Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012618

Physical Location & Seq

Genomic Coordinates Forward (+)

5400038 .. 5404918

Gene Structure 4881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09360.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGTCGCGAAACAGTGTGTGCGGTTTCTTGAAGCTTTGCACAATATGGTGTGTGATTCAGCACATGGATTGTCTACAGAAACTAAATTCGTTGACGCACTAGCAAAATATGACTTGAAATGGAAGAAATACATTTCAGCTGGTACCGTCGAAGAAGCAGTCATGAATTTTCGTAAAGGTTACGTAGGGACAGCGGTTGACCTACCAAAATTTACTCACAGCTGCGTTAAGCACTATAAAGAGACAGCGAAAAAAATGAATCAGAAAGAACTCACCCAATTAGAGGTGATAGAGAAGTTGCGTAGTATTCAGGGATTCGAATGTGTGCCAGAAGACCTTTTCAAAGCATTATACAAGGGGGCGGTTTCACTTGCCAACAACGTTCAGAGGCTCCTAACAATTACTCATCAGAGAAGATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.95

Weight (kDa)

9.28

Isoelectric Point (pI)

38.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012618)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09360 FvH4_5g09360 FvH4_5g09360 FvH4_5g09360 FvH4_5g09360 FvH4_6g42270
rosa_chinensis	RchiOBHm_Chr3g0454911
rosa_laevigata	RLG00000027153
rosa_multiflora	Rmu_sc0000152.1_g000003
rosa_roxburghii	Rroxscaffold_1G00042560 Rroxscaffold_2G00122110 Rroxscaffold_4G00287830 Rroxscaffold_4G00287950 Rroxscaffold_4G00317020
rosa_rugosa	Rorug01G0348400 Rorug04G0211500
rosa_samantha	Rh1BG318800 Rh1CG311900 Rh4CG288500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	74
AccII	CGCG	1 cut(s)	8
AciI	CCGC	3 cut(s)	22, 194, 362
AclI	AACGTT	1 cut(s)	381
AclWI	GGATC	1 cut(s)	411
AcsI	RAATTY	3 cut(s)	86, 166, 209
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	283
AgsI	TTSAA	3 cut(s)	32, 118, 343
AluBI	AGCT	3 cut(s)	35, 140, 222
AluI	AGCT	3 cut(s)	35, 140, 222
Alw26I	GTCTC	1 cut(s)	236
AlwI	GGATC	1 cut(s)	411
ApeKI	GCWGC	1 cut(s)	222
ApoI	RAATTY	3 cut(s)	86, 166, 209
ArsI	GACNNNNNNTTYG	2 cut(s)	144, 176
Asp718I	GGTACC	1 cut(s)	143
AsuHPI	GGTGA	2 cut(s)	265, 298
AsuII	TTCGAA	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	339
BbvI	GCAGC	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	236
BfaI	CTAG	2 cut(s)	101, 421
BfmI	CTRYAG	1 cut(s)	75
BisI	GCNGC	1 cut(s)	223
BlsI	GCNGC	1 cut(s)	224
BmiI	GGNNCC	2 cut(s)	145, 392
BpiI	GAAGAC	1 cut(s)	339
Bpu14I	TTCGAA	1 cut(s)	318
BsaAI	YACGTR	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseXI	GCAGC	1 cut(s)	209
Bsh1236I	CGCG	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	202
Bsp119I	TTCGAA	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	416
Bsp68I	TCGCGA	1 cut(s)	8
BspACI	CCGC	3 cut(s)	22, 194, 362
BspFNI	CGCG	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	162
BspLI	GGNNCC	2 cut(s)	145, 392
BspPI	GGATC	1 cut(s)	411
BspT104I	TTCGAA	1 cut(s)	318
BspT107I	GGYRCC	1 cut(s)	143
BssMI	GATC	1 cut(s)	416
Bst4CI	ACNGT	2 cut(s)	15, 148
BstBAI	YACGTR	1 cut(s)	184
BstBI	TTCGAA	1 cut(s)	318
BstFNI	CGCG	1 cut(s)	8
BstKTI	GATC	1 cut(s)	419
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	1 cut(s)	416
BstSFI	CTRYAG	1 cut(s)	75
