Rh4CG288500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
54699603 .. 54700089
487 bp
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UTR
Exon/CDS
Intron
Rh4CG288500.1

Sequence Viewer

Length: 387 bp
ATGCAATCAGATGAAATTGCTTCAGCTATAACTTCTGAGGACCAACTCCTTAGCAGACGACTGCCTTTGTTATTTGTGATTTGGAGGAATACAAAGCACAAGTACAGCTTGGGAGCATGCTTAATCATCTACCTTGATCGGTGCTTAAACCTAATCTTATTGCTTTGTCGTGGAGGTTATATACAGATTCCTTCCCCCACCGTCCCCCCACCCCCCCCCCCCCCCCGGTTGGTTATATACAGGCAATATTATAATCAATTCCCATGCTATCTATCCTTTCCTTTCTATATACTAAAAAAGCACACCATAATTTATAATCCAGTAACTTTTAACAATACTTCTCACAGGGAGTTCGAACCAGCTGGGGATCTGTTTTCAGTATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.88

Weight (kDa)

8.96

Isoelectric Point (pI)

57.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 252, 315
AclWI GGATC 1 cut(s) 375
AcuI CTGAAG 1 cut(s) 6
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 2 cut(s) 225, 229
AluBI AGCT 3 cut(s) 26, 108, 362
AluI AGCT 3 cut(s) 26, 108, 362
AlwI GGATC 1 cut(s) 375
AspS9I GGNCC 1 cut(s) 40
AsuC2I CCSGG 1 cut(s) 226
AsuII TTCGAA 1 cut(s) 354
AvaII GGWCC 1 cut(s) 40
BcnI CCSGG 1 cut(s) 226
Bme1390I CCNGG 1 cut(s) 226
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 226
Bpu10I CCTNAGC 1 cut(s) 50
Bpu14I TTCGAA 1 cut(s) 354
BpuMI CCSGG 1 cut(s) 226
BsaJI CCNNGG 1 cut(s) 224
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 229
Bse1I ACTGG 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 224
BseLI CCNNNNNNNGG 2 cut(s) 225, 229
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 320
BseYI CCCAGC 1 cut(s) 362
BsiSI CCGG 1 cut(s) 226
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 2 cut(s) 225, 229
BsmFI GGGAC 1 cut(s) 188
Bsp119I TTCGAA 1 cut(s) 354
Bsp143I GATC 2 cut(s) 136, 367
BspCNI CTCAG 1 cut(s) 28
BspPI GGATC 1 cut(s) 375
BspT104I TTCGAA 1 cut(s) 354
BsrI ACTGG 1 cut(s) 320
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 2 cut(s) 136, 367
Bst4CI ACNGT 1 cut(s) 202
BstBI TTCGAA 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 2 cut(s) 36, 50
BstKTI GATC 2 cut(s) 139, 370
BstMBI GATC 2 cut(s) 136, 367
BstNSI RCATGY 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
Cac8I GCNNGC 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 40
Csp6I GTAC 1 cut(s) 103
CviAII CATG 2 cut(s) 117, 264
CviJI RGCY 3 cut(s) 26, 108, 362
CviKI_1 RGCY 3 cut(s) 26, 108, 362
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 2 cut(s) 36, 50
DpnI GATC 2 cut(s) 138, 369
DpnII GATC 2 cut(s) 136, 367
Eco47I GGWCC 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 6
FaeI CATG 2 cut(s) 120, 267
FalI AAGNNNNNCTT 2 cut(s) 92, 124
FaqI GGGAC 1 cut(s) 188
FatI CATG 2 cut(s) 116, 263
GsaI CCCAGC 1 cut(s) 366
HapII CCGG 1 cut(s) 226
Hin1II CATG 2 cut(s) 120, 267
HinfI GANTC 1 cut(s) 187
HpaII CCGG 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 10, 37
HpyAV CCTTC 1 cut(s) 201
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 2 cut(s) 36, 50
Hsp92II CATG 2 cut(s) 120, 267
Kzo9I GATC 2 cut(s) 136, 367
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 6 cut(s) 226, 239, 331, 333, 348, 372
MaeIII GTNAC 1 cut(s) 322
MalI GATC 2 cut(s) 138, 369
MboI GATC 2 cut(s) 136, 367
MflI RGATCY 1 cut(s) 367
MluCI AATT 3 cut(s) 15, 257, 309
MnlI CCTC 3 cut(s) 31, 78, 167
MseI TTAA 3 cut(s) 122, 146, 330
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 1 cut(s) 226
MspR9I CCNGG 1 cut(s) 226
NciI CCSGG 1 cut(s) 226
NdeII GATC 2 cut(s) 136, 367
NlaIII CATG 2 cut(s) 120, 267
NspI RCATGY 1 cut(s) 120
NspV TTCGAA 1 cut(s) 354
PaeI GCATGC 1 cut(s) 120
PfeI GAWTC 1 cut(s) 187
PsiI TTATAA 2 cut(s) 252, 315
PspFI CCCAGC 1 cut(s) 362
PspPI GGNCC 1 cut(s) 40
PsuI RGATCY 1 cut(s) 367
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SaqAI TTAA 3 cut(s) 122, 146, 330
Sau3AI GATC 2 cut(s) 136, 367
Sau96I GGNCC 1 cut(s) 40
ScrFI CCNGG 1 cut(s) 226
SetI ASST 6 cut(s) 28, 110, 135, 153, 178, 364
SfuI TTCGAA 1 cut(s) 354
SinI GGWCC 1 cut(s) 40
SphI GCATGC 1 cut(s) 120
Sse9I AATT 3 cut(s) 15, 257, 309
SspI AATATT 1 cut(s) 248
StyD4I CCNGG 1 cut(s) 224
TaaI ACNGT 1 cut(s) 202
TaqI TCGA 1 cut(s) 354
TasI AATT 3 cut(s) 15, 257, 309
TatI WGTACW 1 cut(s) 102
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 3 cut(s) 122, 146, 330
Tru9I TTAA 3 cut(s) 122, 146, 330
TspDTI ATGAA 1 cut(s) 27
VpaK11BI GGWCC 1 cut(s) 40
XceI RCATGY 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.