Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0012618

Physical Location & Seq

Genomic Coordinates Forward (+)

8863844 .. 8878105

Gene Structure 14262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00287950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCCGATTTAGTACAGCAAGGTCGGGCAGTCCGGGAATCTGACACTTTGACGGAAATCCATGATTTGAGGCCCGAATTCCTTTTAGAAGCCCACCGACGATTGAAGGACATAATTGACATGATTGGCATATTGAAGTCCCTTTTCTTTATGATAATCTCCAGTGTAGAGATGAAGAAGGGATATTCTTGGTATATTCAGTCAGTAGCTTTGAAAGACGGTGATAGTTCGTTTGAGGCAAATTTAAATGTTGAAGAGCCTAACGTTAAAAAATTATATGCAGGCATAGATGGACGGGGAGATATGAAGCTCATTTATGGAACAAAGGGTCTTGGAATCCAACACAAAGGAAGAAGGGAAAACAGAAGCTTTGAGACTCTGGAGAAATTAAGTTCTCATTTTAGGAGTTTGAATGAAGATAACCCGGACTTTGGATACATCATCAAGCCAGATGGTTTTTTCACTCCGGTTGATATTGAAGGGGATGTTTGCATGGTGAAGTACCATCACGTTTTTGAGACCGCTGAACATGGTGAAGTACCAGCATTGGAGTCTCGATACAAGAGGGCTAAATCTATTGGTGATATAAAGAAGGACATAGTTATTACAGATGATGAGCAAATATTCTTTTGGAATTGGGTTCCAAAAAGTAAGGATTTAAGTATCCCATACCAACGCTGGTCCGATTTTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

26.71

Weight (kDa)

