Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0008396

Physical Location & Seq

Genomic Coordinates Reverse (-)

16222102 .. 16224250

Gene Structure 2149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g13260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGCTCTTCGTCGGGAAGGCAGATAGCAACTTGGCTTGGAAGGATCGTTATTGGGTCAAGGCCAGCGTGTGGATAATAATTTTTAGCTATGTTGGGAATTACTTTTGGACCCACTATTTCTTCACCGTTTTGGGAGCTTCATATACTTTCCCATCATGGAAAATGAACAATGTACCGCACACTACCTTCCTCCTGACACATGTTTGCTTCCTATTTTATCATGTCACCTCAAATATAACACTTCGCAGACTACGCCATTTTACTGCTGAATGGCCAGAACAAGTTCAATGGGTTGCTGAGGCTGCTTGGATTTTGGCTCTTTCTTATTTCATTGCATACCTGGAGACTATAGCTATTTCTAACTTCCCTTACTATCAGTTTGTGGACCGGGCGTCTATGTATACAGTTGGTTCCTTGTTTTATGCGATCTACTTCATCGTTAGCTTTCCCATGTTTCTTAGGATCGATGAGAAGCCTGGCGATCCATGGGACTTGCCTAGAGCGGCCATTGATGCTTTGGGCGCCGCAATGCTGGTGACAATTATACTAGATCTGTGGCGCATCTTTCTGGGACCTATTGTCCCAATTCCAGAAACAAAACAGTGTCTTCAACCTGGACTGCCATGGTTCCCGGGACACGCTGCCCAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

25.3

Weight (kDa)

7.01

Isoelectric Point (pI)

