCCAATTCCAGAAACAAAACAGTGTCTTCAACCTGGACTGCCATGGTTCCCGGGACACGCTGCCCAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

No domains found.

Protein Analysis

290

Amino Acids

33.51

Weight (kDa)

6.06

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50375 AT5G50375 AT5G50375
fragaria_vesca	FvH4_5g07950 FvH4_5g07950
malus_domestica	MD06G1143700.v1.1 MD14G1159000.v1.1
prunus_persica	Prupe.5G152900_v2.0.a1 Prupe.5G152900_v2.0.a1 Prupe.5G152900_v2.0.a1
pyrus_communis	pycom06g13340 pycom14g13260
rosa_chinensis	RchiOBHm_Chr7g0190451
rosa_laevigata	RLG00000004531
rosa_multiflora	Rmu_sc0002614.1_g000002
rosa_roxburghii	Rroxscaffold_3G00264610
rosa_rugosa	Rorug06G0504700
rosa_samantha	Rh7AG110700 Rh7BG113300 Rh7CG115500 Rh7DG113800
rosa_wichuraiana	Rw0G019870 Rw7G009610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	737
AccB7I	CCANNNNNTGG	1 cut(s)	285
AccBSI	CCGCTC	1 cut(s)	719
AccI	GTMKAC	2 cut(s)	359, 617
AciI	CCGC	5 cut(s)	6, 192, 236, 719, 741
AclWI	GGATC	3 cut(s)	267, 686, 692
AcoI	YGGCCR	2 cut(s)	488, 720
AcsI	RAATTY	1 cut(s)	864
AcyI	GRCGYC	2 cut(s)	608, 738
AfaI	GTAC	1 cut(s)	390
AfiI	CCNNNNNNNGG	1 cut(s)	285
AflIII	ACRYGT	1 cut(s)	415
AgsI	TTSAA	3 cut(s)	139, 503, 827
AhdI	GACNNNNNGTC	2 cut(s)	607, 794
AjnI	CCWGG	3 cut(s)	555, 691, 829
AluBI	AGCT	8 cut(s)	76, 142, 153, 246, 303, 353, 569, 660
AluI	AGCT	8 cut(s)	76, 142, 153, 246, 303, 353, 569, 660
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	554
AlwI	GGATC	3 cut(s)	267, 686, 692
AlwNI	CAGNNNCTG	1 cut(s)	200
Ama87I	CYCGRG	1 cut(s)	847
AoxI	GGCC	3 cut(s)	276, 488, 720
ApeKI	GCWGC	3 cut(s)	243, 518, 857
ApoI	RAATTY	1 cut(s)	864
Asp700I	GAANNNNTTC	1 cut(s)	498
AspLEI	GCGC	2 cut(s)	740, 777
AspS9I	GGNCC	3 cut(s)	324, 601, 788
AsuC2I	CCSGG	3 cut(s)	605, 848, 849
AsuHPI	GGTGA	2 cut(s)	331, 763
AvaI	CYCGRG	1 cut(s)	847
AvaII	GGWCC	3 cut(s)	324, 601, 788
BaeGI	GKGCMC	1 cut(s)	135
BalI	TGGCCA	1 cut(s)	490
BanI	GGYRCC	1 cut(s)	737
BanII	GRGCYC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	815
Bbv12I	GWGCWC	1 cut(s)	78
BbvCI	CCTCAGC	1 cut(s)	513
BbvI	GCAGC	3 cut(s)	255, 505, 844
BccI	CCATC	2 cut(s)	60, 376
BciT130I	CCWGG	3 cut(s)	557, 693, 831
BcnI	CCSGG	3 cut(s)	605, 848, 849
BcoDI	GTCTC	1 cut(s)	554
BfaI	CTAG	2 cut(s)	714, 764
BfmI	CTRYAG	1 cut(s)	564
BfoI	RGCGCY	1 cut(s)	741
BglII	AGATCT	1 cut(s)	766
BisI	GCNGC	5 cut(s)	244, 519, 720, 741, 858
BlsI	GCNGC	5 cut(s)	245, 520, 721, 742, 859
Bme1390I	CCNGG	6 cut(s)	557, 605, 693, 831, 848, 849
Bme18I	GGWCC	3 cut(s)	324, 601, 788
BmeRI	GACNNNNNGTC	2 cut(s)	607, 794
BmeT110I	CYCGRG	1 cut(s)	847
BmgT120I	GGNCC	3 cut(s)	324, 601, 788
BmiI	GGNNCC	6 cut(s)	48, 326, 628, 739, 789, 845
BmrFI	CCNGG	6 cut(s)	557, 605, 693, 831, 848, 849
BmsI	GCATC	2 cut(s)	718, 786
