Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008396

Physical Location & Seq

Genomic Coordinates Forward (+)

60075752 .. 60078586

Gene Structure 2835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004531

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGGTGGTAAAAAGGAATCTTCTTCTTCTTCTTCTTCTTCTCCGAGTTTATGGCTGGCTTCCAATCCAAGCAAGCGATGGGGGGAGCTCTTCTTTCTCTTCTACACTCCTTTCTGGCTCACTCTCTGCCTCGGAATCGTCGTCCCTTACAAGCTCTACGAGAGGTTTACGGAATGGGAGTATTTGCTAATTGGATTGGTCTCGGCCGTTCCTTCGTTTTTGTTACCCATGTTATTCGTTGGAAAGGCAGATAGAAGCTTGTGTTGGAAGGATCGGTATTGGGTCAAGGCCAGTGTGTGGACAATACTTTTTAGCTATGTTGGGAATTACTTTTGGACTCACTATTTCTTTACAGTTTTGGGAGCTTCGTATACTTTCCCATCATGGAAAATGAACAATGTACCACATACTACCTTCCTTCTCACACATGTTTGCTTCCTATTTTATCATGTCGGATCAAACATGACGCTTCGCAGACTACGCCATTCTATTGCTGACATGCCAAAACAAGTTCAATTGCTTTTTGAGGCTGCATGGATATTGGCTTTTGCTTATTTCATAGCATACCTGGAGACTGTAGCTATTTCCAATTTCCCTTATTATGAATTTGTCGACCGGGCGATTATGTACAAAGTTGGGTGCTTGTTTTATGCCATCTACTTCATTGTTAGCTTTCCCATGTTTCTGAGGATTGACGAGAAACCTGGTGATGCATGGGACTTGCCAAGAGCCGCCATTGATGCTCTGGGTGCTGCAATGCTGGTGACGATAATACTAGATCTGTGGCGCATATTTCTGGGACCTATTGTTCCGATTCCAGAAACTAAACAGTGCATTCAACCCGGACTACCATGGTTCCCTGGACATGACAACTTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

No domains found.

Protein Analysis

294

Amino Acids

33.99

Weight (kDa)

