pycom06g13340

Cycloeucalenol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0008396
Physical Location & Seq
Reverse (-)
18357397 .. 18359893
2497 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g13340.7

Sequence Viewer

Length: 870 bp
ATGGGCGGTAAAGAAGAATCGGATTGTTATTCGAGTTTATGGTTGGCTCCAAATCCAAGCAAGAGATGGGGGGAGCTCTTCTTCCTTCTCTACACTCCCTTCTGGCTCACTCTCTGCTTGGGAATCGTCGTGCCCTTCAAGCTCTACGAGAGCTTTACGGAGTTGGAGTATTTGCTAATTGGATTGGTTTCAGCAGTCCCTGCATTTTTGTTGCCGATGCTCTTCGTCGGGAAGGCAGATATCCGCTTGGCTTGGAAGGATCGTTATTGGGTGAAGGCCAGCGTGTGGGTTATAATTTTTAGCTACGTTGGGAATTACTTTTGGACCCACTATTTCTTCACCGTTTTGGGAGCTTCGTATACTTTCCCATCATGGAAAATGAACAATGTACCGCACACTACCTTTCTTCTCACACATGTTTGCTTCCTATTTTATCATGTCACATCCAATATAACGCTTCGCAGACTACGCCATTTTACTGCTGGATGTCCAGAACAAGTTCAATGGGTTGCTGAGGCTGCATGGATTTTGGCTCTTTCTTATTTCATCGCATACCTGGAGACTGTAGCTATTTCTAATTTCCCTTACTATCAATTTGTGGACCGGGCGTCTATGTACACAGTTGGGTCCTTGTTTTATGCTATCTACTTCATTGTTAGCTTTCCCATGTTTCTGAGGATTGATGAGAAGCCTGGGGATCCATGGGACTTGCCTAGAGCGGCTATCGATGCTCTTGGCGCTGCAATGCTGGTCACCATAATATTAGATCTATGGCGCATCTTTCTGGGACCTATTATCCCAATTCCAGAAACAAAACAGTGTCTTCAACCTGGACTGCCATGGTTCCCGGGACACGCAGCCCAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko00100 ko01100 ko01110 map00100 map01100 map01110
Pfam Domains
Protein Families
No domains found.

Protein Analysis

290

Amino Acids

33.41

Weight (kDa)

