Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002614.1

Orthogroup ID

OG0008396

Physical Location & Seq

Genomic Coordinates Forward (+)

3957 .. 9518

Gene Structure 5562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002614.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

atgttgggatctccctttccctcgtttgcaagtgcttaccaggctatatccaaaggcggctttctttccagttgtcttgatgggggaacgtcgtggacgtccgctagagcaatgatgggcggaggccgcctctttgtaggatcagaaccgttcgatctgggtatgggagatgaagggaagtcctttctcggaaggctagagaagaactttgtggcgagattggtgctctcctcgtccacaacaattgaagaagaagtcaggtcaagggactctcccgacgactgcaccccacggtgctggcacgcctgcgcacacgctcaaaagagacagtttgcacaccaactggttttggagccaaacaattgctatggctgtgttaagtgttgcgacgtacaccaagaaggtcttaggtgctacgatgttcaaaccagtggttccattttagggcagtgtaggggctctcaacccatccctctcacctaccgatccgattccaattccaaaatgggtggtaaaaaggaatcttcttcttcttctccgagtttatggctggcttccaatccaagcaagcgatggggggagctcttctttctcttctacactcctttctggctcactctctgcctcggaatcgtcgtcccctacaagctctacgagaggtttacggaatgggagtatttgctaattggattggtctcggctgttccttcgtttttgttacccatgttattcgttggaaagaggtttacggaatgggagtatttgctaattggattggtctcggctgttccttcgtttttgttacccatgttattcgttggaaaggcagatagaagcttgtgttggaaggatcggtattgggtcaaggccagtgtgtggacaatactttttagctatgttgggaattacttttggacccactatttcttcacggttttgggagcttcgtatactttcccgtcatggaaaatgaacaatgtaccacatactaccttccttcttacacatgtttgcttcctattttatcatgtcggatcaaacatgacgcttcgcagactacgccattctattgctgacatgccaaaacaagttcaattgctttttgaggctgcatggatattggcttttgcttatttcatagcatacctggagactgtagctatttccaacttcccttattatgaaattgtcgaccgggcgattatgtacaaagttgggtgcttgttttatgccatctacttcattgttagctttcccatgtttcttaggattgacgagaaacctggtgatgcatgggacttgccaagagccgccattgatgctctgggtgctgcaatgctggtgacgataatactagatctatggcgcatatttctgggacctattgtttcgattccagaaactaaacagtgcattcaacccggactaccatggttccctggacatgacaacatgacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

No domains found.

Protein Analysis

486

Amino Acids

55.13

Weight (kDa)

