RLG00000027153

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0012618
Physical Location & Seq
Forward (+)
9083343 .. 9085800
2458 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027153

Sequence Viewer

Length: 822 bp
ATGGATGCATTTGATATTTCAAGACGTTTAAGTCAAGAAGCATCCGTTTGTTTGCATACATTAAAAATTCCTTTCCACATTTCAACCTTGGATACTGGGGATAAGGATATTTGTTATGGGATATTTGAACATATCCCAAAACAATATACCTTTGGAGTGATAAGGAGATTTGAGACTCTGGAGAAATTAAGTTCTCATATTAGCAGTTTGAATGAAGATAACCCAGACTTTGGATACATCATCAAGCCAGATGGTTTTTTCACTCTGGTTGATATTGAAGGGGATGTTTGCATGGTGAAGTACCATCGGGTTTTTGAGACTGCCGAGCATTGGTACGAAAACTTCCGAGAAAAAAAAAAGCTGATTCAGTTCCCGTTCCCACTGCCGATTTCCGATTATGGGTTCAATTATCCTGTATTCATGACCAAGAAAAAGAGAGTGAGATTTCTTGAAGGGTTGTCTAAGATGGTGTCTGATGAGGTATGTGCATTAGGAATCATTTTCGATTTCGAGAATGAACTACAAAGGTATCAGCTTGATTGGGACCAAAACTTGGGCACCGATCCAGTGTTGCTTGCTGTTCTGGGTTATAAGAAAGGTTATCATGCGACAGCTAAGGACTTAGCAAGATTTCTGTATAACTGCATTAAACACTATGCTGAGCAAGCGCAAAATTTGAATAAGGAGGGGAGAATGTTTGAGGAGAAGGAAAGGAGAGGAGAAGGACGGTGGGAATTGTTTTGTGCAGATTCATCAAATTTCTATGGGAAGTCTGCCAAGTGCCACTTGGATCTTCTGTTTCTTGGAAAGTTGGAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

31.98

Weight (kDa)