8.49

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50375 AT5G50375 AT5G50375
fragaria_vesca	FvH4_5g07950 FvH4_5g07950
malus_domestica	MD06G1143700.v1.1 MD14G1159000.v1.1
prunus_persica	Prupe.5G152900_v2.0.a1 Prupe.5G152900_v2.0.a1 Prupe.5G152900_v2.0.a1
pyrus_communis	pycom06g13340 pycom14g13260
rosa_chinensis	RchiOBHm_Chr7g0190451
rosa_laevigata	RLG00000004531
rosa_multiflora	Rmu_sc0002614.1_g000002
rosa_roxburghii	Rroxscaffold_3G00264610
rosa_rugosa	Rorug06G0504700
rosa_samantha	Rh7AG110700 Rh7BG113300 Rh7CG115500 Rh7DG113800
rosa_wichuraiana	Rw0G019870 Rw7G009610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	297
AccI	GTMKAC	2 cut(s)	371, 612
AciI	CCGC	1 cut(s)	732
AclWI	GGATC	2 cut(s)	279, 463
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	605
AfaI	GTAC	2 cut(s)	402, 629
AfiI	CCNNNNNNNGG	1 cut(s)	297
AflIII	ACRYGT	1 cut(s)	427
AgsI	TTSAA	2 cut(s)	515, 839
AjnI	CCWGG	3 cut(s)	567, 703, 859
AjuI	GAANNNNNNNTTGG	2 cut(s)	247, 279
AloI	GAACNNNNNNTCC	2 cut(s)	792, 824
AluBI	AGCT	7 cut(s)	88, 154, 258, 315, 365, 581, 672
AluI	AGCT	7 cut(s)	88, 154, 258, 315, 365, 581, 672
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	2 cut(s)	205, 566
AlwI	GGATC	2 cut(s)	279, 463
AoxI	GGCC	2 cut(s)	204, 288
ApeKI	GCWGC	2 cut(s)	530, 752
ApoI	RAATTY	1 cut(s)	605
AspLEI	GCGC	1 cut(s)	789
AspS9I	GGNCC	1 cut(s)	800
AsuC2I	CCSGG	2 cut(s)	617, 843
AsuHPI	GGTGA	2 cut(s)	719, 775
AvaII	GGWCC	1 cut(s)	800
BanII	GRGCYC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	517, 739
BccI	CCATC	3 cut(s)	72, 388, 662
BceAI	ACGGC	1 cut(s)	191
BciT130I	CCWGG	3 cut(s)	569, 705, 861
BcnI	CCSGG	2 cut(s)	617, 843
BcoDI	GTCTC	2 cut(s)	205, 566
BfaI	CTAG	1 cut(s)	776
BfmI	CTRYAG	1 cut(s)	576
BglII	AGATCT	1 cut(s)	778
BisI	GCNGC	3 cut(s)	531, 732, 753
BlsI	GCNGC	3 cut(s)	532, 733, 754
Bme1390I	CCNGG	5 cut(s)	569, 617, 705, 843, 861
Bme18I	GGWCC	1 cut(s)	800
BmgT120I	GGNCC	1 cut(s)	800
BmiI	GGNNCC	2 cut(s)	801, 857
BmrFI	CCNGG	5 cut(s)	569, 617, 705, 843, 861
BmsI	GCATC	2 cut(s)	700, 730
BpmI	CTGGAG	1 cut(s)	590
BpuMI	CCSGG	2 cut(s)	617, 843
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	3 cut(s)	130, 851, 859
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse1I	ACTGG	1 cut(s)	291
Bse3DI	GCAATG	1 cut(s)	762
BseBI	CCWGG	3 cut(s)	569, 705, 861
BseDI	CCNNGG	3 cut(s)	130, 851, 859
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMI	GCAATG	1 cut(s)	762
BseMII	CTCAG	1 cut(s)	677
BseNI	ACTGG	1 cut(s)	291
BseX3I	CGGCCG	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	517, 739
Bsh1285I	CGRYCG	2 cut(s)	207, 616
BshFI	GGCC	2 cut(s)	206, 290
BsiEI	CGRYCG	2 cut(s)	207, 616
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	2 cut(s)	616, 843
BslFI	GGGAC	3 cut(s)	128, 731, 813
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmAI	GTCTC	2 cut(s)	205, 566
BsmFI	GGGAC	3 cut(s)	128, 731, 813
BsmI	GAATGC	1 cut(s)	834
BsnI	GGCC	2 cut(s)	206, 290
Bso31I	GGTCTC	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp1407I	TGTACA	1 cut(s)	627
Bsp143I	GATC	3 cut(s)	271, 455, 778
Bsp19I	CCATGG	1 cut(s)	851