8.09

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50375 AT5G50375 AT5G50375
fragaria_vesca	FvH4_5g07950 FvH4_5g07950
malus_domestica	MD06G1143700.v1.1 MD14G1159000.v1.1
prunus_persica	Prupe.5G152900_v2.0.a1 Prupe.5G152900_v2.0.a1 Prupe.5G152900_v2.0.a1
pyrus_communis	pycom06g13340 pycom14g13260
rosa_chinensis	RchiOBHm_Chr7g0190451
rosa_laevigata	RLG00000004531
rosa_multiflora	Rmu_sc0002614.1_g000002
rosa_roxburghii	Rroxscaffold_3G00264610
rosa_rugosa	Rorug06G0504700
rosa_samantha	Rh7AG110700 Rh7BG113300 Rh7CG115500 Rh7DG113800
rosa_wichuraiana	Rw0G019870 Rw7G009610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	101
Acc16I	TGCGCA	1 cut(s)	310
AccB7I	CCANNNNNTGG	1 cut(s)	876
AccI	GTMKAC	2 cut(s)	950, 1191
AciI	CCGC	5 cut(s)	57, 102, 120, 127, 1311
AclWI	GGATC	5 cut(s)	16, 148, 480, 858, 1042
AcyI	GRCGYC	1 cut(s)	98
AfaI	GTAC	3 cut(s)	393, 981, 1208
AfiI	CCNNNNNNNGG	2 cut(s)	444, 876
AflIII	ACRYGT	1 cut(s)	1006
AgsI	TTSAA	4 cut(s)	248, 425, 1094, 1418
AjnI	CCWGG	4 cut(s)	39, 1146, 1282, 1438
AjuI	GAANNNNNNNTTGG	2 cut(s)	826, 858
AluBI	AGCT	7 cut(s)	583, 649, 837, 894, 944, 1160, 1251
AluI	AGCT	7 cut(s)	583, 649, 837, 894, 944, 1160, 1251
Alw21I	GWGCWC	2 cut(s)	228, 585
Alw26I	GTCTC	4 cut(s)	319, 700, 784, 1145
AlwI	GGATC	5 cut(s)	16, 148, 480, 858, 1042
AoxI	GGCC	2 cut(s)	124, 867
ApeKI	GCWGC	2 cut(s)	1109, 1331
AspLEI	GCGC	2 cut(s)	311, 1368
AspS9I	GGNCC	2 cut(s)	915, 1379
AsuC2I	CCSGG	2 cut(s)	1196, 1422
AsuHPI	GGTGA	3 cut(s)	469, 1298, 1354
AvaII	GGWCC	2 cut(s)	915, 1379
BanII	GRGCYC	2 cut(s)	461, 585
Bbv12I	GWGCWC	2 cut(s)	228, 585
BbvI	GCAGC	2 cut(s)	1096, 1318
BccI	CCATC	5 cut(s)	74, 109, 476, 567, 1241
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BciT130I	CCWGG	4 cut(s)	41, 1148, 1284, 1440
BcnI	CCSGG	2 cut(s)	1196, 1422
BcoDI	GTCTC	4 cut(s)	319, 700, 784, 1145
BfaI	CTAG	3 cut(s)	105, 197, 1355
BfmI	CTRYAG	1 cut(s)	1155
BglII	AGATCT	1 cut(s)	1357
BisI	GCNGC	5 cut(s)	58, 127, 1110, 1311, 1332
BlsI	GCNGC	5 cut(s)	59, 128, 1111, 1312, 1333
Bme1390I	CCNGG	6 cut(s)	41, 1148, 1196, 1284, 1422, 1440
Bme18I	GGWCC	2 cut(s)	915, 1379
BmgT120I	GGNCC	2 cut(s)	915, 1379
BmiI	GGNNCC	5 cut(s)	354, 436, 917, 1380, 1436
BmrFI	CCNGG	6 cut(s)	41, 1148, 1196, 1284, 1422, 1440
