Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008396

Physical Location & Seq

Genomic Coordinates Reverse (-)

8902167 .. 8905651

Gene Structure 3485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG115500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGGTGGTAAAAAGGAATCTTCTTCTTCTTCTCCGAGTTTATGGCTGGCTTCCAATCCAAGCAAGCGATGGGGGGAGCTCTTCTTTCTCTTCTACACTCCTTTCTGGCTCACTCTCTGCCTCGGAATCGTCGTCCCCTACAAGCTCTACGAGAGGTTTACGGAATGGGAGTATTTGCTAATTGGATTGGTCTCGGCTGTTCCTTCGTTTTTGTTACCCATGTTATTCGTTGGAAAGGCAGATAGAAGCTTGTGTTGGAAGGATCGGTATTGGGTCAAGGCCAGTGTGTGGACAATACTTTTTAGCTATGTTGGGAATTACTTTTGGACCCACTATTTCTTCACGGTTTTGGGAGCTTCGTATACTTTCCCGTCATGGAAAATGAACAATGTACCACATACTACCTTCCTTCTTACACATGTTTGCTTCCTATTTTATCATGTCGGATCAAACATGACGCTTCGCAGACTACGCCATTCTATTGCTGACATGCCAAAACAAGTTCAATTGCTTTTTGAGGCTGCATGGATATTGGCTTTTGCTTATTTCATAGCATACCTGGAGACTGTAGCTATTTCCAACGTATGTGATAACATTCATCAACACTTTTTATCACTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

24.2

Weight (kDa)