BpiI	GAAGAC	1 cut(s)	815
BpmI	CTGGAG	1 cut(s)	578
Bpu10I	CCTNAGC	1 cut(s)	513
BpuMI	CCSGG	3 cut(s)	605, 848, 849
Bsa29I	ATCGAT	1 cut(s)	681
BsaHI	GRCGYC	2 cut(s)	608, 738
BsaJI	CCNNGG	3 cut(s)	701, 839, 847
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	750
BseBI	CCWGG	3 cut(s)	557, 693, 831
BseCI	ATCGAT	1 cut(s)	681
BseDI	CCNNGG	3 cut(s)	701, 839, 847
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseMI	GCAATG	1 cut(s)	750
BseMII	CTCAG	1 cut(s)	504
BseSI	GKGCMC	1 cut(s)	135
BseXI	GCAGC	3 cut(s)	255, 505, 844
BshFI	GGCC	3 cut(s)	278, 490, 722
BshNI	GGYRCC	1 cut(s)	737
BshVI	ATCGAT	1 cut(s)	681
BsiHKAI	GWGCWC	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	847
BsiSI	CCGG	3 cut(s)	20, 604, 848
BslFI	GGGAC	5 cut(s)	182, 719, 782, 801, 864
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmAI	GTCTC	1 cut(s)	554
BsmFI	GGGAC	5 cut(s)	182, 719, 782, 801, 864
BsnI	GGCC	3 cut(s)	278, 490, 722
BsoBI	CYCGRG	1 cut(s)	847
Bsp1286I	GDGCHC	2 cut(s)	78, 135
Bsp143I	GATC	4 cut(s)	259, 678, 697, 766
Bsp19I	CCATGG	2 cut(s)	701, 839
BspACI	CCGC	5 cut(s)	6, 192, 236, 719, 741
BspANI	GGCC	3 cut(s)	278, 490, 722
BspCNI	CTCAG	1 cut(s)	505
BspDI	ATCGAT	1 cut(s)	681
BspLI	GGNNCC	6 cut(s)	48, 326, 628, 739, 789, 845
BspPI	GGATC	3 cut(s)	267, 686, 692
BspQI	GCTCTTC	2 cut(s)	83, 227
BspT107I	GGYRCC	1 cut(s)	737
BsrBI	CCGCTC	1 cut(s)	719
BsrDI	GCAATG	1 cut(s)	750
BssECI	CCNNGG	3 cut(s)	701, 839, 847
BssMI	GATC	4 cut(s)	259, 678, 697, 766
BssNAI	GTATAC	2 cut(s)	360, 618
BssNI	GRCGYC	2 cut(s)	608, 738
BssT1I	CCWWGG	2 cut(s)	701, 839
Bst1107I	GTATAC	2 cut(s)	360, 618
Bst2UI	CCWGG	3 cut(s)	557, 693, 831
Bst4CI	ACNGT	4 cut(s)	343, 565, 622, 819
Bst6I	CTCTTC	2 cut(s)	83, 227
BstACI	GRCGYC	2 cut(s)	608, 738
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	2 cut(s)	513, 674
BstDSI	CCRYGG	2 cut(s)	701, 839
BstH2I	RGCGCY	1 cut(s)	741
BstHHI	GCGC	2 cut(s)	740, 777
BstKTI	GATC	4 cut(s)	262, 681, 700, 769
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	4 cut(s)	259, 678, 697, 766
BstMWI	GCNNNNNNNGC	6 cut(s)	139, 200, 468, 518, 728, 737
BstNI	CCWGG	3 cut(s)	557, 693, 831
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	6 cut(s)	555, 603, 691, 829, 846, 847
BstSFI	CTRYAG	1 cut(s)	564
BstSLI	GKGCMC	1 cut(s)	135
BstV1I	GCAGC	3 cut(s)	255, 505, 844
BstV2I	GAAGAC	1 cut(s)	815
BstX2I	RGATCY	1 cut(s)	766
BstYI	RGATCY	1 cut(s)	766
BstZ17I	GTATAC	2 cut(s)	360, 618
Bsu15I	ATCGAT	1 cut(s)	681
BsuRI	GGCC	3 cut(s)	278, 490, 722
BsuTUI	ATCGAT	1 cut(s)	681
BtgI	CCRYGG	2 cut(s)	701, 839
BtgZI	GCGATG	1 cut(s)	532
BtsIMutI	CAGTG	1 cut(s)	824
Cac8I	GCNNGC	1 cut(s)	280
CaiI	CAGNNNCTG	1 cut(s)	200
CfoI	GCGC	2 cut(s)	740, 777
Cfr13I	GGNCC	3 cut(s)	324, 601, 788
Cfr9I	CCCGGG	1 cut(s)	847
ClaI	ATCGAT	1 cut(s)	681