33.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50375 AT5G50375 AT5G50375
fragaria_vesca	FvH4_5g07950 FvH4_5g07950
malus_domestica	MD06G1143700.v1.1 MD14G1159000.v1.1
prunus_persica	Prupe.5G152900_v2.0.a1 Prupe.5G152900_v2.0.a1 Prupe.5G152900_v2.0.a1
pyrus_communis	pycom06g13340 pycom14g13260
rosa_chinensis	RchiOBHm_Chr7g0190451
rosa_laevigata	RLG00000004531
rosa_multiflora	Rmu_sc0002614.1_g000002
rosa_roxburghii	Rroxscaffold_3G00264610
rosa_rugosa	Rorug06G0504700
rosa_samantha	Rh7AG110700 Rh7BG113300 Rh7CG115500 Rh7DG113800
rosa_wichuraiana	Rw0G019870 Rw7G009610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	521
AccB7I	CCANNNNNTGG	1 cut(s)	69
AccBSI	CCGCTC	1 cut(s)	503
AccI	GTMKAC	1 cut(s)	401
AciI	CCGC	3 cut(s)	176, 503, 525
AclWI	GGATC	3 cut(s)	51, 470, 476
AcoI	YGGCCR	2 cut(s)	272, 504
AcsI	RAATTY	1 cut(s)	648
AcyI	GRCGYC	2 cut(s)	392, 522
AfaI	GTAC	1 cut(s)	174
AfiI	CCNNNNNNNGG	1 cut(s)	69
AflIII	ACRYGT	1 cut(s)	199
AgsI	TTSAA	2 cut(s)	287, 611
AhdI	GACNNNNNGTC	2 cut(s)	391, 578
AjnI	CCWGG	3 cut(s)	339, 475, 613
AluBI	AGCT	4 cut(s)	87, 137, 353, 444
AluI	AGCT	4 cut(s)	87, 137, 353, 444
Alw26I	GTCTC	1 cut(s)	338
AlwI	GGATC	3 cut(s)	51, 470, 476
Ama87I	CYCGRG	1 cut(s)	631
AoxI	GGCC	3 cut(s)	60, 272, 504
ApeKI	GCWGC	2 cut(s)	302, 641
ApoI	RAATTY	1 cut(s)	648
Asp700I	GAANNNNTTC	1 cut(s)	282
AspLEI	GCGC	2 cut(s)	524, 561
AspS9I	GGNCC	3 cut(s)	108, 385, 572
AsuC2I	CCSGG	3 cut(s)	389, 632, 633
AsuHPI	GGTGA	3 cut(s)	115, 217, 547
AvaI	CYCGRG	1 cut(s)	631
AvaII	GGWCC	3 cut(s)	108, 385, 572
BalI	TGGCCA	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	521
BbsI	GAAGAC	1 cut(s)	599
BbvCI	CCTCAGC	1 cut(s)	297
BbvI	GCAGC	2 cut(s)	289, 628
BccI	CCATC	1 cut(s)	160
BciT130I	CCWGG	3 cut(s)	341, 477, 615
BcnI	CCSGG	3 cut(s)	389, 632, 633
BcoDI	GTCTC	1 cut(s)	338
BfaI	CTAG	2 cut(s)	498, 548
BfmI	CTRYAG	1 cut(s)	348
BfoI	RGCGCY	1 cut(s)	525
BglII	AGATCT	1 cut(s)	550
BisI	GCNGC	4 cut(s)	303, 504, 525, 642
BlsI	GCNGC	4 cut(s)	304, 505, 526, 643
Bme1390I	CCNGG	6 cut(s)	341, 389, 477, 615, 632, 633
Bme18I	GGWCC	3 cut(s)	108, 385, 572
BmeRI	GACNNNNNGTC	2 cut(s)	391, 578
BmeT110I	CYCGRG	1 cut(s)	631
BmgT120I	GGNCC	3 cut(s)	108, 385, 572
BmiI	GGNNCC	5 cut(s)	110, 412, 523, 573, 629
BmrFI	CCNGG	6 cut(s)	341, 389, 477, 615, 632, 633
BmsI	GCATC	2 cut(s)	502, 570
BpiI	GAAGAC	1 cut(s)	599
BpmI	CTGGAG	1 cut(s)	362
Bpu10I	CCTNAGC	1 cut(s)	297
BpuMI	CCSGG	3 cut(s)	389, 632, 633
Bsa29I	ATCGAT	1 cut(s)	465
BsaHI	GRCGYC	2 cut(s)	392, 522
BsaJI	CCNNGG	3 cut(s)	485, 623, 631
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse3DI	GCAATG	2 cut(s)	330, 534
BseBI	CCWGG	3 cut(s)	341, 477, 615
BseCI	ATCGAT	1 cut(s)	465
BseDI	CCNNGG	3 cut(s)	485, 623, 631
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMI	GCAATG	2 cut(s)	330, 534
BseMII	CTCAG	1 cut(s)	288
BseXI	GCAGC	2 cut(s)	289, 628
BshFI	GGCC	3 cut(s)	62, 274, 506
BshNI	GGYRCC	1 cut(s)	521
BshVI	ATCGAT	1 cut(s)	465
BsiHKCI	CYCGRG	1 cut(s)	631
BsiSI	CCGG	2 cut(s)	388, 632
BslFI	GGGAC	4 cut(s)	503, 566, 585, 648
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	338
BsmFI	GGGAC	4 cut(s)	503, 566, 585, 648
BsnI	GGCC	3 cut(s)	62, 274, 506
BsoBI	CYCGRG	1 cut(s)	631