6.58

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 293
AccB7I CCANNNNNTGG 1 cut(s) 285
AccBSI CCGCTC 1 cut(s) 719
AccI GTMKAC 1 cut(s) 359
AciI CCGC 4 cut(s) 6, 244, 392, 719
AclWI GGATC 3 cut(s) 267, 692, 705
AcsI RAATTY 1 cut(s) 864
AcyI GRCGYC 1 cut(s) 608
AfaI GTAC 2 cut(s) 390, 617
AfiI CCNNNNNNNGG 1 cut(s) 285
AflIII ACRYGT 1 cut(s) 415
AgsI TTSAA 3 cut(s) 139, 503, 827
AhdI GACNNNNNGTC 1 cut(s) 607
AjnI CCWGG 3 cut(s) 555, 691, 829
AluBI AGCT 7 cut(s) 76, 142, 153, 303, 353, 569, 660
AluI AGCT 7 cut(s) 76, 142, 153, 303, 353, 569, 660
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 1 cut(s) 554
AlwI GGATC 3 cut(s) 267, 692, 705
AlwNI CAGNNNCTG 1 cut(s) 200
Ama87I CYCGRG 1 cut(s) 847
AoxI GGCC 1 cut(s) 276
ApeKI GCWGC 3 cut(s) 518, 740, 857
ApoI RAATTY 1 cut(s) 864
Asp700I GAANNNNTTC 1 cut(s) 498
AspLEI GCGC 2 cut(s) 740, 777
AspS9I GGNCC 4 cut(s) 324, 601, 627, 788
AsuC2I CCSGG 3 cut(s) 605, 848, 849
AsuHPI GGTGA 3 cut(s) 283, 331, 745
AvaI CYCGRG 1 cut(s) 847
AvaII GGWCC 4 cut(s) 324, 601, 627, 788
BaeGI GKGCMC 1 cut(s) 135
BamHI GGATCC 1 cut(s) 697
BanII GRGCYC 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 815
Bbv12I GWGCWC 1 cut(s) 78
BbvCI CCTCAGC 1 cut(s) 513
BbvI GCAGC 2 cut(s) 505, 727
BccI CCATC 2 cut(s) 60, 376
BciT130I CCWGG 3 cut(s) 557, 693, 831
BcnI CCSGG 3 cut(s) 605, 848, 849
BcoDI GTCTC 1 cut(s) 554
BfaI CTAG 1 cut(s) 714
BfmI CTRYAG 1 cut(s) 564
BfoI RGCGCY 1 cut(s) 741
BglII AGATCT 1 cut(s) 766
BisI GCNGC 4 cut(s) 519, 720, 741, 858
BlsI GCNGC 4 cut(s) 520, 721, 742, 859
Bme1390I CCNGG 6 cut(s) 557, 605, 693, 831, 848, 849
Bme18I GGWCC 4 cut(s) 324, 601, 627, 788
BmeRI GACNNNNNGTC 1 cut(s) 607
BmeT110I CYCGRG 1 cut(s) 847
BmgT120I GGNCC 4 cut(s) 324, 601, 627, 788
BmiI GGNNCC 6 cut(s) 48, 326, 628, 699, 789, 845
BmrFI CCNGG 6 cut(s) 557, 605, 693, 831, 848, 849
BmsI GCATC 3 cut(s) 207, 718, 786
BpiI GAAGAC 1 cut(s) 815
BpmI CTGGAG 1 cut(s) 578
Bpu10I CCTNAGC 1 cut(s) 513
BpuMI CCSGG 3 cut(s) 605, 848, 849
Bsa29I ATCGAT 1 cut(s) 726
BsaHI GRCGYC 1 cut(s) 608
BsaJI CCNNGG 4 cut(s) 692, 701, 839, 847
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 1 cut(s) 285
Bse3DI GCAATG 1 cut(s) 750
BseBI CCWGG 3 cut(s) 557, 693, 831
BseCI ATCGAT 1 cut(s) 726
BseDI CCNNGG 4 cut(s) 692, 701, 839, 847
BseGI GGATG 2 cut(s) 443, 491
BseLI CCNNNNNNNGG 1 cut(s) 285
BseMI GCAATG 1 cut(s) 750
BseMII CTCAG 2 cut(s) 504, 665
BseSI GKGCMC 1 cut(s) 135
BseXI GCAGC 2 cut(s) 505, 727
BshFI GGCC 1 cut(s) 278
BshVI ATCGAT 1 cut(s) 726