6.08

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 591
AasI GACNNNNNNGTC 1 cut(s) 30
AccB1I GGYRCC 1 cut(s) 557
AccB7I CCANNNNNTGG 2 cut(s) 230, 553
AclWI GGATC 2 cut(s) 557, 798
AcsI RAATTY 3 cut(s) 66, 673, 757
AfaI GTAC 2 cut(s) 302, 335
AfiI CCNNNNNNNGG 4 cut(s) 230, 330, 399, 553
AgsI TTSAA 8 cut(s) 21, 84, 128, 211, 278, 406, 452, 679
AluBI AGCT 3 cut(s) 361, 535, 614
AluI AGCT 3 cut(s) 361, 535, 614
Alw26I GTCTC 2 cut(s) 167, 311
AlwI GGATC 2 cut(s) 557, 798
ApoI RAATTY 3 cut(s) 66, 673, 757
AspLEI GCGC 1 cut(s) 670
AspS9I GGNCC 1 cut(s) 544
AsuHPI GGTGA 1 cut(s) 307
AvaII GGWCC 1 cut(s) 544
BaeGI GKGCMC 1 cut(s) 560
BaeI ACNNNNGTAYC 2 cut(s) 512, 545
BanI GGYRCC 1 cut(s) 557
BarI GAAGNNNNNNTAC 2 cut(s) 326, 358
BccI CCATC 3 cut(s) 245, 312, 460
BciVI GTATCC 2 cut(s) 85, 227
BcoDI GTCTC 2 cut(s) 167, 311
BfuI GTATCC 2 cut(s) 85, 227
BlpI GCTNAGC 1 cut(s) 660
Bme18I GGWCC 1 cut(s) 544
BmgT120I GGNCC 1 cut(s) 544
BmiI GGNNCC 2 cut(s) 545, 559
BmrI ACTGGG 1 cut(s) 105
BmsI GCATC 1 cut(s) 50
BmuI ACTGGG 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 200
Bpu10I CCTNAGC 1 cut(s) 615
Bpu1102I GCTNAGC 1 cut(s) 660
BsaJI CCNNGG 1 cut(s) 87
Bsc4I CCNNNNNNNGG 4 cut(s) 230, 330, 399, 553
Bse1I ACTGG 2 cut(s) 100, 566
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 3 cut(s) 10, 41, 289
BseLI CCNNNNNNNGG 4 cut(s) 230, 330, 399, 553
BseMII CTCAG 1 cut(s) 651
BseNI ACTGG 2 cut(s) 100, 566
BseRI GAGGAG 2 cut(s) 716, 732
BseSI GKGCMC 1 cut(s) 560
BsgI GTGCAG 1 cut(s) 765
BshNI GGYRCC 1 cut(s) 557
BslFI GGGAC 1 cut(s) 557
BslI CCNNNNNNNGG 4 cut(s) 230, 330, 399, 553
BsmAI GTCTC 2 cut(s) 167, 311
BsmFI GGGAC 1 cut(s) 557
Bsp1286I GDGCHC 1 cut(s) 560
Bsp143I GATC 2 cut(s) 562, 790
Bsp1720I GCTNAGC 1 cut(s) 660
BspCNI CTCAG 1 cut(s) 652
BspHI TCATGA 1 cut(s) 420
BspLI GGNNCC 2 cut(s) 545, 559
BspPI GGATC 2 cut(s) 557, 798
BspT107I GGYRCC 1 cut(s) 557
BsrI ACTGG 2 cut(s) 100, 566
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 2 cut(s) 562, 790
BssT1I CCWWGG 1 cut(s) 87
Bst4CI ACNGT 1 cut(s) 729
BstC8I GCNNGC 2 cut(s) 576, 666
BstDEI CTNAG 4 cut(s) 462, 615, 622, 660
BstF5I GGATG 3 cut(s) 10, 41, 289
BstHHI GCGC 1 cut(s) 670
BstKTI GATC 2 cut(s) 565, 793
BstMAI GTCTC 2 cut(s) 167, 311
BstMBI GATC 2 cut(s) 562, 790
BstMWI GCNNNNNNNGC 1 cut(s) 665
BstSLI GKGCMC 1 cut(s) 560
BstX2I RGATCY 1 cut(s) 790
BstYI RGATCY 1 cut(s) 790
BsuI GTATCC 2 cut(s) 85, 227
BtsCI GGATG 3 cut(s) 10, 41, 289
BtsI GCAGTG 1 cut(s) 380
BtsIMutI CAGTG 2 cut(s) 380, 573
Cac8I GCNNGC 2 cut(s) 576, 666
CciI TCATGA 1 cut(s) 420
CfoI GCGC 1 cut(s) 670
Cfr13I GGNCC 1 cut(s) 544
Csp6I GTAC 2 cut(s) 301, 334
CviAII CATG 3 cut(s) 292, 421, 605
CviJI RGCY 4 cut(s) 247, 361, 535, 614
CviKI_1 RGCY 4 cut(s) 247, 361, 535, 614
CviQI GTAC 2 cut(s) 301, 334
DdeI CTNAG 4 cut(s) 462, 615, 622, 660
DpnI GATC 2 cut(s) 564, 792
DpnII GATC 2 cut(s) 562, 790