5.69

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012618)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09360 FvH4_5g09360 FvH4_5g09360 FvH4_5g09360 FvH4_5g09360 FvH4_6g42270
rosa_chinensis	RchiOBHm_Chr3g0454911
rosa_laevigata	RLG00000027153
rosa_multiflora	Rmu_sc0000152.1_g000003
rosa_roxburghii	Rroxscaffold_1G00042560 Rroxscaffold_2G00122110 Rroxscaffold_4G00287830 Rroxscaffold_4G00287950 Rroxscaffold_4G00317020
rosa_rugosa	Rorug01G0348400 Rorug04G0211500
rosa_samantha	Rh1BG318800 Rh1CG311900 Rh4CG288500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	522
AclI	AACGTT	1 cut(s)	264
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	77, 241
AfaI	GTAC	3 cut(s)	15, 503, 540
AfiI	CCNNNNNNNGG	1 cut(s)	431
AgsI	TTSAA	6 cut(s)	106, 136, 214, 254, 412, 479
AluBI	AGCT	3 cut(s)	209, 310, 369
AluI	AGCT	3 cut(s)	209, 310, 369
Alw26I	GTCTC	3 cut(s)	368, 512, 558
AoxI	GGCC	2 cut(s)	3, 71
ApoI	RAATTY	2 cut(s)	77, 241
AspS9I	GGNCC	2 cut(s)	72, 681
AsuC2I	CCSGG	2 cut(s)	35, 425
AsuHPI	GGTGA	4 cut(s)	233, 508, 545, 593
AvaII	GGWCC	1 cut(s)	681
BccI	CCATC	3 cut(s)	284, 446, 513
BciVI	GTATCC	2 cut(s)	428, 674
BcnI	CCSGG	2 cut(s)	35, 425
BcoDI	GTCTC	3 cut(s)	368, 512, 558
BfuI	GTATCC	2 cut(s)	428, 674
Bme1390I	CCNGG	2 cut(s)	35, 425
Bme18I	GGWCC	1 cut(s)	681
BmgT120I	GGNCC	2 cut(s)	72, 681
BmiI	GGNNCC	1 cut(s)	642
BmrFI	CCNGG	2 cut(s)	35, 425
BpmI	CTGGAG	2 cut(s)	145, 401
BpuMI	CCSGG	2 cut(s)	35, 425
BsaI	GGTCTC	1 cut(s)	512
BsaWI	WCCGGW	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse1I	ACTGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	490
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseNI	ACTGG	1 cut(s)	162
BshFI	GGCC	2 cut(s)	5, 73
BsiSI	CCGG	3 cut(s)	34, 425, 467
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmAI	GTCTC	3 cut(s)	368, 512, 558
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	2 cut(s)	5, 73
Bso31I	GGTCTC	1 cut(s)	512
BspACI	CCGC	1 cut(s)	522
BspANI	GGCC	2 cut(s)	5, 73
BspLI	GGNNCC	1 cut(s)	642
BspQI	GCTCTTC	1 cut(s)	249
BspTNI	GGTCTC	1 cut(s)	512
BsrI	ACTGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	490
BstMAI	GTCTC	3 cut(s)	368, 512, 558
BstSCI	CCNGG	2 cut(s)	33, 423
BsuI	GTATCC	2 cut(s)	428, 674
BsuRI	GGCC	2 cut(s)	5, 73
BtsCI	GGATG	1 cut(s)	490
BtsIMutI	CAGTG	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	283
Cfr13I	GGNCC	2 cut(s)	72, 681
Csp6I	GTAC	3 cut(s)	14, 502, 539
CviAII	CATG	4 cut(s)	62, 121, 493, 530
CviJI	RGCY	9 cut(s)	5, 73, 92, 209, 259, 310, 369, 448, 569
CviKI_1	RGCY	9 cut(s)	5, 73, 92, 209, 259, 310, 369, 448, 569
CviQI	GTAC	3 cut(s)	14, 502, 539
DraI	TTTAAA	1 cut(s)	246
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco31I	GGTCTC	1 cut(s)	512
Eco47I	GGWCC	1 cut(s)	681
EcoRI	GAATTC	1 cut(s)	77
FaeI	CATG	4 cut(s)	65, 124, 496, 533
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	4 cut(s)	61, 120, 492, 529
FokI	GGATG	1 cut(s)	497
GsuI	CTGGAG	2 cut(s)	145, 401
HaeIII	GGCC	2 cut(s)	5, 73
HapII	CCGG	3 cut(s)	34, 425, 467
Hin1II	CATG	4 cut(s)	65, 124, 496, 533
HindIII	AAGCTT	1 cut(s)	367
HinfI	GANTC	4 cut(s)	38, 336, 376, 551
HpaII	CCGG	3 cut(s)	34, 425, 467
HphI	GGTGA	4 cut(s)	233, 508, 545, 593
Hpy188I	TCNGA	2 cut(s)	43, 685
Hpy188III	TCNNGA	2 cut(s)	380, 555
Hpy99I	CGWCG	1 cut(s)	102
HpyAV	CCTTC	5 cut(s)	100, 172, 348, 473, 586
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	2 cut(s)	264, 510
HpyCH4V	TGCA	2 cut(s)	281, 492
HpySE526I	ACGT	2 cut(s)	264, 510
Hsp92II	CATG	4 cut(s)	65, 124, 496, 533
LguI	GCTCTTC	1 cut(s)	249
LpnPI	CCDG	9 cut(s)	47, 175, 267, 365, 438, 462, 480, 555, 664
MaeII	ACGT	2 cut(s)	264, 510
MboII	GAAGA	4 cut(s)	187, 266, 363, 428
MluCI	AATT	6 cut(s)	77, 114, 241, 272, 386, 634
MlyI	GAGTC	2 cut(s)	370, 560
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	3 cut(s)	63, 229, 558
MseI	TTAA	5 cut(s)	245, 267, 389, 659, 694
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	3 cut(s)	34, 425, 467
MspR9I	CCNGG	2 cut(s)	35, 425
NciI	CCSGG	2 cut(s)	35, 425
NlaIII	CATG	4 cut(s)	65, 124, 496, 533
NlaIV	GGNNCC	1 cut(s)	642
PciSI	GCTCTTC	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	38, 336
PfoI	TCCNGGA	1 cut(s)	33
PleI	GAGTC	2 cut(s)	370, 559
PpsI	GAGTC	2 cut(s)	370, 559
Psp1406I	AACGTT	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	642
PspPI	GGNCC	2 cut(s)	72, 681
RsaI	GTAC	3 cut(s)	15, 503, 540
RsaNI	GTAC	3 cut(s)	14, 502, 539
SapI	GCTCTTC	1 cut(s)	249
SaqAI	TTAA	5 cut(s)	245, 267, 389, 659, 694
Sau96I	GGNCC	2 cut(s)	72, 681
SchI	GAGTC	2 cut(s)	370, 560
ScrFI	CCNGG	2 cut(s)	35, 425
SetI	ASST	6 cut(s)	25, 211, 267, 312, 371, 513
SinI	GGWCC	1 cut(s)	681
SmiI	ATTTAAAT	1 cut(s)	246
Sse9I	AATT	6 cut(s)	77, 114, 241, 272, 386, 634
SsiI	CCGC	1 cut(s)	522
SspI	AATATT	1 cut(s)	624
StyD4I	CCNGG	2 cut(s)	33, 423
SwaI	ATTTAAAT	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	2 cut(s)	267, 513
TaqI	TCGA	1 cut(s)	556
TasI	AATT	6 cut(s)	77, 114, 241, 272, 386, 634
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	2 cut(s)	38, 336
Tru1I	TTAA	5 cut(s)	245, 267, 389, 659, 694
Tru9I	TTAA	5 cut(s)	245, 267, 389, 659, 694
TscAI	CASTG	1 cut(s)	169
TspDTI	ATGAA	3 cut(s)	188, 320, 429
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	681
XapI	RAATTY	2 cut(s)	77, 241
XcmI	CCANNNNNNNNNTGG	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.