CseI	GACGC	1 cut(s)	597
Csp6I	GTAC	1 cut(s)	389
CviAII	CATG	7 cut(s)	372, 416, 437, 522, 667, 702, 840
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	2 cut(s)	513, 674
DinI	GGCGCC	1 cut(s)	739
DpnI	GATC	4 cut(s)	261, 680, 699, 768
DpnII	GATC	4 cut(s)	259, 678, 697, 766
DriI	GACNNNNNGTC	2 cut(s)	607, 794
EaeI	YGGCCR	2 cut(s)	488, 720
Eam1104I	CTCTTC	2 cut(s)	83, 227
Eam1105I	GACNNNNNGTC	2 cut(s)	607, 794
EarI	CTCTTC	2 cut(s)	83, 227
EciI	GGCGGA	1 cut(s)	251
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	2 cut(s)	701, 839
Eco24I	GRGCYC	1 cut(s)	78
Eco47I	GGWCC	3 cut(s)	324, 601, 788
Eco53kI	GAGCTC	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	847
EcoICRI	GAGCTC	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	788
EcoRII	CCWGG	3 cut(s)	555, 691, 829
EcoT14I	CCWWGG	2 cut(s)	701, 839
EcoT38I	GRGCYC	1 cut(s)	78
EgeI	GGCGCC	1 cut(s)	739
EheI	GGCGCC	1 cut(s)	739
ErhI	CCWWGG	2 cut(s)	701, 839
FaeI	CATG	7 cut(s)	375, 419, 440, 525, 670, 705, 843
FaqI	GGGAC	5 cut(s)	182, 719, 782, 801, 864
FatI	CATG	7 cut(s)	371, 415, 436, 521, 666, 701, 839
FblI	GTMKAC	2 cut(s)	359, 617
Fnu4HI	GCNGC	5 cut(s)	244, 519, 720, 741, 858
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	5 cut(s)	244, 519, 720, 741, 858
FspBI	CTAG	2 cut(s)	714, 764
GlaI	GCGC	2 cut(s)	739, 776
GluI	GCNGC	5 cut(s)	244, 519, 720, 741, 858
GsuI	CTGGAG	1 cut(s)	578
HaeII	RGCGCY	1 cut(s)	741
HaeIII	GGCC	3 cut(s)	278, 490, 722
HapII	CCGG	3 cut(s)	20, 604, 848
HgaI	GACGC	1 cut(s)	597
HhaI	GCGC	2 cut(s)	740, 777
Hin1I	GRCGYC	2 cut(s)	608, 738
Hin1II	CATG	7 cut(s)	375, 419, 440, 525, 670, 705, 843
Hin6I	GCGC	2 cut(s)	738, 775
HinP1I	GCGC	2 cut(s)	738, 775
HinfI	GANTC	2 cut(s)	52, 123
HpaII	CCGG	3 cut(s)	20, 604, 848
HphI	GGTGA	2 cut(s)	331, 763
Hpy166II	GTNNAC	3 cut(s)	360, 601, 618
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	1 cut(s)	806
Hpy8I	GTNNAC	3 cut(s)	360, 601, 618
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	6 cut(s)	95, 145, 226, 250, 412, 416
HpyCH4III	ACNGT	4 cut(s)	343, 565, 622, 819
HpyCH4V	TGCA	1 cut(s)	521
HpyF10VI	GCNNNNNNNGC	6 cut(s)	139, 200, 468, 518, 728, 737
HpyF3I	CTNAG	2 cut(s)	513, 674
Hsp92I	GRCGYC	2 cut(s)	608, 738
Hsp92II	CATG	7 cut(s)	375, 419, 440, 525, 670, 705, 843
HspAI	GCGC	2 cut(s)	738, 775
KasI	GGCGCC	1 cut(s)	737
Kzo9I	GATC	4 cut(s)	259, 678, 697, 766
LguI	GCTCTTC	2 cut(s)	83, 227
LmnI	GCTCC	3 cut(s)	52, 73, 350
Lsp1109I	GCAGC	3 cut(s)	255, 505, 844
LweI	GCATC	2 cut(s)	718, 786
MaeI	CTAG	2 cut(s)	714, 764
MaeIII	GTNAC	2 cut(s)	439, 751
MalI	GATC	4 cut(s)	261, 680, 699, 768
MbiI	CCGCTC	1 cut(s)	719
MboI	GATC	4 cut(s)	259, 678, 697, 766
MboII	GAAGA	7 cut(s)	26, 70, 73, 214, 328, 388, 815
MflI	RGATCY	1 cut(s)	766
MhlI	GDGCHC	2 cut(s)	78, 135
MlsI	TGGCCA	1 cut(s)	490
