FvH4_6g42270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012618
Physical Location & Seq
Forward (+)
33010605 .. 33011942
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g42270.t1

Sequence Viewer

Length: 1134 bp
ATGGATGCACTAGATATTGAGAGCCGCTTGCGTAAGGAGGCTTTCGCTTGTTCGCAGACATTGGAAGTATGCTATCATATTTCGACTTTAGATATTGGAGACCCGGAAATTTGTTACGGTATTTTTGAACCAGTTCCAAAACAATATTCTCGTGGAGTAATAAGGAGGTTCGAAACTTTGGAAGAAGCCAGTTCTCACTATCAAAGTTTGAAGGAAAACAACCCTAGCCCCTCATACGTGATAAAACCAGATGGGCATTTGCCTCGGCACTCTGATGATGGAGGTGCTTGTAAGGTCAAATATTCTTGTGTGTTTGAAAAATTGCAGCACTGGTTGGACAACTTTGTAAAGAAGAATAGGTCTGATGTCGATCTTTTTAAGTTTTTGGATAATCTTGGTCCAGCATTGGAGTATCGGTATAAAAAGACGGGTTCGATTGGCGACATTGTGAATGACACGGTCATAACCGATGATGGACGAGTTCTCTTCTGGAATTGGGCTCCAAAAAGTAAAGATTTCAAAACTGAAGTTGGTATACTCCGAAACTTTATTGTAGATATAAAGACGCTAGCAAAGAATCCTAGTCGTCTTCAAGCATTTGAGGACTTTATCAACGACGTCATTCTAGTTTTTCCAGATCCCGCTACTGATTTGCAATTATGGGTTTTCAATTATCCAGTATTTATGACCAAGAAAAAGAGTGTGAGGTTTCTTGAAGCTTTGCACAAGATGGTGTGTGATCCCAGTTATCCAATGTCTACAAATGTTGAATTCAACGATGCAATACGAAAATATGACACGACATGGAAAAATAATTTGAGCACATACCTCGTGTTGCAAAAAATTTTGACTTTTCGTGGTGGTTACAAAGTGGATAGCTTTGAACTACCAAGATATGTATATAACAGCGTTAAACACTACGGCCAACATGCACAAAATTTGAATCAGCCTGAACTCACCCAAGTCGAGGTTATAGACTTGTTCTATTCTATCCAGGATTTTGAAGCTTTGCCAGAAGACTTATTTCGAGCATTATACGAGGGTGTGAATTCGCTTGAGCAAAACTTGCAAACTCCTTCGAATTACTCATTAGAGAAGGTGTTGGACATGGTGAAAGGAGGAGAAAGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

378

Amino Acids

43.58

Weight (kDa)