BstSNI	TACGTA	1 cut(s)	184
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	209
BstV2I	GAAGAC	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
BtsIMutI	CAGTG	1 cut(s)	20
BtuMI	TCGCGA	1 cut(s)	8
CciI	TCATGA	1 cut(s)	162
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	2 cut(s)	65, 163
CviJI	RGCY	4 cut(s)	35, 140, 222, 391
CviKI_1	RGCY	4 cut(s)	35, 140, 222, 391
CviQI	GTAC	1 cut(s)	144
DpnI	GATC	1 cut(s)	418
DpnII	GATC	1 cut(s)	416
Eco105I	TACGTA	1 cut(s)	184
FaeI	CATG	2 cut(s)	68, 166
FaiI	YATR	6 cut(s)	47, 66, 111, 164, 237, 352
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	2 cut(s)	64, 162
FblI	GTMKAC	1 cut(s)	74
Fnu4HI	GCNGC	1 cut(s)	223
Fsp4HI	GCNGC	1 cut(s)	223
FspBI	CTAG	2 cut(s)	101, 421
GluI	GCNGC	1 cut(s)	223
HgaI	GACGC	1 cut(s)	104
Hin1II	CATG	2 cut(s)	68, 166
HincII	GTYRAC	2 cut(s)	94, 199
HindII	GTYRAC	2 cut(s)	94, 199
HindIII	AAGCTT	1 cut(s)	33
HinfI	GANTC	3 cut(s)	56, 259, 315
HphI	GGTGA	2 cut(s)	265, 298
Hpy166II	GTNNAC	3 cut(s)	75, 94, 199
Hpy188I	TCNGA	3 cut(s)	264, 387, 411
Hpy188III	TCNNGA	3 cut(s)	7, 29, 163
Hpy8I	GTNNAC	3 cut(s)	75, 94, 199
Hpy99I	CGWCG	1 cut(s)	152
HpyCH4III	ACNGT	2 cut(s)	15, 148
HpyCH4IV	ACGT	2 cut(s)	183, 381
HpyCH4V	TGCA	1 cut(s)	40
HpySE526I	ACGT	2 cut(s)	183, 381
Hsp92II	CATG	2 cut(s)	68, 166
KpnI	GGTACC	1 cut(s)	147
Kzo9I	GATC	1 cut(s)	416
LmnI	GCTCC	1 cut(s)	396
LpnPI	CCDG	3 cut(s)	126, 296, 342
Lsp1109I	GCAGC	1 cut(s)	209
MaeI	CTAG	2 cut(s)	101, 421
MaeII	ACGT	2 cut(s)	183, 381
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	1 cut(s)	418
MboI	GATC	1 cut(s)	416
MboII	GAAGA	3 cut(s)	136, 164, 344
MflI	RGATCY	1 cut(s)	416
MluCI	AATT	5 cut(s)	86, 166, 209, 278, 399
MnlI	CCTC	2 cut(s)	277, 381
MseI	TTAA	1 cut(s)	228
MspA1I	CMGCKG	3 cut(s)	140, 194, 222
MvnI	CGCG	1 cut(s)	8
NdeII	GATC	1 cut(s)	416
NlaIII	CATG	2 cut(s)	68, 166
NlaIV	GGNNCC	2 cut(s)	145, 392
NruI	TCGCGA	1 cut(s)	8
NspV	TTCGAA	1 cut(s)	318
PagI	TCATGA	1 cut(s)	162
PfeI	GAWTC	3 cut(s)	56, 259, 315
PkrI	GCNGC	1 cut(s)	224
Ppu21I	YACGTR	1 cut(s)	184
Psp1406I	AACGTT	1 cut(s)	381
PspN4I	GGNNCC	2 cut(s)	145, 392
PsuI	RGATCY	1 cut(s)	416
PvuII	CAGCTG	2 cut(s)	140, 222
RruI	TCGCGA	1 cut(s)	8
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	1 cut(s)	223
Sau3AI	GATC	1 cut(s)	416
SetI	ASST	9 cut(s)	37, 142, 181, 186, 204, 224, 288, 339, 384
SfcI	CTRYAG	1 cut(s)	75
SfuI	TTCGAA	1 cut(s)	318
SnaBI	TACGTA	1 cut(s)	184
Sse9I	AATT	5 cut(s)	86, 166, 209, 278, 399
SsiI	CCGC	3 cut(s)	22, 194, 362
SspMI	CTAG	2 cut(s)	101, 421
TaaI	ACNGT	2 cut(s)	15, 148
TaiI	ACGT	2 cut(s)	186, 384
TaqI	TCGA	2 cut(s)	150, 318
TasI	AATT	5 cut(s)	86, 166, 209, 278, 399
TfiI	GAWTC	3 cut(s)	56, 259, 315
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	20
TseI	GCWGC	1 cut(s)	222
TspDTI	ATGAA	2 cut(s)	179, 272
TspRI	CASTG	1 cut(s)	20
XapI	RAATTY	3 cut(s)	86, 166, 209
XmiI	GTMKAC	1 cut(s)	74
XspI	CTAG	2 cut(s)	101, 421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.