BmsI	GCATC	2 cut(s)	1279, 1309
BplI	GAGNNNNNCTC	2 cut(s)	114, 146
BpmI	CTGGAG	1 cut(s)	1169
BpuMI	CCSGG	2 cut(s)	1196, 1422
BsaHI	GRCGYC	1 cut(s)	98
BsaI	GGTCTC	2 cut(s)	700, 784
BsaJI	CCNNGG	4 cut(s)	290, 625, 1430, 1438
Bsc4I	CCNNNNNNNGG	2 cut(s)	444, 876
Bse1I	ACTGG	4 cut(s)	69, 348, 429, 870
Bse3DI	GCAATG	2 cut(s)	117, 1341
BseBI	CCWGG	4 cut(s)	41, 1148, 1284, 1440
BseDI	CCNNGG	4 cut(s)	290, 625, 1430, 1438
BseGI	GGATG	1 cut(s)	468
BseLI	CCNNNNNNNGG	2 cut(s)	444, 876
BseMI	GCAATG	2 cut(s)	117, 1341
BseNI	ACTGG	4 cut(s)	69, 348, 429, 870
BseRI	GAGGAG	1 cut(s)	220
BseXI	GCAGC	2 cut(s)	1096, 1318
BsgI	GTGCAG	1 cut(s)	268
Bsh1285I	CGRYCG	1 cut(s)	1195
BshFI	GGCC	2 cut(s)	126, 869
BsiEI	CGRYCG	1 cut(s)	1195
BsiHKAI	GWGCWC	2 cut(s)	228, 585
BsiSI	CCGG	2 cut(s)	1195, 1422
BslFI	GGGAC	4 cut(s)	281, 623, 1310, 1392
BslI	CCNNNNNNNGG	2 cut(s)	444, 876
BsmAI	GTCTC	4 cut(s)	319, 700, 784, 1145
BsmFI	GGGAC	4 cut(s)	281, 623, 1310, 1392
BsmI	GAATGC	1 cut(s)	1413
BsnI	GGCC	2 cut(s)	126, 869
Bso31I	GGTCTC	2 cut(s)	700, 784
Bsp1286I	GDGCHC	3 cut(s)	228, 461, 585
Bsp1407I	TGTACA	1 cut(s)	1206
Bsp143I	GATC	7 cut(s)	8, 140, 154, 485, 850, 1034, 1357
Bsp19I	CCATGG	1 cut(s)	1430
BspACI	CCGC	5 cut(s)	57, 102, 120, 127, 1311
BspANI	GGCC	2 cut(s)	126, 869
BspLI	GGNNCC	5 cut(s)	354, 436, 917, 1380, 1436
BspPI	GGATC	5 cut(s)	16, 148, 480, 858, 1042
BspQI	GCTCTTC	1 cut(s)	590
BspTNI	GGTCTC	2 cut(s)	700, 784
BsrDI	GCAATG	2 cut(s)	117, 1341
BsrGI	TGTACA	1 cut(s)	1206
BsrI	ACTGG	4 cut(s)	69, 348, 429, 870
BssECI	CCNNGG	4 cut(s)	290, 625, 1430, 1438
BssMI	GATC	7 cut(s)	8, 140, 154, 485, 850, 1034, 1357
BssNAI	GTATAC	1 cut(s)	951
BssNI	GRCGYC	1 cut(s)	98
BssT1I	CCWWGG	1 cut(s)	1430
Bst1107I	GTATAC	1 cut(s)	951
Bst2UI	CCWGG	4 cut(s)	41, 1148, 1284, 1440
Bst4CI	ACNGT	6 cut(s)	150, 294, 330, 934, 1156, 1410
Bst6I	CTCTTC	2 cut(s)	590, 599
BstACI	GRCGYC	1 cut(s)	98
BstAUI	TGTACA	1 cut(s)	1206
BstC8I	GCNNGC	5 cut(s)	299, 303, 307, 552, 569
BstDEI	CTNAG	2 cut(s)	407, 1265
BstDSI	CCRYGG	2 cut(s)	290, 1430
BstF5I	GGATG	1 cut(s)	468
BstHHI	GCGC	2 cut(s)	311, 1368
BstKTI	GATC	7 cut(s)	11, 143, 157, 488, 853, 1037, 1360
BstMAI	GTCTC	4 cut(s)	319, 700, 784, 1145
BstMBI	GATC	7 cut(s)	8, 140, 154, 485, 850, 1034, 1357