Bsp143I	GATC	5 cut(s)	43, 426, 462, 481, 550
Bsp19I	CCATGG	2 cut(s)	485, 623
BspACI	CCGC	3 cut(s)	176, 503, 525
BspANI	GGCC	3 cut(s)	62, 274, 506
BspCNI	CTCAG	1 cut(s)	289
BspDI	ATCGAT	1 cut(s)	465
BspLI	GGNNCC	5 cut(s)	110, 412, 523, 573, 629
BspPI	GGATC	3 cut(s)	51, 470, 476
BspQI	GCTCTTC	1 cut(s)	11
BspT107I	GGYRCC	1 cut(s)	521
BsrBI	CCGCTC	1 cut(s)	503
BsrDI	GCAATG	2 cut(s)	330, 534
BssECI	CCNNGG	3 cut(s)	485, 623, 631
BssMI	GATC	5 cut(s)	43, 426, 462, 481, 550
BssNAI	GTATAC	1 cut(s)	402
BssNI	GRCGYC	2 cut(s)	392, 522
BssT1I	CCWWGG	2 cut(s)	485, 623
Bst1107I	GTATAC	1 cut(s)	402
Bst2UI	CCWGG	3 cut(s)	341, 477, 615
Bst4CI	ACNGT	3 cut(s)	127, 406, 603
Bst6I	CTCTTC	1 cut(s)	11
BstACI	GRCGYC	2 cut(s)	392, 522
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	2 cut(s)	297, 458
BstDSI	CCRYGG	2 cut(s)	485, 623
BstH2I	RGCGCY	1 cut(s)	525
BstHHI	GCGC	2 cut(s)	524, 561
BstKTI	GATC	5 cut(s)	46, 429, 465, 484, 553
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	5 cut(s)	43, 426, 462, 481, 550
BstMWI	GCNNNNNNNGC	4 cut(s)	252, 302, 512, 521
BstNI	CCWGG	3 cut(s)	341, 477, 615
BstNSI	RCATGY	1 cut(s)	203
BstSCI	CCNGG	6 cut(s)	339, 387, 475, 613, 630, 631
BstSFI	CTRYAG	1 cut(s)	348
BstV1I	GCAGC	2 cut(s)	289, 628
BstV2I	GAAGAC	1 cut(s)	599
BstX2I	RGATCY	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	550
BstZ17I	GTATAC	1 cut(s)	402
Bsu15I	ATCGAT	1 cut(s)	465
BsuRI	GGCC	3 cut(s)	62, 274, 506
BsuTUI	ATCGAT	1 cut(s)	465
BtgI	CCRYGG	2 cut(s)	485, 623
BtsIMutI	CAGTG	1 cut(s)	608
Cac8I	GCNNGC	1 cut(s)	64
CfoI	GCGC	2 cut(s)	524, 561
Cfr13I	GGNCC	3 cut(s)	108, 385, 572
Cfr9I	CCCGGG	1 cut(s)	631
ClaI	ATCGAT	1 cut(s)	465
CseI	GACGC	1 cut(s)	381
Csp6I	GTAC	1 cut(s)	173
CviAII	CATG	6 cut(s)	156, 200, 221, 451, 486, 624
CviQI	GTAC	1 cut(s)	173
DdeI	CTNAG	2 cut(s)	297, 458
DinI	GGCGCC	1 cut(s)	523
DpnI	GATC	5 cut(s)	45, 428, 464, 483, 552
DpnII	GATC	5 cut(s)	43, 426, 462, 481, 550
DriI	GACNNNNNGTC	2 cut(s)	391, 578
EaeI	YGGCCR	2 cut(s)	272, 504
Eam1104I	CTCTTC	1 cut(s)	11
Eam1105I	GACNNNNNGTC	2 cut(s)	391, 578
EarI	CTCTTC	1 cut(s)	11
Eco130I	CCWWGG	2 cut(s)	485, 623
Eco47I	GGWCC	3 cut(s)	108, 385, 572
Eco88I	CYCGRG	1 cut(s)	631
EcoO109I	RGGNCCY	1 cut(s)	572
EcoRII	CCWGG	3 cut(s)	339, 475, 613
EcoT14I	CCWWGG	2 cut(s)	485, 623
EgeI	GGCGCC	1 cut(s)	523
EheI	GGCGCC	1 cut(s)	523
ErhI	CCWWGG	2 cut(s)	485, 623
FaeI	CATG	6 cut(s)	159, 203, 224, 454, 489, 627
FaqI	GGGAC	4 cut(s)	503, 566, 585, 648
FatI	CATG	6 cut(s)	155, 199, 220, 450, 485, 623
FblI	GTMKAC	1 cut(s)	401
Fnu4HI	GCNGC	4 cut(s)	303, 504, 525, 642
Fsp4HI	GCNGC	4 cut(s)	303, 504, 525, 642
FspBI	CTAG	2 cut(s)	498, 548
GlaI	GCGC	2 cut(s)	523, 560
GluI	GCNGC	4 cut(s)	303, 504, 525, 642
GsuI	CTGGAG	1 cut(s)	362
HaeII	RGCGCY	1 cut(s)	525
HaeIII	GGCC	3 cut(s)	62, 274, 506
HapII	CCGG	2 cut(s)	388, 632
HgaI	GACGC	1 cut(s)	381
HhaI	GCGC	2 cut(s)	524, 561
Hin1I	GRCGYC	2 cut(s)	392, 522
Hin1II	CATG	6 cut(s)	159, 203, 224, 454, 489, 627
Hin6I	GCGC	2 cut(s)	522, 559
HinP1I	GCGC	2 cut(s)	522, 559
HpaII	CCGG	2 cut(s)	388, 632
HphI	GGTGA	3 cut(s)	115, 217, 547
Hpy166II	GTNNAC	2 cut(s)	385, 402
Hpy188III	TCNNGA	3 cut(s)	13, 193, 590
Hpy8I	GTNNAC	2 cut(s)	385, 402
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	3 cut(s)	10, 34, 196
