Rw0G019870

Cycloeucalenol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00893
OG0008396
Physical Location & Seq
Reverse (-)
28605 .. 28977
373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G019870.1

Sequence Viewer

Length: 258 bp
ATGTACAAAGTTGGGTGCTTGTTTTATGCCATCTACTTCATTGTTAGCTTTCCCATGTTTCTTAGGATTGACGAGAAACCTGGTGATGCATGGGACTTGCCAAGAGCCGCCATTGATGCTCTGGGTGCTGCAATGCTGGTGACGATAATACTAGATCTATGGCGTATATTTCTGGGACCTATTGTTTCAATTCCAGAAACTAAACAGTGCATTCAACCCGGACTACCATGGTTCCCTGGACATGACAACTTGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko00100 ko01100 ko01110 map00100 map01100 map01110
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.61

Weight (kDa)

4.99

Isoelectric Point (pI)

34.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 108
AfaI GTAC 1 cut(s) 5
AgsI TTSAA 2 cut(s) 189, 215
AjnI CCWGG 2 cut(s) 79, 235
AluBI AGCT 1 cut(s) 48
AluI AGCT 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 176
AsuC2I CCSGG 1 cut(s) 219
AsuHPI GGTGA 2 cut(s) 95, 151
AvaII GGWCC 1 cut(s) 176
BbvI GCAGC 1 cut(s) 115
BccI CCATC 1 cut(s) 38
BciT130I CCWGG 2 cut(s) 81, 237
BcnI CCSGG 1 cut(s) 219
BfaI CTAG 1 cut(s) 152
BglII AGATCT 1 cut(s) 154
BisI GCNGC 2 cut(s) 108, 129
BlsI GCNGC 2 cut(s) 109, 130
Bme1390I CCNGG 3 cut(s) 81, 219, 237
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 2 cut(s) 177, 233
BmrFI CCNGG 3 cut(s) 81, 219, 237
BmsI GCATC 2 cut(s) 76, 106
BpuMI CCSGG 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 227, 235
Bse3DI GCAATG 1 cut(s) 138
BseBI CCWGG 2 cut(s) 81, 237
BseDI CCNNGG 2 cut(s) 227, 235
BseMI GCAATG 1 cut(s) 138
BseXI GCAGC 1 cut(s) 115
BsiSI CCGG 1 cut(s) 219
BslFI GGGAC 2 cut(s) 107, 189
BsmFI GGGAC 2 cut(s) 107, 189
BsmI GAATGC 1 cut(s) 210
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 154
Bsp19I CCATGG 1 cut(s) 227
BspACI CCGC 1 cut(s) 108
BspLI GGNNCC 2 cut(s) 177, 233
BsrDI GCAATG 1 cut(s) 138
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 2 cut(s) 227, 235
BssMI GATC 1 cut(s) 154
BssT1I CCWWGG 1 cut(s) 227
Bst2UI CCWGG 2 cut(s) 81, 237
Bst4CI ACNGT 1 cut(s) 207
BstAUI TGTACA 1 cut(s) 3
BstDEI CTNAG 1 cut(s) 62
BstDSI CCRYGG 1 cut(s) 227
BstKTI GATC 1 cut(s) 157
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 2 cut(s) 116, 125
BstNI CCWGG 2 cut(s) 81, 237
BstSCI CCNGG 3 cut(s) 79, 217, 235
BstV1I GCAGC 1 cut(s) 115
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BtgI CCRYGG 1 cut(s) 227
BtsIMutI CAGTG 1 cut(s) 212
Cfr13I GGNCC 1 cut(s) 176
CsiI ACCWGGT 1 cut(s) 79
Csp6I GTAC 1 cut(s) 4
CviAII CATG 4 cut(s) 55, 90, 228, 242
CviJI RGCY 2 cut(s) 48, 107
CviKI_1 RGCY 2 cut(s) 48, 107
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 62
