Prupe.5G152900_v2.0.a1

Cycloeucalenol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0008396
Physical Location & Seq
Reverse (-)
13780630 .. 13784009
3380 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G152900.3

Sequence Viewer

Length: 870 bp
ATGGGCGGTAAAGAATCAGCTTTCTCTTGTTCGAGTTTATGGTTAGCTCCCAATCCAAGCAAGAGATGGGGGGAGGTCTTTTTCCTTCTCTACACTCCTTTCTGGCTCACTCTCTGCTTGGGAATTGTCGTGCCCTTGAAGCTCTACGAGAGCTTTACGGAATTGGAGTATTTGCTGATTGGATTGGTTTCAGCAGTCCCTGCTTTCTTGTTGCCAATGCTCTTCGTTGGGAAGGCAGATAGCAGCTTGCCTTGGAAGGATCGTTATTGGGTCAAGGCCAGCCTGTGGATAATAATTTTTAGCTATGTTGGGAATTACTTTTGGACCCACTATTTCTTCACAGTTTTGGGAGCTTCGTATACTTTCCCATCATGGAAAATGAACAATGTACCACACACTACCTTCCTTCTTACACATGTTTGCTTCCTATTTTATCATGTCACATCAAACATAACACTTCGCAGACTACGCCATTTTACTGCTGAATTGCCAGAACGAGTTCAATGGGTTACTGAGGCTGCATGGATTTTGGCTCTTTCTTACTTCATAGCATACCTGGAGACTGTAGCTATTTCTAATTTCCCTTACTATCAGTTTGTCGACCGGGCATCTATGTACACAGTTGGGTCCTTGTTTTATGCCATCTACTTCATTGTTAGCTTTCCCATGTTTCTAAGGATTGATGAAAAGCCTGGCAATCCATGGGACTTGCCTAGGGTGGCTATCGATGCTTTGGGTGCTGCAATGTTAGTGACTATAATACTAGATCTGTGGCGCATCTTTCTGGGACCTATTGTTCCAATCCCAGAAACAAAACTGTGTCTTCAACCCGGACTACCATGGTTCCCGGGACATGATGATCAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko00100 ko01100 ko01110 map00100 map01100 map01110
Pfam Domains
Protein Families
No domains found.

Protein Analysis

290

Amino Acids

33.46

Weight (kDa)