BsiHKAI GWGCWC 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 847
BsiSI CCGG 2 cut(s) 604, 848
BslFI GGGAC 4 cut(s) 182, 719, 801, 864
BslI CCNNNNNNNGG 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 554
BsmFI GGGAC 4 cut(s) 182, 719, 801, 864
BsnI GGCC 1 cut(s) 278
BsoBI CYCGRG 1 cut(s) 847
Bsp1286I GDGCHC 2 cut(s) 78, 135
Bsp1407I TGTACA 1 cut(s) 615
Bsp143I GATC 3 cut(s) 259, 697, 766
Bsp19I CCATGG 2 cut(s) 701, 839
BspACI CCGC 4 cut(s) 6, 244, 392, 719
BspANI GGCC 1 cut(s) 278
BspCNI CTCAG 2 cut(s) 505, 666
BspDI ATCGAT 1 cut(s) 726
BspLI GGNNCC 6 cut(s) 48, 326, 628, 699, 789, 845
BspPI GGATC 3 cut(s) 267, 692, 705
BspQI GCTCTTC 2 cut(s) 83, 227
BsrBI CCGCTC 1 cut(s) 719
BsrDI GCAATG 1 cut(s) 750
BsrGI TGTACA 1 cut(s) 615
BssECI CCNNGG 4 cut(s) 692, 701, 839, 847
BssMI GATC 3 cut(s) 259, 697, 766
BssNAI GTATAC 1 cut(s) 360
BssNI GRCGYC 1 cut(s) 608
BssT1I CCWWGG 2 cut(s) 701, 839
Bst1107I GTATAC 1 cut(s) 360
Bst2UI CCWGG 3 cut(s) 557, 693, 831
Bst4CI ACNGT 4 cut(s) 343, 565, 622, 819
Bst6I CTCTTC 2 cut(s) 83, 227
BstACI GRCGYC 1 cut(s) 608
BstAPI GCANNNNNTGC 1 cut(s) 200
BstAUI TGTACA 1 cut(s) 615
BstC8I GCNNGC 1 cut(s) 280
BstDEI CTNAG 2 cut(s) 513, 674
BstDSI CCRYGG 2 cut(s) 701, 839
BstEII GGTNACC 1 cut(s) 751
BstF5I GGATG 2 cut(s) 443, 491
BstH2I RGCGCY 1 cut(s) 741
BstHHI GCGC 2 cut(s) 740, 777
BstKTI GATC 3 cut(s) 262, 700, 769
BstMAI GTCTC 1 cut(s) 554
BstMBI GATC 3 cut(s) 259, 697, 766
BstMWI GCNNNNNNNGC 6 cut(s) 139, 200, 468, 518, 728, 737
BstNI CCWGG 3 cut(s) 557, 693, 831
BstNSI RCATGY 1 cut(s) 419
BstPI GGTNACC 1 cut(s) 751
BstSCI CCNGG 6 cut(s) 555, 603, 691, 829, 846, 847
BstSFI CTRYAG 1 cut(s) 564
BstSLI GKGCMC 1 cut(s) 135
BstV1I GCAGC 2 cut(s) 505, 727
BstV2I GAAGAC 1 cut(s) 815
BstX2I RGATCY 2 cut(s) 697, 766
BstYI RGATCY 2 cut(s) 697, 766
BstZ17I GTATAC 1 cut(s) 360
Bsu15I ATCGAT 1 cut(s) 726
BsuRI GGCC 1 cut(s) 278
BsuTUI ATCGAT 1 cut(s) 726
BtgI CCRYGG 2 cut(s) 701, 839
BtgZI GCGATG 1 cut(s) 532
BtsCI GGATG 2 cut(s) 443, 491
BtsIMutI CAGTG 1 cut(s) 824
Cac8I GCNNGC 1 cut(s) 280
CaiI CAGNNNCTG 1 cut(s) 200
CfoI GCGC 2 cut(s) 740, 777
Cfr13I GGNCC 4 cut(s) 324, 601, 627, 788
Cfr9I CCCGGG 1 cut(s) 847
ClaI ATCGAT 1 cut(s) 726
CseI GACGC 1 cut(s) 597
Csp6I GTAC 2 cut(s) 389, 616
CviAII CATG 7 cut(s) 372, 416, 437, 522, 667, 702, 840
CviQI GTAC 2 cut(s) 389, 616
DdeI CTNAG 2 cut(s) 513, 674
DpnI GATC 3 cut(s) 261, 699, 768
DpnII GATC 3 cut(s) 259, 697, 766
DriI GACNNNNNGTC 1 cut(s) 607
Eam1104I CTCTTC 2 cut(s) 83, 227