BstMCI	CGRYCG	1 cut(s)	1195
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 126, 1059, 1319, 1328
BstNI	CCWGG	4 cut(s)	41, 1148, 1284, 1440
BstNSI	RCATGY	2 cut(s)	1010, 1081
BstSCI	CCNGG	6 cut(s)	39, 1146, 1194, 1282, 1420, 1438
BstSFI	CTRYAG	1 cut(s)	1155
BstV1I	GCAGC	2 cut(s)	1096, 1318
BstX2I	RGATCY	2 cut(s)	8, 1357
BstXI	CCANNNNNNTGG	1 cut(s)	297
BstYI	RGATCY	2 cut(s)	8, 1357
BstZ17I	GTATAC	1 cut(s)	951
BsuRI	GGCC	2 cut(s)	126, 869
BtgI	CCRYGG	2 cut(s)	290, 1430
BtgZI	GCGATG	1 cut(s)	586
BtsCI	GGATG	1 cut(s)	468
BtsI	GCAGTG	1 cut(s)	455
BtsIMutI	CAGTG	4 cut(s)	436, 455, 877, 1415
Cac8I	GCNNGC	5 cut(s)	299, 303, 307, 552, 569
CfoI	GCGC	2 cut(s)	311, 1368
Cfr13I	GGNCC	2 cut(s)	915, 1379
CseI	GACGC	1 cut(s)	1054
CsiI	ACCWGGT	1 cut(s)	1282
Csp6I	GTAC	3 cut(s)	392, 980, 1207
CspCI	CAANNNNNGTGG	4 cut(s)	226, 261, 490, 525
CviQI	GTAC	3 cut(s)	392, 980, 1207
DdeI	CTNAG	2 cut(s)	407, 1265
DpnI	GATC	7 cut(s)	10, 142, 156, 487, 852, 1036, 1359
DpnII	GATC	7 cut(s)	8, 140, 154, 485, 850, 1034, 1357
Eam1104I	CTCTTC	2 cut(s)	590, 599
EarI	CTCTTC	2 cut(s)	590, 599
EciI	GGCGGA	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	583
Eco130I	CCWWGG	1 cut(s)	1430
Eco24I	GRGCYC	2 cut(s)	461, 585
Eco31I	GGTCTC	2 cut(s)	700, 784
Eco47I	GGWCC	2 cut(s)	915, 1379
Eco53kI	GAGCTC	1 cut(s)	583
EcoICRI	GAGCTC	1 cut(s)	583
EcoO109I	RGGNCCY	1 cut(s)	1379
EcoRII	CCWGG	4 cut(s)	39, 1146, 1282, 1438
EcoT14I	CCWWGG	1 cut(s)	1430
EcoT22I	ATGCAT	1 cut(s)	1294
EcoT38I	GRGCYC	2 cut(s)	461, 585
ErhI	CCWWGG	1 cut(s)	1430
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FaqI	GGGAC	4 cut(s)	281, 623, 1310, 1392
FblI	GTMKAC	2 cut(s)	950, 1191
Fnu4HI	GCNGC	5 cut(s)	58, 127, 1110, 1311, 1332
FokI	GGATG	1 cut(s)	455
FriOI	GRGCYC	2 cut(s)	461, 585
Fsp4HI	GCNGC	5 cut(s)	58, 127, 1110, 1311, 1332
FspBI	CTAG	3 cut(s)	105, 197, 1355
FspI	TGCGCA	1 cut(s)	310
GlaI	GCGC	2 cut(s)	310, 1367
GluI	GCNGC	5 cut(s)	58, 127, 1110, 1311, 1332
GsuI	CTGGAG	1 cut(s)	1169
HaeIII	GGCC	2 cut(s)	126, 869
HapII	CCGG	2 cut(s)	1195, 1422
HgaI	GACGC	1 cut(s)	1054
HhaI	GCGC	2 cut(s)	311, 1368
Hin1I	GRCGYC	1 cut(s)	98
Hin6I	GCGC	2 cut(s)	309, 1366
HinP1I	GCGC	2 cut(s)	309, 1366
HincII	GTYRAC	1 cut(s)	1192
HindII	GTYRAC	1 cut(s)	1192