6.65

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 285
AccI GTMKAC 2 cut(s) 359, 600
AciI CCGC 1 cut(s) 6
AclWI GGATC 1 cut(s) 267
AfaI GTAC 2 cut(s) 390, 617
AfiI CCNNNNNNNGG 1 cut(s) 285
AflIII ACRYGT 1 cut(s) 415
AgsI TTSAA 3 cut(s) 139, 503, 827
AjnI CCWGG 2 cut(s) 555, 691
AloI GAACNNNNNNTCC 2 cut(s) 780, 812
AluBI AGCT 9 cut(s) 20, 47, 142, 153, 246, 303, 353, 569, 660
AluI AGCT 9 cut(s) 20, 47, 142, 153, 246, 303, 353, 569, 660
Alw26I GTCTC 1 cut(s) 554
AlwI GGATC 1 cut(s) 267
AlwNI CAGNNNCTG 1 cut(s) 200
Ama87I CYCGRG 1 cut(s) 847
AoxI GGCC 1 cut(s) 276
ApeKI GCWGC 3 cut(s) 243, 518, 740
Asp700I GAANNNNTTC 1 cut(s) 498
AspA2I CCTAGG 1 cut(s) 713
AspLEI GCGC 1 cut(s) 777
AspS9I GGNCC 3 cut(s) 324, 627, 788
AsuC2I CCSGG 4 cut(s) 605, 831, 848, 849
AvaI CYCGRG 1 cut(s) 847
AvaII GGWCC 3 cut(s) 324, 627, 788
AvrII CCTAGG 1 cut(s) 713
BaeGI GKGCMC 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 815
BbvI GCAGC 3 cut(s) 255, 505, 727
BccI CCATC 3 cut(s) 60, 376, 650
BciT130I CCWGG 2 cut(s) 557, 693
BclI TGATCA 1 cut(s) 859
BcnI CCSGG 4 cut(s) 605, 831, 848, 849
BcoDI GTCTC 1 cut(s) 554
BfaI CTAG 2 cut(s) 714, 764
BfmI CTRYAG 1 cut(s) 564
BglII AGATCT 1 cut(s) 766
BisI GCNGC 3 cut(s) 244, 519, 741
BlnI CCTAGG 1 cut(s) 713
BlsI GCNGC 3 cut(s) 245, 520, 742
Bme1390I CCNGG 6 cut(s) 557, 605, 693, 831, 848, 849
Bme18I GGWCC 3 cut(s) 324, 627, 788
BmeT110I CYCGRG 1 cut(s) 847
BmgT120I GGNCC 3 cut(s) 324, 627, 788
BmiI GGNNCC 4 cut(s) 326, 628, 789, 845
BmrFI CCNGG 6 cut(s) 557, 605, 693, 831, 848, 849
BmsI GCATC 3 cut(s) 617, 718, 786
BpiI GAAGAC 1 cut(s) 815
BpmI CTGGAG 1 cut(s) 578
BpuMI CCSGG 4 cut(s) 605, 831, 848, 849
Bsa29I ATCGAT 1 cut(s) 726
BsaJI CCNNGG 5 cut(s) 251, 701, 713, 839, 847
Bsc4I CCNNNNNNNGG 1 cut(s) 285
Bse3DI GCAATG 1 cut(s) 750
BseBI CCWGG 2 cut(s) 557, 693
BseCI ATCGAT 1 cut(s) 726
BseDI CCNNGG 5 cut(s) 251, 701, 713, 839, 847
BseLI CCNNNNNNNGG 1 cut(s) 285
BseMI GCAATG 1 cut(s) 750
BseMII CTCAG 1 cut(s) 504
BseSI GKGCMC 1 cut(s) 135
BseXI GCAGC 3 cut(s) 255, 505, 727
Bsh1285I CGRYCG 1 cut(s) 604
BshFI GGCC 1 cut(s) 278
BshVI ATCGAT 1 cut(s) 726
BsiEI CGRYCG 1 cut(s) 604
BsiHKCI CYCGRG 1 cut(s) 847
BsiSI CCGG 3 cut(s) 604, 831, 848
BslFI GGGAC 4 cut(s) 182, 719, 801, 864
BslI CCNNNNNNNGG 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 554
BsmFI GGGAC 4 cut(s) 182, 719, 801, 864
BsnI GGCC 1 cut(s) 278
BsoBI CYCGRG 1 cut(s) 847
Bsp1286I GDGCHC 1 cut(s) 135
Bsp1407I TGTACA 1 cut(s) 615
Bsp143I GATC 3 cut(s) 259, 766, 859
Bsp19I CCATGG 2 cut(s) 701, 839
BspACI CCGC 1 cut(s) 6
BspANI GGCC 1 cut(s) 278
BspCNI CTCAG 1 cut(s) 505
BspDI ATCGAT 1 cut(s) 726
BspLI GGNNCC 4 cut(s) 326, 628, 789, 845
BspPI GGATC 1 cut(s) 267
BspQI GCTCTTC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 750