Eam1105I GACNNNNNGTC 1 cut(s) 607
EarI CTCTTC 2 cut(s) 83, 227
Ecl136II GAGCTC 1 cut(s) 76
Eco130I CCWWGG 2 cut(s) 701, 839
Eco24I GRGCYC 1 cut(s) 78
Eco32I GATATC 1 cut(s) 241
Eco47I GGWCC 4 cut(s) 324, 601, 627, 788
Eco53kI GAGCTC 1 cut(s) 76
Eco88I CYCGRG 1 cut(s) 847
Eco91I GGTNACC 1 cut(s) 751
EcoICRI GAGCTC 1 cut(s) 76
EcoO109I RGGNCCY 2 cut(s) 627, 788
EcoO65I GGTNACC 1 cut(s) 751
EcoRII CCWGG 3 cut(s) 555, 691, 829
EcoRV GATATC 1 cut(s) 241
EcoT14I CCWWGG 2 cut(s) 701, 839
EcoT38I GRGCYC 1 cut(s) 78
ErhI CCWWGG 2 cut(s) 701, 839
FaeI CATG 7 cut(s) 375, 419, 440, 525, 670, 705, 843
FaqI GGGAC 4 cut(s) 182, 719, 801, 864
FatI CATG 7 cut(s) 371, 415, 436, 521, 666, 701, 839
FblI GTMKAC 1 cut(s) 359
Fnu4HI GCNGC 4 cut(s) 519, 720, 741, 858
FokI GGATG 2 cut(s) 430, 498
FriOI GRGCYC 1 cut(s) 78
Fsp4HI GCNGC 4 cut(s) 519, 720, 741, 858
FspBI CTAG 1 cut(s) 714
GlaI GCGC 2 cut(s) 739, 776
GluI GCNGC 4 cut(s) 519, 720, 741, 858
GsuI CTGGAG 1 cut(s) 578
HaeII RGCGCY 1 cut(s) 741
HaeIII GGCC 1 cut(s) 278
HapII CCGG 2 cut(s) 604, 848
HgaI GACGC 1 cut(s) 597
HhaI GCGC 2 cut(s) 740, 777
Hin1I GRCGYC 1 cut(s) 608
Hin1II CATG 7 cut(s) 375, 419, 440, 525, 670, 705, 843
Hin6I GCGC 2 cut(s) 738, 775
HinP1I GCGC 2 cut(s) 738, 775
HinfI GANTC 2 cut(s) 17, 123
HpaII CCGG 2 cut(s) 604, 848
HphI GGTGA 3 cut(s) 283, 331, 745
Hpy166II GTNNAC 3 cut(s) 360, 601, 618
Hpy188I TCNGA 2 cut(s) 22, 675
Hpy188III TCNNGA 3 cut(s) 229, 491, 806
Hpy8I GTNNAC 3 cut(s) 360, 601, 618
Hpy99I CGWCG 2 cut(s) 131, 230
HpyAV CCTTC 6 cut(s) 95, 109, 145, 226, 250, 268
HpyCH4III ACNGT 4 cut(s) 343, 565, 622, 819
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 3 cut(s) 203, 521, 743
HpyF10VI GCNNNNNNNGC 6 cut(s) 139, 200, 468, 518, 728, 737
HpyF3I CTNAG 2 cut(s) 513, 674
HpySE526I ACGT 1 cut(s) 306
Hsp92I GRCGYC 1 cut(s) 608
Hsp92II CATG 7 cut(s) 375, 419, 440, 525, 670, 705, 843
HspAI GCGC 2 cut(s) 738, 775
Kzo9I GATC 3 cut(s) 259, 697, 766
LguI GCTCTTC 2 cut(s) 83, 227
LmnI GCTCC 3 cut(s) 52, 73, 350
Lsp1109I GCAGC 2 cut(s) 505, 727
LweI GCATC 3 cut(s) 207, 718, 786
MaeI CTAG 1 cut(s) 714
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 2 cut(s) 439, 751
MalI GATC 3 cut(s) 261, 699, 768
MbiI CCGCTC 1 cut(s) 719
MboI GATC 3 cut(s) 259, 697, 766
MboII GAAGA 7 cut(s) 26, 70, 73, 214, 328, 398, 815
MflI RGATCY 2 cut(s) 697, 766
MhlI GDGCHC 2 cut(s) 78, 135
MluCI AATT 7 cut(s) 177, 294, 313, 577, 593, 801, 864
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 2 cut(s) 508, 669