HpyCH4III	ACNGT	3 cut(s)	127, 406, 603
HpyCH4V	TGCA	1 cut(s)	335
HpyF10VI	GCNNNNNNNGC	4 cut(s)	252, 302, 512, 521
HpyF3I	CTNAG	2 cut(s)	297, 458
Hsp92I	GRCGYC	2 cut(s)	392, 522
Hsp92II	CATG	6 cut(s)	159, 203, 224, 454, 489, 627
HspAI	GCGC	2 cut(s)	522, 559
KasI	GGCGCC	1 cut(s)	521
Kzo9I	GATC	5 cut(s)	43, 426, 462, 481, 550
LguI	GCTCTTC	1 cut(s)	11
LmnI	GCTCC	1 cut(s)	134
Lsp1109I	GCAGC	2 cut(s)	289, 628
LweI	GCATC	2 cut(s)	502, 570
MaeI	CTAG	2 cut(s)	498, 548
MaeIII	GTNAC	2 cut(s)	223, 535
MalI	GATC	5 cut(s)	45, 428, 464, 483, 552
MbiI	CCGCTC	1 cut(s)	503
MboI	GATC	5 cut(s)	43, 426, 462, 481, 550
MboII	GAAGA	2 cut(s)	112, 599
MflI	RGATCY	1 cut(s)	550
MlsI	TGGCCA	1 cut(s)	274
MluCI	AATT	5 cut(s)	78, 97, 540, 585, 648
MluNI	TGGCCA	1 cut(s)	274
Mly113I	GGCGCC	1 cut(s)	522
MnlI	CCTC	3 cut(s)	200, 238, 292
Mox20I	TGGCCA	1 cut(s)	274
MroXI	GAANNNNTTC	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	274
Msp20I	TGGCCA	1 cut(s)	274
MspI	CCGG	2 cut(s)	388, 632
MspR9I	CCNGG	6 cut(s)	341, 389, 477, 615, 632, 633
MvaI	CCWGG	3 cut(s)	341, 477, 615
MwoI	GCNNNNNNNGC	4 cut(s)	252, 302, 512, 521
NarI	GGCGCC	1 cut(s)	522
NciI	CCSGG	3 cut(s)	389, 632, 633
NcoI	CCATGG	2 cut(s)	485, 623
NdeII	GATC	5 cut(s)	43, 426, 462, 481, 550
NlaIII	CATG	6 cut(s)	159, 203, 224, 454, 489, 627
NlaIV	GGNNCC	5 cut(s)	110, 412, 523, 573, 629
NmuCI	GTSAC	2 cut(s)	223, 535
NspI	RCATGY	1 cut(s)	203
PciI	ACATGT	1 cut(s)	199
PciSI	GCTCTTC	1 cut(s)	11
PdmI	GAANNNNTTC	1 cut(s)	282
PflMI	CCANNNNNTGG	1 cut(s)	69
PkrI	GCNGC	4 cut(s)	304, 505, 526, 643
PluTI	GGCGCC	1 cut(s)	525
PpuMI	RGGWCCY	1 cut(s)	572
PscI	ACATGT	1 cut(s)	199
Psp5II	RGGWCCY	1 cut(s)	572
Psp6I	CCWGG	3 cut(s)	339, 475, 613
PspGI	CCWGG	3 cut(s)	339, 475, 613
PspN4I	GGNNCC	5 cut(s)	110, 412, 523, 573, 629
PspPI	GGNCC	3 cut(s)	108, 385, 572
PspPPI	RGGWCCY	1 cut(s)	572
PsuI	RGATCY	1 cut(s)	550
RsaI	GTAC	1 cut(s)	174
RsaNI	GTAC	1 cut(s)	173
SapI	GCTCTTC	1 cut(s)	11
SatI	GCNGC	4 cut(s)	303, 504, 525, 642
Sau3AI	GATC	5 cut(s)	43, 426, 462, 481, 550
Sau96I	GGNCC	3 cut(s)	108, 385, 572
ScrFI	CCNGG	6 cut(s)	341, 389, 477, 615, 632, 633
SetI	ASST	9 cut(s)	89, 139, 188, 230, 342, 355, 446, 577, 616
SfaNI	GCATC	2 cut(s)	502, 570
SfcI	CTRYAG	1 cut(s)	348
SfoI	GGCGCC	1 cut(s)	523
SinI	GGWCC	3 cut(s)	108, 385, 572
SmaI	CCCGGG	1 cut(s)	633
Sse9I	AATT	5 cut(s)	78, 97, 540, 585, 648
SsiI	CCGC	3 cut(s)	176, 503, 525
SspDI	GGCGCC	1 cut(s)	521
SspMI	CTAG	2 cut(s)	498, 548
StyD4I	CCNGG	6 cut(s)	339, 387, 475, 613, 630, 631
StyI	CCWWGG	2 cut(s)	485, 623
TaaI	ACNGT	3 cut(s)	127, 406, 603
TaqI	TCGA	1 cut(s)	465
TasI	AATT	5 cut(s)	78, 97, 540, 585, 648
TauI	GCSGC	2 cut(s)	506, 527
TscAI	CASTG	1 cut(s)	608
TseFI	GTSAC	2 cut(s)	223, 535
TseI	GCWGC	2 cut(s)	302, 641
Tsp45I	GTSAC	2 cut(s)	223, 535
TspDTI	ATGAA	4 cut(s)	129, 179, 319, 424
TspMI	CCCGGG	1 cut(s)	631
TspRI	CASTG	1 cut(s)	608
Van91I	CCANNNNNTGG	1 cut(s)	69
VpaK11BI	GGWCC	3 cut(s)	108, 385, 572
XapI	RAATTY	1 cut(s)	648
XceI	RCATGY	1 cut(s)	203
XcmI	CCANNNNNNNNNTGG	1 cut(s)	514
XmaI	CCCGGG	1 cut(s)	631
XmiI	GTMKAC	1 cut(s)	401
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	2 cut(s)	498, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.