HindIII	AAGCTT	1 cut(s)	835
HinfI	GANTC	5 cut(s)	269, 491, 521, 630, 1393
HpaII	CCGG	2 cut(s)	1195, 1422
HphI	GGTGA	3 cut(s)	469, 1298, 1354
Hpy166II	GTNNAC	8 cut(s)	96, 237, 394, 663, 747, 879, 951, 1192
Hpy188I	TCNGA	6 cut(s)	145, 191, 490, 540, 629, 1034
Hpy188III	TCNNGA	3 cut(s)	77, 275, 1397
Hpy8I	GTNNAC	8 cut(s)	96, 237, 394, 663, 747, 879, 951, 1192
Hpy99I	CGWCG	4 cut(s)	94, 281, 392, 638
HpyAV	CCTTC	8 cut(s)	167, 186, 395, 717, 801, 841, 1003, 1007
HpyCH4III	ACNGT	6 cut(s)	150, 294, 330, 934, 1156, 1410
HpyCH4IV	ACGT	3 cut(s)	89, 98, 390
HpyCH4V	TGCA	7 cut(s)	29, 285, 335, 1112, 1292, 1334, 1413
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 126, 1059, 1319, 1328
HpyF3I	CTNAG	2 cut(s)	407, 1265
HpySE526I	ACGT	3 cut(s)	89, 98, 390
Hsp92I	GRCGYC	1 cut(s)	98
HspAI	GCGC	2 cut(s)	309, 1366
Kzo9I	GATC	7 cut(s)	8, 140, 154, 485, 850, 1034, 1357
LguI	GCTCTTC	1 cut(s)	590
LmnI	GCTCC	3 cut(s)	352, 580, 941
Lsp1109I	GCAGC	2 cut(s)	1096, 1318
LweI	GCATC	2 cut(s)	1279, 1309
MabI	ACCWGGT	1 cut(s)	1282
MaeI	CTAG	3 cut(s)	105, 197, 1355
MaeII	ACGT	3 cut(s)	89, 98, 390
MaeIII	GTNAC	3 cut(s)	717, 801, 1342
MalI	GATC	7 cut(s)	10, 142, 156, 487, 852, 1036, 1359
MboI	GATC	7 cut(s)	8, 140, 154, 485, 850, 1034, 1357
MfeI	CAATTG	3 cut(s)	243, 361, 1094
MflI	RGATCY	2 cut(s)	8, 1357
MhlI	GDGCHC	3 cut(s)	228, 461, 585
MluCI	AATT	8 cut(s)	243, 361, 496, 684, 768, 904, 1094, 1185
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	5 cut(s)	715, 799, 824, 1012, 1191
MnlI	CCTC	9 cut(s)	31, 116, 140, 241, 483, 635, 651, 735, 1099
Mph1103I	ATGCAT	1 cut(s)	1294
MseI	TTAA	1 cut(s)	378
MspI	CCGG	2 cut(s)	1195, 1422
MspR9I	CCNGG	6 cut(s)	41, 1148, 1196, 1284, 1422, 1440
MunI	CAATTG	3 cut(s)	243, 361, 1094
Mva1269I	GAATGC	1 cut(s)	1413
MvaI	CCWGG	4 cut(s)	41, 1148, 1284, 1440
MwoI	GCNNNNNNNGC	5 cut(s)	41, 126, 1059, 1319, 1328
NciI	CCSGG	2 cut(s)	1196, 1422
NcoI	CCATGG	1 cut(s)	1430
NdeII	GATC	7 cut(s)	8, 140, 154, 485, 850, 1034, 1357
NlaIV	GGNNCC	5 cut(s)	354, 436, 917, 1380, 1436
NmeAIII	GCCGAG	2 cut(s)	677, 761
NmuCI	GTSAC	1 cut(s)	1342
NsbI	TGCGCA	1 cut(s)	310
NsiI	ATGCAT	1 cut(s)	1294
NspI	RCATGY	2 cut(s)	1010, 1081
PciI	ACATGT	1 cut(s)	1006
PciSI	GCTCTTC	1 cut(s)	590
PcsI	WCGNNNNNNNCGW	2 cut(s)	95, 633