MroXI GAANNNNTTC 1 cut(s) 498
MspI CCGG 2 cut(s) 604, 848
MspR9I CCNGG 6 cut(s) 557, 605, 693, 831, 848, 849
MvaI CCWGG 3 cut(s) 557, 693, 831
MwoI GCNNNNNNNGC 6 cut(s) 139, 200, 468, 518, 728, 737
NciI CCSGG 3 cut(s) 605, 848, 849
NcoI CCATGG 2 cut(s) 701, 839
NdeII GATC 3 cut(s) 259, 697, 766
NlaIII CATG 7 cut(s) 375, 419, 440, 525, 670, 705, 843
NlaIV GGNNCC 6 cut(s) 48, 326, 628, 699, 789, 845
NmuCI GTSAC 2 cut(s) 439, 751
NspI RCATGY 1 cut(s) 419
PciI ACATGT 1 cut(s) 415
PciSI GCTCTTC 2 cut(s) 83, 227
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 2 cut(s) 17, 123
PflMI CCANNNNNTGG 1 cut(s) 285
PkrI GCNGC 4 cut(s) 520, 721, 742, 859
PpuMI RGGWCCY 2 cut(s) 627, 788
PscI ACATGT 1 cut(s) 415
PsiI TTATAA 1 cut(s) 293
Psp124BI GAGCTC 1 cut(s) 78
Psp5II RGGWCCY 2 cut(s) 627, 788
Psp6I CCWGG 3 cut(s) 555, 691, 829
PspEI GGTNACC 1 cut(s) 751
PspGI CCWGG 3 cut(s) 555, 691, 829
PspN4I GGNNCC 6 cut(s) 48, 326, 628, 699, 789, 845
PspPI GGNCC 4 cut(s) 324, 601, 627, 788
PspPPI RGGWCCY 2 cut(s) 627, 788
PstNI CAGNNNCTG 1 cut(s) 200
PsuI RGATCY 2 cut(s) 697, 766
RsaI GTAC 2 cut(s) 390, 617
RsaNI GTAC 2 cut(s) 389, 616
SacI GAGCTC 1 cut(s) 78
SapI GCTCTTC 2 cut(s) 83, 227
SatI GCNGC 4 cut(s) 519, 720, 741, 858
Sau3AI GATC 3 cut(s) 259, 697, 766
Sau96I GGNCC 4 cut(s) 324, 601, 627, 788
ScrFI CCNGG 6 cut(s) 557, 605, 693, 831, 848, 849
SduI GDGCHC 2 cut(s) 78, 135
SfaNI GCATC 3 cut(s) 207, 718, 786
SfcI CTRYAG 1 cut(s) 564
SinI GGWCC 4 cut(s) 324, 601, 627, 788
SmaI CCCGGG 1 cut(s) 849
Sse9I AATT 7 cut(s) 177, 294, 313, 577, 593, 801, 864
SsiI CCGC 4 cut(s) 6, 244, 392, 719
SspI AATATT 1 cut(s) 762
SspMI CTAG 1 cut(s) 714
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 6 cut(s) 555, 603, 691, 829, 846, 847
StyI CCWWGG 2 cut(s) 701, 839
TaaI ACNGT 4 cut(s) 343, 565, 622, 819
TaiI ACGT 1 cut(s) 309
TaqI TCGA 2 cut(s) 32, 726
TasI AATT 7 cut(s) 177, 294, 313, 577, 593, 801, 864
TatI WGTACW 1 cut(s) 615
TauI GCSGC 1 cut(s) 722
TfiI GAWTC 2 cut(s) 17, 123
TscAI CASTG 1 cut(s) 824
TseFI GTSAC 2 cut(s) 439, 751
TseI GCWGC 3 cut(s) 518, 740, 857
Tsp45I GTSAC 2 cut(s) 439, 751
TspDTI ATGAA 3 cut(s) 395, 535, 640
TspGWI ACGGA 1 cut(s) 173
TspMI CCCGGG 1 cut(s) 847
TspRI CASTG 1 cut(s) 824
Van91I CCANNNNNTGG 1 cut(s) 285
VpaK11BI GGWCC 4 cut(s) 324, 601, 627, 788
XapI RAATTY 1 cut(s) 864
XceI RCATGY 1 cut(s) 419
XcmI CCANNNNNNNNNTGG 2 cut(s) 63, 479
XmaI CCCGGG 1 cut(s) 847
XmiI GTMKAC 1 cut(s) 359
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.