Rroxscaffold_4G00287830

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
8779669 .. 8782783
3115 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00287830.1

Sequence Viewer

Length: 195 bp
ATGGGTGTGCTTTCAATAAGTGGTATTGCTCTGAAGTACATCAGAACAGCCCTGAATATGGTGAAAGGAGGGGAAATGCTGGAGGACAAGGAAAGGAAAGGAGAAGGAAGGTTTTCTGTAGATTCATCAAATTTCTATGGGAAGTCTGCCAAGTGCCGCTTGCATCTTCTGTTTCTTGGAAAGCTGAAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.13

Weight (kDa)

9.84

Isoelectric Point (pI)

5.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 157
AcsI RAATTY 1 cut(s) 130
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 1 cut(s) 15
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
ApoI RAATTY 1 cut(s) 130
Asp700I GAANNNNTTC 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 73
BfmI CTRYAG 1 cut(s) 117
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
BmsI GCATC 1 cut(s) 172
BpmI CTGGAG 1 cut(s) 101
Bsc4I CCNNNNNNNGG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 58
BspACI CCGC 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 161
BstSFI CTRYAG 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 37
CviJI RGCY 2 cut(s) 50, 184
CviKI_1 RGCY 2 cut(s) 50, 184
CviQI GTAC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 53
FaiI YATR 2 cut(s) 59, 138
FalI AAGNNNNNCTT 2 cut(s) 143, 175
Fnu4HI GCNGC 1 cut(s) 157
Fsp4HI GCNGC 1 cut(s) 157
GluI GCNGC 1 cut(s) 157
GsuI CTGGAG 1 cut(s) 101
HinfI GANTC 1 cut(s) 122
HphI GGTGA 1 cut(s) 73
Hpy188I TCNGA 2 cut(s) 33, 44
HpyAV CCTTC 2 cut(s) 98, 102
HpyCH4V TGCA 1 cut(s) 163
LpnPI CCDG 2 cut(s) 65, 65
LweI GCATC 1 cut(s) 172
MboII GAAGA 1 cut(s) 158
MluCI AATT 1 cut(s) 130
MnlI CCTC 2 cut(s) 62, 76
MroXI GAANNNNTTC 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 1 cut(s) 158
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SatI GCNGC 1 cut(s) 157
SetI ASST 2 cut(s) 113, 186
SfaNI GCATC 1 cut(s) 172
SfcI CTRYAG 1 cut(s) 117
SgeI CNNG 6 cut(s) 64, 92, 100, 163, 172, 188
Sse9I AATT 1 cut(s) 130
SsiI CCGC 1 cut(s) 157
TasI AATT 1 cut(s) 130
TatI WGTACW 1 cut(s) 36
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 1 cut(s) 122
TspDTI ATGAA 1 cut(s) 114
XapI RAATTY 1 cut(s) 130
XmnI GAANNNNTTC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.