5.49

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 621
AccI GTMKAC 2 cut(s) 535, 758
AciI CCGC 2 cut(s) 25, 642
AclWI GGATC 2 cut(s) 632, 734
AcoI YGGCCR 1 cut(s) 922
AcsI RAATTY 5 cut(s) 108, 770, 843, 937, 1048
AcuI CTGAAG 1 cut(s) 546
AcyI GRCGYC 1 cut(s) 618
AfiI CCNNNNNNNGG 1 cut(s) 967
AjnI CCWGG 1 cut(s) 993
AjuI GAANNNNNNNTTGG 2 cut(s) 130, 162
AluBI AGCT 3 cut(s) 719, 879, 1007
AluI AGCT 3 cut(s) 719, 879, 1007
Alw21I GWGCWC 1 cut(s) 824
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 2 cut(s) 632, 734
AoxI GGCC 1 cut(s) 922
ApeKI GCWGC 1 cut(s) 325
ApoI RAATTY 5 cut(s) 108, 770, 843, 937, 1048
Asp700I GAANNNNTTC 1 cut(s) 132
AspS9I GGNCC 1 cut(s) 398
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 949, 1123
AsuII TTCGAA 2 cut(s) 171, 1079
AsuNHI GCTAGC 1 cut(s) 568
AvaII GGWCC 1 cut(s) 398
BanII GRGCYC 1 cut(s) 502
BarI GAAGNNNNNNTAC 2 cut(s) 519, 551
BauI CACGAG 2 cut(s) 150, 830
BbsI GAAGAC 2 cut(s) 581, 1023
Bbv12I GWGCWC 1 cut(s) 824
BbvI GCAGC 1 cut(s) 337
BccI CCATC 4 cut(s) 245, 272, 467, 724
BceAI ACGGC 1 cut(s) 937
BcgI CGANNNNNNTGC 4 cut(s) 245, 279, 811, 845
BciT130I CCWGG 1 cut(s) 995
BcnI CCSGG 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 5 cut(s) 11, 225, 569, 582, 626
BisI GCNGC 2 cut(s) 25, 326
BlsI GCNGC 2 cut(s) 26, 327
Bme1390I CCNGG 2 cut(s) 104, 995
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 1 cut(s) 501
BmrFI CCNGG 2 cut(s) 104, 995
BmrI ACTGGG 1 cut(s) 738
BmsI GCATC 1 cut(s) 769
BmtI GCTAGC 1 cut(s) 572
BmuI ACTGGG 1 cut(s) 738
BpiI GAAGAC 2 cut(s) 581, 1023
Bpu14I TTCGAA 2 cut(s) 171, 1079
BpuEI CTTGAG 1 cut(s) 1076
BpuMI CCSGG 1 cut(s) 104
BsaAI YACGTR 1 cut(s) 238
BsaBI GATNNNNATC 1 cut(s) 369
BsaHI GRCGYC 1 cut(s) 618
BsaI GGTCTC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 263
BsaXI ACNNNNNCTCC 2 cut(s) 401, 431
Bsc4I CCNNNNNNNGG 1 cut(s) 967
Bse1I ACTGG 5 cut(s) 131, 189, 335, 677, 744
Bse8I GATNNNNATC 1 cut(s) 369
BseBI CCWGG 1 cut(s) 995
BseDI CCNNGG 1 cut(s) 263
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 1 cut(s) 967
BseNI ACTGG 5 cut(s) 131, 189, 335, 677, 744
BseRI GAGGAG 1 cut(s) 1134
BseXI GCAGC 1 cut(s) 337
BshFI GGCC 1 cut(s) 924
BsiHKAI GWGCWC 1 cut(s) 824
BsiSI CCGG 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 967
BsmAI GTCTC 1 cut(s) 93
BsnI GGCC 1 cut(s) 924
Bso31I GGTCTC 1 cut(s) 93
Bsp119I TTCGAA 2 cut(s) 171, 1079
Bsp1286I GDGCHC 2 cut(s) 502, 824
Bsp143I GATC 3 cut(s) 370, 637, 739
BspACI CCGC 2 cut(s) 25, 642
BspANI GGCC 1 cut(s) 924
BspLI GGNNCC 1 cut(s) 501
BspOI GCTAGC 1 cut(s) 572
BspPI GGATC 2 cut(s) 632, 734
BspT104I TTCGAA 2 cut(s) 171, 1079
BspTNI GGTCTC 1 cut(s) 93
BsrI ACTGG 5 cut(s) 131, 189, 335, 677, 744
BssECI CCNNGG 1 cut(s) 263
BssMI GATC 3 cut(s) 370, 637, 739
BssNAI GTATAC 1 cut(s) 536
BssNI GRCGYC 1 cut(s) 618
BssSI CACGAG 2 cut(s) 150, 830
Bst1107I GTATAC 1 cut(s) 536
Bst2BI CACGAG 2 cut(s) 150, 830
Bst2UI CCWGG 1 cut(s) 995
Bst4CI ACNGT 2 cut(s) 119, 460
Bst6I CTCTTC 1 cut(s) 491
BstACI GRCGYC 1 cut(s) 618
BstAPI GCANNNNNTGC 1 cut(s) 1066
BstBAI YACGTR 1 cut(s) 238
BstBI TTCGAA 2 cut(s) 171, 1079
BstC8I GCNNGC 2 cut(s) 29, 570
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 373, 640, 742
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 3 cut(s) 370, 637, 739
BstMWI GCNNNNNNNGC 1 cut(s) 1066
BstNI CCWGG 1 cut(s) 995
BstNSI RCATGY 1 cut(s) 932
BstSCI CCNGG 2 cut(s) 102, 993
BstV1I GCAGC 1 cut(s) 337
BstV2I GAAGAC 2 cut(s) 581, 1023
BstX2I RGATCY 1 cut(s) 637
BstYI RGATCY 1 cut(s) 637
BstZ17I GTATAC 1 cut(s) 536
BsuRI GGCC 1 cut(s) 924
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 328
Cac8I GCNNGC 2 cut(s) 29, 570
Cfr13I GGNCC 1 cut(s) 398
CseI GACGC 1 cut(s) 574
CviAII CATG 3 cut(s) 804, 929, 1108