BsrGI TGTACA 1 cut(s) 615
BssECI CCNNGG 5 cut(s) 251, 701, 713, 839, 847
BssMI GATC 3 cut(s) 259, 766, 859
BssNAI GTATAC 1 cut(s) 360
BssT1I CCWWGG 4 cut(s) 251, 701, 713, 839
Bst1107I GTATAC 1 cut(s) 360
Bst2UI CCWGG 2 cut(s) 557, 693
Bst4CI ACNGT 4 cut(s) 343, 565, 622, 819
Bst6I CTCTTC 1 cut(s) 227
BstAPI GCANNNNNTGC 1 cut(s) 200
BstAUI TGTACA 1 cut(s) 615
BstC8I GCNNGC 2 cut(s) 248, 280
BstDEI CTNAG 2 cut(s) 513, 674
BstDSI CCRYGG 2 cut(s) 701, 839
BstHHI GCGC 1 cut(s) 777
BstKTI GATC 3 cut(s) 262, 769, 862
BstMAI GTCTC 1 cut(s) 554
BstMBI GATC 3 cut(s) 259, 766, 859
BstMCI CGRYCG 1 cut(s) 604
BstMWI GCNNNNNNNGC 5 cut(s) 139, 200, 468, 728, 737
BstNI CCWGG 2 cut(s) 557, 693
BstNSI RCATGY 1 cut(s) 419
BstSCI CCNGG 6 cut(s) 555, 603, 691, 829, 846, 847
BstSFI CTRYAG 1 cut(s) 564
BstSLI GKGCMC 1 cut(s) 135
BstV1I GCAGC 3 cut(s) 255, 505, 727
BstV2I GAAGAC 1 cut(s) 815
BstX2I RGATCY 1 cut(s) 766
BstYI RGATCY 1 cut(s) 766
BstZ17I GTATAC 1 cut(s) 360
Bsu15I ATCGAT 1 cut(s) 726
BsuRI GGCC 1 cut(s) 278
BsuTUI ATCGAT 1 cut(s) 726
BtgI CCRYGG 2 cut(s) 701, 839
Cac8I GCNNGC 2 cut(s) 248, 280
CaiI CAGNNNCTG 1 cut(s) 200
CfoI GCGC 1 cut(s) 777
Cfr13I GGNCC 3 cut(s) 324, 627, 788
Cfr9I CCCGGG 1 cut(s) 847
ClaI ATCGAT 1 cut(s) 726
Csp6I GTAC 2 cut(s) 389, 616
CviAII CATG 8 cut(s) 372, 416, 437, 522, 667, 702, 840, 854
CviQI GTAC 2 cut(s) 389, 616
DdeI CTNAG 2 cut(s) 513, 674
DpnI GATC 3 cut(s) 261, 768, 861
DpnII GATC 3 cut(s) 259, 766, 859
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
Eco130I CCWWGG 4 cut(s) 251, 701, 713, 839
Eco47I GGWCC 3 cut(s) 324, 627, 788
Eco88I CYCGRG 1 cut(s) 847
EcoO109I RGGNCCY 2 cut(s) 627, 788
EcoRII CCWGG 2 cut(s) 555, 691
EcoT14I CCWWGG 4 cut(s) 251, 701, 713, 839
ErhI CCWWGG 4 cut(s) 251, 701, 713, 839
FaeI CATG 8 cut(s) 375, 419, 440, 525, 670, 705, 843, 857
FaqI GGGAC 4 cut(s) 182, 719, 801, 864
FatI CATG 8 cut(s) 371, 415, 436, 521, 666, 701, 839, 853
FbaI TGATCA 1 cut(s) 859
FblI GTMKAC 2 cut(s) 359, 600
Fnu4HI GCNGC 3 cut(s) 244, 519, 741
Fsp4HI GCNGC 3 cut(s) 244, 519, 741
FspBI CTAG 2 cut(s) 714, 764
GlaI GCGC 1 cut(s) 776
GluI GCNGC 3 cut(s) 244, 519, 741
GsuI CTGGAG 1 cut(s) 578
HaeIII GGCC 1 cut(s) 278
HapII CCGG 3 cut(s) 604, 831, 848
HhaI GCGC 1 cut(s) 777
Hin1II CATG 8 cut(s) 375, 419, 440, 525, 670, 705, 843, 857
Hin6I GCGC 1 cut(s) 775
HinP1I GCGC 1 cut(s) 775
HincII GTYRAC 1 cut(s) 601
HindII GTYRAC 1 cut(s) 601
HinfI GANTC 1 cut(s) 14
HpaII CCGG 3 cut(s) 604, 831, 848
Hpy166II GTNNAC 3 cut(s) 360, 601, 618
Hpy8I GTNNAC 3 cut(s) 360, 601, 618
HpyAV CCTTC 5 cut(s) 95, 226, 250, 412, 416
HpyCH4III ACNGT 4 cut(s) 343, 565, 622, 819
HpyCH4V TGCA 2 cut(s) 521, 743
HpyF10VI GCNNNNNNNGC 5 cut(s) 139, 200, 468, 728, 737
HpyF3I CTNAG 2 cut(s) 513, 674
Hsp92II CATG 8 cut(s) 375, 419, 440, 525, 670, 705, 843, 857
