Rroxscaffold_1G00042560

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
60877793 .. 60879755
1963 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00042560.1

Sequence Viewer

Length: 396 bp
ATGCATCAGTGGGAGGAGGAACGAAGATGCAGAGGAGAGAAAGGAAAAGAAAATGAAGAGGGAGTGCTTTCAGCAATTAGATACGCTCTGATCGAAATTCCAAGCTATCAAGAAGTATATCTATCAGTTGGAAAAGATTCAGAAAGGTTTAGGTGTGCTTCTTCAGACAGTTACTATGAGTACCTGACTCTGAGGCATGGTTTTATCTCAGTAAATTTAAATGTTGAAGAGCCTAACGTTAAAAATTTATATGCAAGCATAGATGGACGGGGAGATATGAAGCTCATTTATGGAACAAAGGATCTTGGAATCCAAGACAAAGGAAGAAGGGAAAACAGGGCTTATGACAAAGAAGAATCCACAGCAAAAGCATATGAGTTGGCAGCACTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

15.15

Weight (kDa)

5.53

Isoelectric Point (pI)

49.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 237
AclWI GGATC 1 cut(s) 309
AcsI RAATTY 3 cut(s) 96, 214, 244
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 1 cut(s) 182
AgsI TTSAA 1 cut(s) 227
AluBI AGCT 2 cut(s) 105, 283
AluI AGCT 2 cut(s) 105, 283
AlwI GGATC 1 cut(s) 309
ApeKI GCWGC 1 cut(s) 383
ApoI RAATTY 3 cut(s) 96, 214, 244
Asp700I GAANNNNTTC 1 cut(s) 136
BccI CCATC 1 cut(s) 257
BisI GCNGC 1 cut(s) 384
BlsI GCNGC 1 cut(s) 385
BmsI GCATC 2 cut(s) 13, 17
BpuEI CTTGAG 1 cut(s) 374
BseMII CTCAG 2 cut(s) 182, 222
BseRI GAGGAG 2 cut(s) 29, 48
Bsp143I GATC 2 cut(s) 90, 301
BspCNI CTCAG 2 cut(s) 183, 221
BspPI GGATC 1 cut(s) 309
BspQI GCTCTTC 1 cut(s) 222
BssMI GATC 2 cut(s) 90, 301
Bst4CI ACNGT 1 cut(s) 170
Bst6I CTCTTC 2 cut(s) 51, 222
BstC8I GCNNGC 1 cut(s) 256
BstDEI CTNAG 2 cut(s) 191, 208
BstKTI GATC 2 cut(s) 93, 304
BstMBI GATC 2 cut(s) 90, 301
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 256
Csp6I GTAC 1 cut(s) 181
CviAII CATG 1 cut(s) 197
CviJI RGCY 4 cut(s) 105, 232, 283, 341
CviKI_1 RGCY 4 cut(s) 105, 232, 283, 341
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 2 cut(s) 191, 208
DpnI GATC 2 cut(s) 92, 303
DpnII GATC 2 cut(s) 90, 301
DraI TTTAAA 1 cut(s) 219
Eam1104I CTCTTC 2 cut(s) 51, 222
EarI CTCTTC 2 cut(s) 51, 222
Eco57I CTGAAG 1 cut(s) 147
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 200
FatI CATG 1 cut(s) 196
FauNDI CATATG 1 cut(s) 373
Fnu4HI GCNGC 1 cut(s) 384
Fsp4HI GCNGC 1 cut(s) 384
GluI GCNGC 1 cut(s) 384
Hin1II CATG 1 cut(s) 200
HinfI GANTC 4 cut(s) 137, 187, 309, 356
Hpy188I TCNGA 4 cut(s) 90, 142, 166, 192
Hpy188III TCNNGA 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 321
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 3 cut(s) 4, 30, 254
HpyF3I CTNAG 2 cut(s) 191, 208
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 1 cut(s) 200
Kzo9I GATC 2 cut(s) 90, 301
LguI GCTCTTC 1 cut(s) 222
LpnPI CCDG 2 cut(s) 197, 322
LweI GCATC 2 cut(s) 13, 17
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 170
MalI GATC 2 cut(s) 92, 303
MboI GATC 2 cut(s) 90, 301
MboII GAAGA 6 cut(s) 36, 68, 153, 239, 336, 365
MflI RGATCY 1 cut(s) 301
MluCI AATT 4 cut(s) 75, 96, 214, 244
MlyI GAGTC 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 5 cut(s) 7, 10, 26, 52, 186
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 136
MseI TTAA 2 cut(s) 218, 240
NdeI CATATG 1 cut(s) 373
NdeII GATC 2 cut(s) 90, 301
NlaIII CATG 1 cut(s) 200
NsiI ATGCAT 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 222
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 136
PfeI GAWTC 3 cut(s) 137, 309, 356
PkrI GCNGC 1 cut(s) 385
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
Psp1406I AACGTT 1 cut(s) 237
PsuI RGATCY 1 cut(s) 301
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 2 cut(s) 218, 240
SatI GCNGC 1 cut(s) 384
Sau3AI GATC 2 cut(s) 90, 301
SchI GAGTC 1 cut(s) 181
SetI ASST 6 cut(s) 107, 149, 155, 186, 240, 285
SfaNI GCATC 2 cut(s) 13, 17
SgeI CNNG 9 cut(s) 114, 122, 196, 209, 267, 281, 317, 326, 349
SmiI ATTTAAAT 1 cut(s) 219
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
Sse9I AATT 4 cut(s) 75, 96, 214, 244
SwaI ATTTAAAT 1 cut(s) 219
TaaI ACNGT 1 cut(s) 170
TaiI ACGT 1 cut(s) 240
TaqI TCGA 1 cut(s) 93
TasI AATT 4 cut(s) 75, 96, 214, 244
TfiI GAWTC 3 cut(s) 137, 309, 356
Tru1I TTAA 2 cut(s) 218, 240
Tru9I TTAA 2 cut(s) 218, 240
TscAI CASTG 1 cut(s) 14
TseI GCWGC 1 cut(s) 383
TspDTI ATGAA 2 cut(s) 69, 293
TspRI CASTG 1 cut(s) 14
XapI RAATTY 3 cut(s) 96, 214, 244
XmnI GAANNNNTTC 1 cut(s) 136
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.