DpnI GATC 3 cut(s) 372, 639, 741
DpnII GATC 3 cut(s) 370, 637, 739
EaeI YGGCCR 1 cut(s) 922
Eam1104I CTCTTC 1 cut(s) 491
EarI CTCTTC 1 cut(s) 491
Eco24I GRGCYC 1 cut(s) 502
Eco31I GGTCTC 1 cut(s) 93
Eco47I GGWCC 1 cut(s) 398
Eco57I CTGAAG 1 cut(s) 546
EcoRI GAATTC 2 cut(s) 770, 1048
EcoRII CCWGG 1 cut(s) 993
EcoT38I GRGCYC 1 cut(s) 502
FaeI CATG 3 cut(s) 807, 932, 1111
FatI CATG 3 cut(s) 803, 928, 1107
FauI CCCGC 1 cut(s) 649
FblI GTMKAC 2 cut(s) 535, 758
Fnu4HI GCNGC 2 cut(s) 25, 326
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 502
Fsp4HI GCNGC 2 cut(s) 25, 326
FspBI CTAG 5 cut(s) 11, 225, 569, 582, 626
GluI GCNGC 2 cut(s) 25, 326
HaeIII GGCC 1 cut(s) 924
HapII CCGG 1 cut(s) 104
HgaI GACGC 1 cut(s) 574
Hin1I GRCGYC 1 cut(s) 618
Hin1II CATG 3 cut(s) 807, 932, 1111
HindIII AAGCTT 2 cut(s) 717, 1005
HinfI GANTC 2 cut(s) 577, 943
HpaII CCGG 1 cut(s) 104
HphI GGTGA 2 cut(s) 949, 1123
Hpy166II GTNNAC 2 cut(s) 536, 759
Hpy188I TCNGA 3 cut(s) 274, 364, 542
Hpy188III TCNNGA 3 cut(s) 490, 635, 713
Hpy8I GTNNAC 2 cut(s) 536, 759
Hpy99I CGWCG 1 cut(s) 620
HpyAV CCTTC 3 cut(s) 205, 1086, 1090
HpyCH4III ACNGT 2 cut(s) 119, 460
HpyCH4IV ACGT 2 cut(s) 237, 618
HpyCH4V TGCA 8 cut(s) 8, 325, 655, 724, 782, 838, 932, 1069
HpyF10VI GCNNNNNNNGC 1 cut(s) 1066
HpySE526I ACGT 2 cut(s) 237, 618
Hsp92I GRCGYC 1 cut(s) 618
Hsp92II CATG 3 cut(s) 807, 932, 1111
Kzo9I GATC 3 cut(s) 370, 637, 739
LmnI GCTCC 1 cut(s) 505
Lsp1109I GCAGC 1 cut(s) 337
LweI GCATC 1 cut(s) 769
MaeI CTAG 5 cut(s) 11, 225, 569, 582, 626
MaeII ACGT 2 cut(s) 237, 618
MaeIII GTNAC 2 cut(s) 113, 863
MalI GATC 3 cut(s) 372, 639, 741
MboI GATC 3 cut(s) 370, 637, 739
MboII GAAGA 5 cut(s) 194, 364, 478, 581, 1028
MflI RGATCY 1 cut(s) 637
MhlI GDGCHC 2 cut(s) 502, 824
MmeI TCCRAC 2 cut(s) 315, 1083
MroXI GAANNNNTTC 1 cut(s) 132
MseI TTAA 2 cut(s) 378, 912
MslI CAYNNNNRTG 1 cut(s) 273
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 2 cut(s) 104, 995
MvaI CCWGG 1 cut(s) 995
MwoI GCNNNNNNNGC 1 cut(s) 1066
NciI CCSGG 1 cut(s) 104
NdeII GATC 3 cut(s) 370, 637, 739
NheI GCTAGC 1 cut(s) 568
NlaIII CATG 3 cut(s) 807, 932, 1111
NlaIV GGNNCC 1 cut(s) 501
NmeAIII GCCGAG 1 cut(s) 244
NspI RCATGY 1 cut(s) 932
NspV TTCGAA 2 cut(s) 171, 1079
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 2 cut(s) 577, 943
PflFI GACNNNGTC 1 cut(s) 458
PfoI TCCNGGA 1 cut(s) 993
PkrI GCNGC 2 cut(s) 26, 327
Ppu21I YACGTR 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 993
PspGI CCWGG 1 cut(s) 993
PspN4I GGNNCC 1 cut(s) 501
PspPI GGNCC 1 cut(s) 398
PsuI RGATCY 1 cut(s) 637
PsyI GACNNNGTC 1 cut(s) 458
RseI CAYNNNNRTG 1 cut(s) 273
SaqAI TTAA 2 cut(s) 378, 912
SatI GCNGC 2 cut(s) 25, 326
Sau3AI GATC 3 cut(s) 370, 637, 739
Sau96I GGNCC 1 cut(s) 398
ScrFI CCNGG 2 cut(s) 104, 995
SduI GDGCHC 2 cut(s) 502, 824
SfaNI GCATC 1 cut(s) 769
SfuI TTCGAA 2 cut(s) 171, 1079
SinI GGWCC 1 cut(s) 398
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 1055
SmoI CTYRAG 1 cut(s) 1055
SsiI CCGC 2 cut(s) 25, 642
SspI AATATT 2 cut(s) 146, 302
SspMI CTAG 5 cut(s) 11, 225, 569, 582, 626
StyD4I CCNGG 2 cut(s) 102, 993
TaaI ACNGT 2 cut(s) 119, 460
TaiI ACGT 2 cut(s) 240, 621
TaqI TCGA 7 cut(s) 83, 171, 369, 434, 966, 1027, 1079
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 2 cut(s) 577, 943
Tru1I TTAA 2 cut(s) 378, 912
Tru9I TTAA 2 cut(s) 378, 912
TscAI CASTG 1 cut(s) 335
TseI GCWGC 1 cut(s) 325
TspRI CASTG 1 cut(s) 335
Tth111I GACNNNGTC 1 cut(s) 458
VpaK11BI GGWCC 1 cut(s) 398
XapI RAATTY 5 cut(s) 108, 770, 843, 937, 1048
XceI RCATGY 1 cut(s) 932
XmiI GTMKAC 2 cut(s) 535, 758
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 5 cut(s) 11, 225, 569, 582, 626
ZraI GACGTC 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.