MluCI	AATT	8 cut(s)	161, 177, 294, 313, 577, 593, 801, 864
MluNI	TGGCCA	1 cut(s)	490
Mly113I	GGCGCC	1 cut(s)	738
MnlI	CCTC	1 cut(s)	508
Mox20I	TGGCCA	1 cut(s)	490
MroXI	GAANNNNTTC	1 cut(s)	498
MscI	TGGCCA	1 cut(s)	490
Msp20I	TGGCCA	1 cut(s)	490
MspI	CCGG	3 cut(s)	20, 604, 848
MspR9I	CCNGG	6 cut(s)	557, 605, 693, 831, 848, 849
MvaI	CCWGG	3 cut(s)	557, 693, 831
MwoI	GCNNNNNNNGC	6 cut(s)	139, 200, 468, 518, 728, 737
NarI	GGCGCC	1 cut(s)	738
NciI	CCSGG	3 cut(s)	605, 848, 849
NcoI	CCATGG	2 cut(s)	701, 839
NdeII	GATC	4 cut(s)	259, 678, 697, 766
NlaIII	CATG	7 cut(s)	375, 419, 440, 525, 670, 705, 843
NlaIV	GGNNCC	6 cut(s)	48, 326, 628, 739, 789, 845
NmuCI	GTSAC	2 cut(s)	439, 751
NspI	RCATGY	1 cut(s)	419
PciI	ACATGT	1 cut(s)	415
PciSI	GCTCTTC	2 cut(s)	83, 227
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	2 cut(s)	52, 123
PflMI	CCANNNNNTGG	1 cut(s)	285
PkrI	GCNGC	5 cut(s)	245, 520, 721, 742, 859
PluTI	GGCGCC	1 cut(s)	741
PpuMI	RGGWCCY	1 cut(s)	788
PscI	ACATGT	1 cut(s)	415
Psp124BI	GAGCTC	1 cut(s)	78
Psp5II	RGGWCCY	1 cut(s)	788
Psp6I	CCWGG	3 cut(s)	555, 691, 829
PspGI	CCWGG	3 cut(s)	555, 691, 829
PspN4I	GGNNCC	6 cut(s)	48, 326, 628, 739, 789, 845
PspPI	GGNCC	3 cut(s)	324, 601, 788
PspPPI	RGGWCCY	1 cut(s)	788
PstNI	CAGNNNCTG	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	766
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
SacI	GAGCTC	1 cut(s)	78
SapI	GCTCTTC	2 cut(s)	83, 227
SatI	GCNGC	5 cut(s)	244, 519, 720, 741, 858
Sau3AI	GATC	4 cut(s)	259, 678, 697, 766
Sau96I	GGNCC	3 cut(s)	324, 601, 788
ScrFI	CCNGG	6 cut(s)	557, 605, 693, 831, 848, 849
SduI	GDGCHC	2 cut(s)	78, 135
SfaNI	GCATC	2 cut(s)	718, 786
SfcI	CTRYAG	1 cut(s)	564
SfoI	GGCGCC	1 cut(s)	739
SinI	GGWCC	3 cut(s)	324, 601, 788
SmaI	CCCGGG	1 cut(s)	849
Sse9I	AATT	8 cut(s)	161, 177, 294, 313, 577, 593, 801, 864
SsiI	CCGC	5 cut(s)	6, 192, 236, 719, 741
SspDI	GGCGCC	1 cut(s)	737
SspMI	CTAG	2 cut(s)	714, 764
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	6 cut(s)	555, 603, 691, 829, 846, 847
StyI	CCWWGG	2 cut(s)	701, 839
TaaI	ACNGT	4 cut(s)	343, 565, 622, 819
TaqI	TCGA	2 cut(s)	32, 681
TasI	AATT	8 cut(s)	161, 177, 294, 313, 577, 593, 801, 864
TauI	GCSGC	2 cut(s)	722, 743
TfiI	GAWTC	2 cut(s)	52, 123
TscAI	CASTG	1 cut(s)	824
TseFI	GTSAC	2 cut(s)	439, 751
TseI	GCWGC	3 cut(s)	243, 518, 857
Tsp45I	GTSAC	2 cut(s)	439, 751
TspDTI	ATGAA	3 cut(s)	395, 535, 640
TspMI	CCCGGG	1 cut(s)	847
TspRI	CASTG	1 cut(s)	824
Van91I	CCANNNNNTGG	1 cut(s)	285
VpaK11BI	GGWCC	3 cut(s)	324, 601, 788
XapI	RAATTY	1 cut(s)	864
XceI	RCATGY	1 cut(s)	419
XcmI	CCANNNNNNNNNTGG	2 cut(s)	63, 730
XmaI	CCCGGG	1 cut(s)	847
XmiI	GTMKAC	2 cut(s)	359, 617
XmnI	GAANNNNTTC	1 cut(s)	498
XspI	CTAG	2 cut(s)	714, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.