BspACI	CCGC	1 cut(s)	732
BspANI	GGCC	2 cut(s)	206, 290
BspCNI	CTCAG	1 cut(s)	678
BspLI	GGNNCC	2 cut(s)	801, 857
BspPI	GGATC	2 cut(s)	279, 463
BspQI	GCTCTTC	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	762
BsrGI	TGTACA	1 cut(s)	627
BsrI	ACTGG	1 cut(s)	291
BssECI	CCNNGG	3 cut(s)	130, 851, 859
BssMI	GATC	3 cut(s)	271, 455, 778
BssNAI	GTATAC	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	851
Bst1107I	GTATAC	1 cut(s)	372
Bst2UI	CCWGG	3 cut(s)	569, 705, 861
Bst4CI	ACNGT	3 cut(s)	355, 577, 831
Bst6I	CTCTTC	2 cut(s)	95, 104
BstAUI	TGTACA	1 cut(s)	627
BstC8I	GCNNGC	2 cut(s)	57, 74
BstDEI	CTNAG	1 cut(s)	686
BstDSI	CCRYGG	1 cut(s)	851
BstHHI	GCGC	1 cut(s)	789
BstKTI	GATC	3 cut(s)	274, 458, 781
BstMAI	GTCTC	2 cut(s)	205, 566
BstMBI	GATC	3 cut(s)	271, 455, 778
BstMCI	CGRYCG	2 cut(s)	207, 616
BstMWI	GCNNNNNNNGC	3 cut(s)	480, 740, 749
BstNI	CCWGG	3 cut(s)	569, 705, 861
BstNSI	RCATGY	2 cut(s)	431, 502
BstSCI	CCNGG	5 cut(s)	567, 615, 703, 841, 859
BstSFI	CTRYAG	1 cut(s)	576
BstV1I	GCAGC	2 cut(s)	517, 739
BstX2I	RGATCY	1 cut(s)	778
BstYI	RGATCY	1 cut(s)	778
BstZ17I	GTATAC	1 cut(s)	372
BstZI	CGGCCG	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	206, 290
BtgI	CCRYGG	1 cut(s)	851
BtgZI	GCGATG	1 cut(s)	91
BtsIMutI	CAGTG	2 cut(s)	298, 836
Cac8I	GCNNGC	2 cut(s)	57, 74
CfoI	GCGC	1 cut(s)	789
Cfr13I	GGNCC	1 cut(s)	800
CseI	GACGC	1 cut(s)	475
CsiI	ACCWGGT	1 cut(s)	703
Csp6I	GTAC	2 cut(s)	401, 628
CviQI	GTAC	2 cut(s)	401, 628
DdeI	CTNAG	1 cut(s)	686
DpnI	GATC	3 cut(s)	273, 457, 780
DpnII	GATC	3 cut(s)	271, 455, 778
EaeI	YGGCCR	1 cut(s)	204
EagI	CGGCCG	1 cut(s)	204
Eam1104I	CTCTTC	2 cut(s)	95, 104
EarI	CTCTTC	2 cut(s)	95, 104
Ecl136II	GAGCTC	1 cut(s)	88
EclXI	CGGCCG	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	851
Eco24I	GRGCYC	1 cut(s)	90
Eco31I	GGTCTC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	800
Eco52I	CGGCCG	1 cut(s)	204
Eco53kI	GAGCTC	1 cut(s)	88
EcoICRI	GAGCTC	1 cut(s)	88
EcoO109I	RGGNCCY	1 cut(s)	800
EcoRII	CCWGG	3 cut(s)	567, 703, 859
EcoT14I	CCWWGG	1 cut(s)	851
EcoT22I	ATGCAT	1 cut(s)	715
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	851
FaqI	GGGAC	3 cut(s)	128, 731, 813
FblI	GTMKAC	2 cut(s)	371, 612
Fnu4HI	GCNGC	3 cut(s)	531, 732, 753
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	3 cut(s)	531, 732, 753
FspBI	CTAG	1 cut(s)	776
GlaI	GCGC	1 cut(s)	788
GluI	GCNGC	3 cut(s)	531, 732, 753
GsuI	CTGGAG	1 cut(s)	590
HaeIII	GGCC	2 cut(s)	206, 290
HapII	CCGG	2 cut(s)	616, 843
HgaI	GACGC	1 cut(s)	475
HhaI	GCGC	1 cut(s)	789
Hin6I	GCGC	1 cut(s)	787
HinP1I	GCGC	1 cut(s)	787
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HindIII	AAGCTT	1 cut(s)	256
HinfI	GANTC	4 cut(s)	17, 135, 337, 814
HpaII	CCGG	2 cut(s)	616, 843
HphI	GGTGA	2 cut(s)	719, 775
Hpy166II	GTNNAC	4 cut(s)	168, 300, 372, 613
Hpy188I	TCNGA	5 cut(s)	45, 134, 455, 687, 813
Hpy188III	TCNNGA	1 cut(s)	818
Hpy8I	GTNNAC	4 cut(s)	168, 300, 372, 613
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	4 cut(s)	222, 262, 424, 428
HpyCH4III	ACNGT	3 cut(s)	355, 577, 831
HpyCH4V	TGCA	4 cut(s)	533, 713, 755, 834