9.02

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50375 AT5G50375 AT5G50375
fragaria_vesca	FvH4_5g07950 FvH4_5g07950
malus_domestica	MD06G1143700.v1.1 MD14G1159000.v1.1
prunus_persica	Prupe.5G152900_v2.0.a1 Prupe.5G152900_v2.0.a1 Prupe.5G152900_v2.0.a1
pyrus_communis	pycom06g13340 pycom14g13260
rosa_chinensis	RchiOBHm_Chr7g0190451
rosa_laevigata	RLG00000004531
rosa_multiflora	Rmu_sc0002614.1_g000002
rosa_roxburghii	Rroxscaffold_3G00264610
rosa_rugosa	Rorug06G0504700
rosa_samantha	Rh7AG110700 Rh7BG113300 Rh7CG115500 Rh7DG113800
rosa_wichuraiana	Rw0G019870 Rw7G009610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	288
AccI	GTMKAC	1 cut(s)	362
AclWI	GGATC	2 cut(s)	270, 454
AfaI	GTAC	1 cut(s)	393
AfiI	CCNNNNNNNGG	1 cut(s)	288
AflIII	ACRYGT	1 cut(s)	418
AgsI	TTSAA	1 cut(s)	506
AjnI	CCWGG	1 cut(s)	558
AjuI	GAANNNNNNNTTGG	2 cut(s)	238, 270
AluBI	AGCT	6 cut(s)	79, 145, 249, 306, 356, 572
AluI	AGCT	6 cut(s)	79, 145, 249, 306, 356, 572
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	2 cut(s)	196, 557
AlwI	GGATC	2 cut(s)	270, 454
AoxI	GGCC	1 cut(s)	279
ApeKI	GCWGC	1 cut(s)	521
AspS9I	GGNCC	1 cut(s)	327
AvaII	GGWCC	1 cut(s)	327
BanII	GRGCYC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	508
BccI	CCATC	1 cut(s)	63
BciT130I	CCWGG	1 cut(s)	560
BcoDI	GTCTC	2 cut(s)	196, 557
BfmI	CTRYAG	1 cut(s)	567
BisI	GCNGC	1 cut(s)	522
BlsI	GCNGC	1 cut(s)	523
Bme1390I	CCNGG	1 cut(s)	560
Bme18I	GGWCC	1 cut(s)	327
BmgT120I	GGNCC	1 cut(s)	327
BmiI	GGNNCC	1 cut(s)	329
BmrFI	CCNGG	1 cut(s)	560
BpmI	CTGGAG	1 cut(s)	581
BsaI	GGTCTC	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	1 cut(s)	288
Bse1I	ACTGG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	560
BseDI	CCNNGG	1 cut(s)	121
BseLI	CCNNNNNNNGG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	282
BseXI	GCAGC	1 cut(s)	508
BshFI	GGCC	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	288
BsmAI	GTCTC	2 cut(s)	196, 557
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	281
Bso31I	GGTCTC	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	262, 446
BspANI	GGCC	1 cut(s)	281
BspLI	GGNNCC	1 cut(s)	329
BspPI	GGATC	2 cut(s)	270, 454
BspQI	GCTCTTC	1 cut(s)	86
BspTNI	GGTCTC	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	2 cut(s)	262, 446
BssNAI	GTATAC	1 cut(s)	363
Bst1107I	GTATAC	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	560
Bst4CI	ACNGT	2 cut(s)	346, 568
Bst6I	CTCTTC	2 cut(s)	86, 95
BstC8I	GCNNGC	2 cut(s)	48, 65
BstKTI	GATC	2 cut(s)	265, 449
BstMAI	GTCTC	2 cut(s)	196, 557
BstMBI	GATC	2 cut(s)	262, 446
BstMWI	GCNNNNNNNGC	1 cut(s)	471
BstNI	CCWGG	1 cut(s)	560
BstNSI	RCATGY	2 cut(s)	422, 493
BstSCI	CCNGG	1 cut(s)	558
BstSFI	CTRYAG	1 cut(s)	567
BstV1I	GCAGC	1 cut(s)	508
BstZ17I	GTATAC	1 cut(s)	363
BsuRI	GGCC	1 cut(s)	281
BtgZI	GCGATG	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	289
Cac8I	GCNNGC	2 cut(s)	48, 65
Cfr13I	GGNCC	1 cut(s)	327
CseI	GACGC	1 cut(s)	466
Csp6I	GTAC	1 cut(s)	392
CviAII	CATG	7 cut(s)	220, 375, 419, 440, 454, 490, 525
CviQI	GTAC	1 cut(s)	392
DpnI	GATC	2 cut(s)	264, 448
DpnII	GATC	2 cut(s)	262, 446
Eam1104I	CTCTTC	2 cut(s)	86, 95
EarI	CTCTTC	2 cut(s)	86, 95
Ecl136II	GAGCTC	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	327
Eco53kI	GAGCTC	1 cut(s)	79
EcoICRI	GAGCTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	558
EcoT38I	GRGCYC	1 cut(s)	81
FaeI	CATG	7 cut(s)	223, 378, 422, 443, 457, 493, 528
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	7 cut(s)	219, 374, 418, 439, 453, 489, 524
FblI	GTMKAC	1 cut(s)	362
Fnu4HI	GCNGC	1 cut(s)	522
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	522
GluI	GCNGC	1 cut(s)	522
GsuI	CTGGAG	1 cut(s)	581
HaeIII	GGCC	1 cut(s)	281
HgaI	GACGC	1 cut(s)	466
Hin1II	CATG	7 cut(s)	223, 378, 422, 443, 457, 493, 528
HindIII	AAGCTT	1 cut(s)	247
HinfI	GANTC	2 cut(s)	17, 126
Hpy166II	GTNNAC	3 cut(s)	159, 291, 363
Hpy188I	TCNGA	3 cut(s)	36, 125, 446
Hpy8I	GTNNAC	3 cut(s)	159, 291, 363
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	4 cut(s)	213, 253, 415, 419
HpyCH4III	ACNGT	2 cut(s)	346, 568
HpyCH4IV	ACGT	1 cut(s)	582
HpyCH4V	TGCA	1 cut(s)	524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	471
HpySE526I	ACGT	1 cut(s)	582
Hsp92II	CATG	7 cut(s)	223, 378, 422, 443, 457, 493, 528
Kzo9I	GATC	2 cut(s)	262, 446
LguI	GCTCTTC	1 cut(s)	86
LmnI	GCTCC	2 cut(s)	76, 353
LpnPI	CCDG	5 cut(s)	32, 91, 295, 545, 572
Lsp1109I	GCAGC	1 cut(s)	508
MaeII	ACGT	1 cut(s)	582
MaeIII	GTNAC	1 cut(s)	213
MalI	GATC	2 cut(s)	264, 448
MboI	GATC	2 cut(s)	262, 446
MboII	GAAGA	7 cut(s)	12, 15, 18, 21, 73, 82, 331
MfeI	CAATTG	1 cut(s)	506
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	3 cut(s)	180, 316, 506
MmeI	TCCRAC	4 cut(s)	211, 236, 424, 603
MnlI	CCTC	3 cut(s)	131, 147, 511
MspR9I	CCNGG	1 cut(s)	560
MunI	CAATTG	1 cut(s)	506
MvaI	CCWGG	1 cut(s)	560
MwoI	GCNNNNNNNGC	1 cut(s)	471
NdeII	GATC	2 cut(s)	262, 446
NlaIII	CATG	7 cut(s)	223, 378, 422, 443, 457, 493, 528
NlaIV	GGNNCC	1 cut(s)	329
NmeAIII	GCCGAG	1 cut(s)	173
NspI	RCATGY	2 cut(s)	422, 493
PciI	ACATGT	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	17, 126
PflMI	CCANNNNNTGG	1 cut(s)	288
PkrI	GCNGC	1 cut(s)	523
PscI	ACATGT	1 cut(s)	418
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	558
PspGI	CCWGG	1 cut(s)	558
PspN4I	GGNNCC	1 cut(s)	329
PspPI	GGNCC	1 cut(s)	327
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
SacI	GAGCTC	1 cut(s)	81
SapI	GCTCTTC	1 cut(s)	86
SatI	GCNGC	1 cut(s)	522
Sau3AI	GATC	2 cut(s)	262, 446
Sau96I	GGNCC	1 cut(s)	327
ScrFI	CCNGG	1 cut(s)	560
SduI	GDGCHC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	567
SinI	GGWCC	1 cut(s)	327
Sse9I	AATT	3 cut(s)	180, 316, 506
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	558
TaaI	ACNGT	2 cut(s)	346, 568
TaiI	ACGT	1 cut(s)	585
TasI	AATT	3 cut(s)	180, 316, 506
TfiI	GAWTC	2 cut(s)	17, 126
TscAI	CASTG	1 cut(s)	289
TseI	GCWGC	1 cut(s)	521
TspDTI	ATGAA	3 cut(s)	398, 538, 587
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	1 cut(s)	289
Van91I	CCANNNNNTGG	1 cut(s)	288
VpaK11BI	GGWCC	1 cut(s)	327
XceI	RCATGY	2 cut(s)	422, 493
XcmI	CCANNNNNNNNNTGG	1 cut(s)	66
XmiI	GTMKAC	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.