HspAI GCGC 1 cut(s) 775
Ksp22I TGATCA 1 cut(s) 859
Kzo9I GATC 3 cut(s) 259, 766, 859
LguI GCTCTTC 1 cut(s) 227
LmnI GCTCC 2 cut(s) 52, 350
Lsp1109I GCAGC 3 cut(s) 255, 505, 727
LweI GCATC 3 cut(s) 617, 718, 786
MaeI CTAG 2 cut(s) 714, 764
MaeIII GTNAC 3 cut(s) 439, 508, 751
MalI GATC 3 cut(s) 261, 768, 861
MboI GATC 3 cut(s) 259, 766, 859
MboII GAAGA 3 cut(s) 214, 328, 815
MflI RGATCY 1 cut(s) 766
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 6 cut(s) 123, 161, 294, 313, 485, 577
MnlI CCTC 2 cut(s) 67, 508
MroXI GAANNNNTTC 1 cut(s) 498
MspI CCGG 3 cut(s) 604, 831, 848
MspR9I CCNGG 6 cut(s) 557, 605, 693, 831, 848, 849
MvaI CCWGG 2 cut(s) 557, 693
MwoI GCNNNNNNNGC 5 cut(s) 139, 200, 468, 728, 737
NciI CCSGG 4 cut(s) 605, 831, 848, 849
NcoI CCATGG 2 cut(s) 701, 839
NdeII GATC 3 cut(s) 259, 766, 859
NlaIII CATG 8 cut(s) 375, 419, 440, 525, 670, 705, 843, 857
NlaIV GGNNCC 4 cut(s) 326, 628, 789, 845
NmuCI GTSAC 2 cut(s) 439, 751
NspI RCATGY 1 cut(s) 419
PciI ACATGT 1 cut(s) 415
PciSI GCTCTTC 1 cut(s) 227
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 1 cut(s) 14
PflMI CCANNNNNTGG 1 cut(s) 285
PkrI GCNGC 3 cut(s) 245, 520, 742
PpuMI RGGWCCY 2 cut(s) 627, 788
PscI ACATGT 1 cut(s) 415
Psp5II RGGWCCY 2 cut(s) 627, 788
Psp6I CCWGG 2 cut(s) 555, 691
PspGI CCWGG 2 cut(s) 555, 691
PspN4I GGNNCC 4 cut(s) 326, 628, 789, 845
PspPI GGNCC 3 cut(s) 324, 627, 788
PspPPI RGGWCCY 2 cut(s) 627, 788
PstNI CAGNNNCTG 1 cut(s) 200
PsuI RGATCY 1 cut(s) 766
RsaI GTAC 2 cut(s) 390, 617
RsaNI GTAC 2 cut(s) 389, 616
SalI GTCGAC 1 cut(s) 599
SapI GCTCTTC 1 cut(s) 227
SatI GCNGC 3 cut(s) 244, 519, 741
Sau3AI GATC 3 cut(s) 259, 766, 859
Sau96I GGNCC 3 cut(s) 324, 627, 788
ScrFI CCNGG 6 cut(s) 557, 605, 693, 831, 848, 849
SduI GDGCHC 1 cut(s) 135
SfaNI GCATC 3 cut(s) 617, 718, 786
SfcI CTRYAG 1 cut(s) 564
SinI GGWCC 3 cut(s) 324, 627, 788
SmaI CCCGGG 1 cut(s) 849
Sse9I AATT 6 cut(s) 123, 161, 294, 313, 485, 577
SsiI CCGC 1 cut(s) 6
SspMI CTAG 2 cut(s) 714, 764
StyD4I CCNGG 6 cut(s) 555, 603, 691, 829, 846, 847
StyI CCWWGG 4 cut(s) 251, 701, 713, 839
TaaI ACNGT 4 cut(s) 343, 565, 622, 819
TaqI TCGA 3 cut(s) 32, 600, 726
TasI AATT 6 cut(s) 123, 161, 294, 313, 485, 577
TatI WGTACW 1 cut(s) 615
TfiI GAWTC 1 cut(s) 14
TseFI GTSAC 2 cut(s) 439, 751
TseI GCWGC 3 cut(s) 243, 518, 740
Tsp45I GTSAC 2 cut(s) 439, 751
TspDTI ATGAA 4 cut(s) 395, 535, 640, 699
TspGWI ACGGA 1 cut(s) 173
TspMI CCCGGG 1 cut(s) 847
Van91I CCANNNNNTGG 1 cut(s) 285
VpaK11BI GGWCC 3 cut(s) 324, 627, 788
XceI RCATGY 1 cut(s) 419
XcmI CCANNNNNNNNNTGG 1 cut(s) 63
XmaI CCCGGG 1 cut(s) 847
XmaJI CCTAGG 1 cut(s) 713
XmiI GTMKAC 2 cut(s) 359, 600
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 2 cut(s) 714, 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.