HpyF10VI	GCNNNNNNNGC	3 cut(s)	480, 740, 749
HpyF3I	CTNAG	1 cut(s)	686
HspAI	GCGC	1 cut(s)	787
Kzo9I	GATC	3 cut(s)	271, 455, 778
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	2 cut(s)	85, 362
Lsp1109I	GCAGC	2 cut(s)	517, 739
LweI	GCATC	2 cut(s)	700, 730
MabI	ACCWGGT	1 cut(s)	703
MaeI	CTAG	1 cut(s)	776
MaeIII	GTNAC	2 cut(s)	222, 763
MalI	GATC	3 cut(s)	273, 457, 780
MboI	GATC	3 cut(s)	271, 455, 778
MboII	GAAGA	9 cut(s)	12, 15, 18, 21, 24, 27, 30, 82, 91
MfeI	CAATTG	1 cut(s)	515
MflI	RGATCY	1 cut(s)	778
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	5 cut(s)	189, 325, 515, 589, 605
MlyI	GAGTC	1 cut(s)	331
MmeI	TCCRAC	3 cut(s)	220, 245, 433
MnlI	CCTC	4 cut(s)	140, 156, 520, 681
Mph1103I	ATGCAT	1 cut(s)	715
MspI	CCGG	2 cut(s)	616, 843
MspR9I	CCNGG	5 cut(s)	569, 617, 705, 843, 861
MunI	CAATTG	1 cut(s)	515
Mva1269I	GAATGC	1 cut(s)	834
MvaI	CCWGG	3 cut(s)	569, 705, 861
MwoI	GCNNNNNNNGC	3 cut(s)	480, 740, 749
NciI	CCSGG	2 cut(s)	617, 843
NcoI	CCATGG	1 cut(s)	851
NdeII	GATC	3 cut(s)	271, 455, 778
NlaIV	GGNNCC	2 cut(s)	801, 857
NmeAIII	GCCGAG	1 cut(s)	182
NmuCI	GTSAC	1 cut(s)	763
NsiI	ATGCAT	1 cut(s)	715
NspI	RCATGY	2 cut(s)	431, 502
PciI	ACATGT	1 cut(s)	427
PciSI	GCTCTTC	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PctI	GAATGC	1 cut(s)	834
PfeI	GAWTC	3 cut(s)	17, 135, 814
PflMI	CCANNNNNTGG	1 cut(s)	297
PkrI	GCNGC	3 cut(s)	532, 733, 754
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
PpuMI	RGGWCCY	1 cut(s)	800
PscI	ACATGT	1 cut(s)	427
Psp124BI	GAGCTC	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	800
Psp6I	CCWGG	3 cut(s)	567, 703, 859
PspGI	CCWGG	3 cut(s)	567, 703, 859
PspN4I	GGNNCC	2 cut(s)	801, 857
PspPI	GGNCC	1 cut(s)	800
PspPPI	RGGWCCY	1 cut(s)	800
PsuI	RGATCY	1 cut(s)	778
RsaI	GTAC	2 cut(s)	402, 629
RsaNI	GTAC	2 cut(s)	401, 628
SacI	GAGCTC	1 cut(s)	90
SalI	GTCGAC	1 cut(s)	611
SapI	GCTCTTC	1 cut(s)	95
SatI	GCNGC	3 cut(s)	531, 732, 753
Sau3AI	GATC	3 cut(s)	271, 455, 778
Sau96I	GGNCC	1 cut(s)	800
SchI	GAGTC	1 cut(s)	331
ScrFI	CCNGG	5 cut(s)	569, 617, 705, 843, 861
SduI	GDGCHC	1 cut(s)	90
SexAI	ACCWGGT	1 cut(s)	703
SfaNI	GCATC	2 cut(s)	700, 730
SfcI	CTRYAG	1 cut(s)	576
SinI	GGWCC	1 cut(s)	800
Sse9I	AATT	5 cut(s)	189, 325, 515, 589, 605
SsiI	CCGC	1 cut(s)	732
SspMI	CTAG	1 cut(s)	776
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	5 cut(s)	567, 615, 703, 841, 859
StyI	CCWWGG	1 cut(s)	851
TaaI	ACNGT	3 cut(s)	355, 577, 831
TaqI	TCGA	1 cut(s)	612
TasI	AATT	5 cut(s)	189, 325, 515, 589, 605
TatI	WGTACW	1 cut(s)	627
TauI	GCSGC	1 cut(s)	734
TfiI	GAWTC	3 cut(s)	17, 135, 814
TscAI	CASTG	2 cut(s)	298, 836
TseFI	GTSAC	1 cut(s)	763
TseI	GCWGC	2 cut(s)	530, 752
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	4 cut(s)	407, 547, 618, 652
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	2 cut(s)	298, 836
Van91I	CCANNNNNTGG	1 cut(s)	297
VpaK11BI	GGWCC	1 cut(s)	800
XapI	RAATTY	1 cut(s)	605
XceI	RCATGY	2 cut(s)	431, 502
XcmI	CCANNNNNNNNNTGG	2 cut(s)	75, 742
XmiI	GTMKAC	2 cut(s)	371, 612
XspI	CTAG	1 cut(s)	776
Zsp2I	ATGCAT	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.