PctI	GAATGC	1 cut(s)	1413
PfeI	GAWTC	4 cut(s)	491, 521, 630, 1393
PflMI	CCANNNNNTGG	1 cut(s)	876
PkrI	GCNGC	5 cut(s)	59, 128, 1111, 1312, 1333
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
PpuMI	RGGWCCY	1 cut(s)	1379
PscI	ACATGT	1 cut(s)	1006
Psp124BI	GAGCTC	1 cut(s)	585
Psp5II	RGGWCCY	1 cut(s)	1379
Psp6I	CCWGG	4 cut(s)	39, 1146, 1282, 1438
PspGI	CCWGG	4 cut(s)	39, 1146, 1282, 1438
PspN4I	GGNNCC	5 cut(s)	354, 436, 917, 1380, 1436
PspPI	GGNCC	2 cut(s)	915, 1379
PspPPI	RGGWCCY	1 cut(s)	1379
PsuI	RGATCY	2 cut(s)	8, 1357
RsaI	GTAC	3 cut(s)	393, 981, 1208
RsaNI	GTAC	3 cut(s)	392, 980, 1207
SacI	GAGCTC	1 cut(s)	585
SalI	GTCGAC	1 cut(s)	1190
SapI	GCTCTTC	1 cut(s)	590
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	5 cut(s)	58, 127, 1110, 1311, 1332
Sau3AI	GATC	7 cut(s)	8, 140, 154, 485, 850, 1034, 1357
Sau96I	GGNCC	2 cut(s)	915, 1379
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	6 cut(s)	41, 1148, 1196, 1284, 1422, 1440
SduI	GDGCHC	3 cut(s)	228, 461, 585
SexAI	ACCWGGT	1 cut(s)	1282
SfaNI	GCATC	2 cut(s)	1279, 1309
SfcI	CTRYAG	1 cut(s)	1155
SinI	GGWCC	2 cut(s)	915, 1379
Sse9I	AATT	8 cut(s)	243, 361, 496, 684, 768, 904, 1094, 1185
SsiI	CCGC	5 cut(s)	57, 102, 120, 127, 1311
SspMI	CTAG	3 cut(s)	105, 197, 1355
SstI	GAGCTC	1 cut(s)	585
StyD4I	CCNGG	6 cut(s)	39, 1146, 1194, 1282, 1420, 1438
StyI	CCWWGG	1 cut(s)	1430
TaaI	ACNGT	6 cut(s)	150, 294, 330, 934, 1156, 1410
TaiI	ACGT	3 cut(s)	92, 101, 393
TaqI	TCGA	3 cut(s)	153, 1191, 1391
TasI	AATT	8 cut(s)	243, 361, 496, 684, 768, 904, 1094, 1185
TatI	WGTACW	1 cut(s)	1206
TauI	GCSGC	3 cut(s)	60, 129, 1313
TfiI	GAWTC	4 cut(s)	491, 521, 630, 1393
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	4 cut(s)	436, 455, 877, 1415
TseFI	GTSAC	1 cut(s)	1342
TseI	GCWGC	2 cut(s)	1109, 1331
Tsp45I	GTSAC	1 cut(s)	1342
TspDTI	ATGAA	5 cut(s)	186, 986, 1126, 1197, 1231
TspGWI	ACGGA	2 cut(s)	680, 764
TspRI	CASTG	4 cut(s)	436, 455, 877, 1415
Van91I	CCANNNNNTGG	1 cut(s)	876
VpaK11BI	GGWCC	2 cut(s)	915, 1379
XceI	RCATGY	2 cut(s)	1010, 1081
XcmI	CCANNNNNNNNNTGG	3 cut(s)	502, 570, 1321
XmiI	GTMKAC	2 cut(s)	950, 1191
XspI	CTAG	3 cut(s)	105, 197, 1355
ZraI	GACGTC	1 cut(s)	99
Zsp2I	ATGCAT	1 cut(s)	1294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.