Rroxscaffold_2G00122110

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
54997791 .. 55003644
5854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00122110.1

Sequence Viewer

Length: 303 bp
ATGCGGTGCAACAATGCCAAAATGCTGGTGTTAAGGTATGCATGGTTACGGGTGACAATCTTCAAACTGAAAAAGCAATTGCTTTGGAGTGTGGCATACTTGGTTCCGAAGCGGATGCTACTTGAACAAAATATCATTGAAGGCATAGATGGACATGGAGATATGAAGCTCATTTATGGGAAAAAGGGTCTTGGAATCCAGCACAAAGGAAGAAGGGAAAATAGGGACGCAATAGGCCTTCACTCACCCACAGCAAAGCGCGGGCCTGTATCATCACTAGTTGTTACTCGTTCGCAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.38

Weight (kDa)

10.65

Isoelectric Point (pI)

52.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 261
AciI CCGC 3 cut(s) 4, 112, 261
AgsI TTSAA 3 cut(s) 64, 125, 140
AhlI ACTAGT 1 cut(s) 277
AluBI AGCT 2 cut(s) 169, 299
AluI AGCT 2 cut(s) 169, 299
AoxI GGCC 2 cut(s) 235, 263
AspLEI GCGC 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 2 cut(s) 64, 237
BccI CCATC 1 cut(s) 143
BcgI CGANNNNNNTGC 2 cut(s) 97, 131
BcuI ACTAGT 1 cut(s) 277
BfaI CTAG 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 105
BmsI GCATC 1 cut(s) 105
BseGI GGATG 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 2 cut(s) 237, 265
BslFI GGGAC 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 2 cut(s) 237, 265
BspACI CCGC 3 cut(s) 4, 112, 261
BspANI GGCC 2 cut(s) 237, 265
BspFNI CGCG 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 263, 297
BstF5I GGATG 1 cut(s) 120
BstFNI CGCG 1 cut(s) 261
BstHHI GCGC 1 cut(s) 261
BstUI CGCG 1 cut(s) 261
BstXI CCANNNNNNTGG 1 cut(s) 25
BsuRI GGCC 2 cut(s) 237, 265
BtsCI GGATG 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 263, 297
CfoI GCGC 1 cut(s) 261
Cfr13I GGNCC 1 cut(s) 263
CseI GACGC 1 cut(s) 236
CviAII CATG 2 cut(s) 42, 155
CviJI RGCY 4 cut(s) 169, 237, 265, 299
CviKI_1 RGCY 4 cut(s) 169, 237, 265, 299
Eco147I AGGCCT 1 cut(s) 237
EcoT22I ATGCAT 1 cut(s) 43
FaeI CATG 2 cut(s) 45, 158
FaiI YATR 7 cut(s) 39, 43, 97, 146, 156, 164, 177
FaqI GGGAC 1 cut(s) 239
FatI CATG 2 cut(s) 41, 154
FauI CCCGC 1 cut(s) 254
FokI GGATG 1 cut(s) 127
FspBI CTAG 1 cut(s) 278
GlaI GCGC 1 cut(s) 260
HaeIII GGCC 2 cut(s) 237, 265
HgaI GACGC 1 cut(s) 236
HhaI GCGC 1 cut(s) 261
Hin1II CATG 2 cut(s) 45, 158
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HindIII AAGCTT 1 cut(s) 297
HinfI GANTC 1 cut(s) 195
HphI GGTGA 2 cut(s) 64, 237
Hpy188I TCNGA 1 cut(s) 108
HpyAV CCTTC 3 cut(s) 134, 207, 248
HpyCH4V TGCA 2 cut(s) 9, 41
Hsp92II CATG 2 cut(s) 45, 158
HspAI GCGC 1 cut(s) 259
LpnPI CCDG 3 cut(s) 11, 212, 279
LweI GCATC 1 cut(s) 105
MaeI CTAG 1 cut(s) 278
MaeIII GTNAC 3 cut(s) 45, 52, 283
MboII GAAGA 2 cut(s) 52, 222
MfeI CAATTG 1 cut(s) 77
MluCI AATT 1 cut(s) 77
Mph1103I ATGCAT 1 cut(s) 43
MseI TTAA 2 cut(s) 32, 301
MunI CAATTG 1 cut(s) 77
MvnI CGCG 1 cut(s) 261
NlaIII CATG 2 cut(s) 45, 158
NlaIV GGNNCC 1 cut(s) 105
NmuCI GTSAC 1 cut(s) 52
NsiI ATGCAT 1 cut(s) 43
PceI AGGCCT 1 cut(s) 237
PfeI GAWTC 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 105
PspPI GGNCC 1 cut(s) 263
SaqAI TTAA 2 cut(s) 32, 301
Sau96I GGNCC 1 cut(s) 263
SetI ASST 3 cut(s) 38, 171, 301
SfaNI GCATC 1 cut(s) 105
SpeI ACTAGT 1 cut(s) 277
Sse9I AATT 1 cut(s) 77
SseBI AGGCCT 1 cut(s) 237
SsiI CCGC 3 cut(s) 4, 112, 261
SspMI CTAG 1 cut(s) 278
StuI AGGCCT 1 cut(s) 237
TasI AATT 1 cut(s) 77
TfiI GAWTC 1 cut(s) 195
Tru1I TTAA 2 cut(s) 32, 301
Tru9I TTAA 2 cut(s) 32, 301
TseFI GTSAC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 1 cut(s) 179
XspI CTAG 1 cut(s) 278
Zsp2I ATGCAT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.