DrdI GACNNNNNNGTC 1 cut(s) 30
DseDI GACNNNNNNGTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 544
EcoT14I CCWWGG 1 cut(s) 87
EcoT22I ATGCAT 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 3 cut(s) 295, 424, 608
FalI AAGNNNNNCTT 2 cut(s) 770, 802
FaqI GGGAC 1 cut(s) 557
FatI CATG 3 cut(s) 291, 420, 604
FokI GGATG 3 cut(s) 17, 28, 296
GlaI GCGC 1 cut(s) 669
GsuI CTGGAG 1 cut(s) 200
HhaI GCGC 1 cut(s) 670
Hin1II CATG 3 cut(s) 295, 424, 608
Hin6I GCGC 1 cut(s) 668
HinP1I GCGC 1 cut(s) 668
HinfI GANTC 4 cut(s) 175, 364, 495, 749
HphI GGTGA 1 cut(s) 307
Hpy188I TCNGA 3 cut(s) 347, 394, 475
Hpy188III TCNNGA 6 cut(s) 21, 35, 179, 421, 449, 511
HpyAV CCTTC 4 cut(s) 272, 446, 700, 716
HpyCH4III ACNGT 1 cut(s) 729
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 6 cut(s) 8, 55, 291, 488, 645, 746
HpyF10VI GCNNNNNNNGC 1 cut(s) 665
HpyF3I CTNAG 4 cut(s) 462, 615, 622, 660
HpySE526I ACGT 1 cut(s) 25
Hsp92II CATG 3 cut(s) 295, 424, 608
HspAI GCGC 1 cut(s) 668
Kzo9I GATC 2 cut(s) 562, 790
LmnI GCTCC 1 cut(s) 814
LpnPI CCDG 8 cut(s) 81, 164, 237, 251, 261, 426, 569, 579
LweI GCATC 1 cut(s) 50
MaeII ACGT 1 cut(s) 25
MalI GATC 2 cut(s) 564, 792
MboI GATC 2 cut(s) 562, 790
MboII GAAGA 2 cut(s) 227, 785
MflI RGATCY 1 cut(s) 790
MhlI GDGCHC 1 cut(s) 560
MluCI AATT 6 cut(s) 66, 185, 406, 673, 734, 757
MlyI GAGTC 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 792
MnlI CCTC 4 cut(s) 472, 679, 694, 710
Mph1103I ATGCAT 1 cut(s) 10
MseI TTAA 4 cut(s) 29, 62, 188, 648
MwoI GCNNNNNNNGC 1 cut(s) 665
NdeII GATC 2 cut(s) 562, 790
NlaIII CATG 3 cut(s) 295, 424, 608
NlaIV GGNNCC 2 cut(s) 545, 559
NmeAIII GCCGAG 1 cut(s) 349
NsiI ATGCAT 1 cut(s) 10
PagI TCATGA 1 cut(s) 420
PfeI GAWTC 3 cut(s) 364, 495, 749
PflMI CCANNNNNTGG 2 cut(s) 230, 553
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PsiI TTATAA 1 cut(s) 591
PspN4I GGNNCC 2 cut(s) 545, 559
PspPI GGNCC 1 cut(s) 544
PsuI RGATCY 1 cut(s) 790
RsaI GTAC 2 cut(s) 302, 335
RsaNI GTAC 2 cut(s) 301, 334
SaqAI TTAA 4 cut(s) 29, 62, 188, 648
Sau3AI GATC 2 cut(s) 562, 790
Sau96I GGNCC 1 cut(s) 544
SchI GAGTC 1 cut(s) 169
SduI GDGCHC 1 cut(s) 560
SetI ASST 9 cut(s) 28, 89, 152, 363, 483, 530, 537, 601, 616
SfaNI GCATC 1 cut(s) 50
SinI GGWCC 1 cut(s) 544
Sse9I AATT 6 cut(s) 66, 185, 406, 673, 734, 757
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 729
TaiI ACGT 1 cut(s) 28
TaqI TCGA 2 cut(s) 504, 510
TasI AATT 6 cut(s) 66, 185, 406, 673, 734, 757
TfiI GAWTC 3 cut(s) 364, 495, 749
Tru1I TTAA 4 cut(s) 29, 62, 188, 648
Tru9I TTAA 4 cut(s) 29, 62, 188, 648
TscAI CASTG 2 cut(s) 387, 573
TspDTI ATGAA 4 cut(s) 228, 409, 531, 741
TspGWI ACGGA 1 cut(s) 34
TspRI CASTG 2 cut(s) 387, 573
Van91I CCANNNNNTGG 2 cut(s) 230, 553
VpaK11BI GGWCC 1 cut(s) 544
XapI RAATTY 3 cut(s) 66, 673, 757
XcmI CCANNNNNNNNNTGG 1 cut(s) 784
Zsp2I ATGCAT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.