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 227
Eco47I GGWCC 1 cut(s) 176
EcoO109I RGGNCCY 1 cut(s) 176
EcoRII CCWGG 2 cut(s) 79, 235
EcoT14I CCWWGG 1 cut(s) 227
EcoT22I ATGCAT 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 227
FaeI CATG 4 cut(s) 58, 93, 231, 245
FaiI YATR 7 cut(s) 27, 56, 91, 160, 167, 229, 243
FaqI GGGAC 2 cut(s) 107, 189
FatI CATG 4 cut(s) 54, 89, 227, 241
Fnu4HI GCNGC 2 cut(s) 108, 129
Fsp4HI GCNGC 2 cut(s) 108, 129
FspBI CTAG 1 cut(s) 152
GluI GCNGC 2 cut(s) 108, 129
HapII CCGG 1 cut(s) 219
Hin1II CATG 4 cut(s) 58, 93, 231, 245
HpaII CCGG 1 cut(s) 219
HphI GGTGA 2 cut(s) 95, 151
Hpy188III TCNNGA 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4V TGCA 3 cut(s) 89, 131, 210
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 125
HpyF3I CTNAG 1 cut(s) 62
Hsp92II CATG 4 cut(s) 58, 93, 231, 245
Kzo9I GATC 1 cut(s) 154
LpnPI CCDG 9 cut(s) 66, 93, 107, 122, 158, 207, 222, 232, 249
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 2 cut(s) 76, 106
MabI ACCWGGT 1 cut(s) 79
MaeI CTAG 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 139
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MflI RGATCY 1 cut(s) 154
MluCI AATT 1 cut(s) 189
Mph1103I ATGCAT 1 cut(s) 91
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 3 cut(s) 81, 219, 237
Mva1269I GAATGC 1 cut(s) 210
MvaI CCWGG 2 cut(s) 81, 237
MwoI GCNNNNNNNGC 2 cut(s) 116, 125
NciI CCSGG 1 cut(s) 219
NcoI CCATGG 1 cut(s) 227
NdeII GATC 1 cut(s) 154
NlaIII CATG 4 cut(s) 58, 93, 231, 245
NlaIV GGNNCC 2 cut(s) 177, 233
NmuCI GTSAC 1 cut(s) 139
NsiI ATGCAT 1 cut(s) 91
PctI GAATGC 1 cut(s) 210
PkrI GCNGC 2 cut(s) 109, 130
PpuMI RGGWCCY 1 cut(s) 176
Psp5II RGGWCCY 1 cut(s) 176
Psp6I CCWGG 2 cut(s) 79, 235
PspGI CCWGG 2 cut(s) 79, 235
PspN4I GGNNCC 2 cut(s) 177, 233
PspPI GGNCC 1 cut(s) 176
PspPPI RGGWCCY 1 cut(s) 176
PsuI RGATCY 1 cut(s) 154
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SatI GCNGC 2 cut(s) 108, 129
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 1 cut(s) 176
ScrFI CCNGG 3 cut(s) 81, 219, 237
SetI ASST 3 cut(s) 50, 82, 181
SexAI ACCWGGT 1 cut(s) 79
SfaNI GCATC 2 cut(s) 76, 106
SinI GGWCC 1 cut(s) 176
Sse9I AATT 1 cut(s) 189
SsiI CCGC 1 cut(s) 108
SspMI CTAG 1 cut(s) 152
StyD4I CCNGG 3 cut(s) 79, 217, 235
StyI CCWWGG 1 cut(s) 227
TaaI ACNGT 1 cut(s) 207
TasI AATT 1 cut(s) 189
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 110
TscAI CASTG 1 cut(s) 212
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 28
TspRI CASTG 1 cut(s) 212
VpaK11BI GGWCC 1 cut(s) 176
XcmI CCANNNNNNNNNTGG 1 cut(s) 118
XspI CTAG 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.