Rh1BG318800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
45270471 .. 45282893
12423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG318800.1

Sequence Viewer

Length: 342 bp
ATGGTGAAGCACCATCGGGTTTTTGAGACCGCTGAACATTGGTACGAAAACTTCCGAGAAAAAAAAAGGTTAGATGATGACTTCTATAGAATTTTAAATAAAATAGGACCAACGTTAGAGTCTCGGTACAAGAGGACTAAATCTATTGGTGATATAAAGAAGGACATAGTTATTACAGATGATGACCAAATATTCTTTTGGAATTGGGTTCCAAAAAGTAAGGATTTTAAGACGGAAGTTAAGGTCCTTGACCAATTTCTTATGGATATAAAGACGCTTGTCATTAATCATAGCCGTCTTGATGCATTGGCAAAAGAAGAAAGAGACGTGGCACACCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.69

Weight (kDa)

7.96

Isoelectric Point (pI)

19.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 30
AclI AACGTT 1 cut(s) 113
AcsI RAATTY 1 cut(s) 90
AfaI GTAC 2 cut(s) 44, 128
AjiI CACGTC 1 cut(s) 328
Alw26I GTCTC 3 cut(s) 20, 126, 318
ApoI RAATTY 1 cut(s) 90
AseI ATTAAT 1 cut(s) 285
AspS9I GGNCC 2 cut(s) 107, 244
AsuHPI GGTGA 2 cut(s) 16, 161
AvaII GGWCC 2 cut(s) 107, 244
BarI GAAGNNNNNNTAC 2 cut(s) 35, 67
BccI CCATC 1 cut(s) 21
BceAI ACGGC 1 cut(s) 279
BcoDI GTCTC 3 cut(s) 20, 126, 318
BfmI CTRYAG 1 cut(s) 85
Bme18I GGWCC 2 cut(s) 107, 244
BmgBI CACGTC 1 cut(s) 328
BmgT120I GGNCC 2 cut(s) 107, 244
BmiI GGNNCC 1 cut(s) 210
BmsI GCATC 1 cut(s) 292
BoxI GACNNNNGTC 1 cut(s) 278
BsaI GGTCTC 1 cut(s) 20
BsmAI GTCTC 3 cut(s) 20, 126, 318
BsmBI CGTCTC 1 cut(s) 318
Bso31I GGTCTC 1 cut(s) 20
BspACI CCGC 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 210
BspTNI GGTCTC 1 cut(s) 20
BstMAI GTCTC 3 cut(s) 20, 126, 318
BstPAI GACNNNNGTC 1 cut(s) 278
BstSFI CTRYAG 1 cut(s) 85
BtrI CACGTC 1 cut(s) 328
Cfr13I GGNCC 2 cut(s) 107, 244
CseI GACGC 1 cut(s) 283
Csp6I GTAC 2 cut(s) 43, 127
CviAII CATG 1 cut(s) 339
CviJI RGCY 1 cut(s) 294
CviKI_1 RGCY 1 cut(s) 294
CviQI GTAC 2 cut(s) 43, 127
DraI TTTAAA 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 20
Eco47I GGWCC 2 cut(s) 107, 244
EcoO109I RGGNCCY 1 cut(s) 244
EcoT22I ATGCAT 1 cut(s) 307
Esp3I CGTCTC 1 cut(s) 318
FaeI CATG 1 cut(s) 342
FaiI YATR 7 cut(s) 87, 155, 167, 263, 269, 291, 340
FatI CATG 1 cut(s) 338
HgaI GACGC 1 cut(s) 283
Hin1II CATG 1 cut(s) 342
HinfI GANTC 1 cut(s) 119
HphI GGTGA 2 cut(s) 16, 161
Hpy188I TCNGA 1 cut(s) 56
Hpy188III TCNNGA 1 cut(s) 299
HpyAV CCTTC 1 cut(s) 154
HpyCH4IV ACGT 2 cut(s) 113, 327
HpyCH4V TGCA 1 cut(s) 305
HpySE526I ACGT 2 cut(s) 113, 327
Hsp92II CATG 1 cut(s) 342
LweI GCATC 1 cut(s) 292
MaeII ACGT 2 cut(s) 113, 327
MboII GAAGA 1 cut(s) 329
MluCI AATT 3 cut(s) 90, 202, 254
MlyI GAGTC 1 cut(s) 128
MnlI CCTC 1 cut(s) 126
Mph1103I ATGCAT 1 cut(s) 307
MseI TTAA 4 cut(s) 95, 228, 240, 285
MslI CAYNNNNRTG 1 cut(s) 337
MspA1I CMGCKG 1 cut(s) 32
NlaIII CATG 1 cut(s) 342
NlaIV GGNNCC 1 cut(s) 210
NsiI ATGCAT 1 cut(s) 307
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
PpuMI RGGWCCY 1 cut(s) 244
PshAI GACNNNNGTC 1 cut(s) 278
PshBI ATTAAT 1 cut(s) 285
Psp1406I AACGTT 1 cut(s) 113
Psp5II RGGWCCY 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 210
PspPI GGNCC 2 cut(s) 107, 244
PspPPI RGGWCCY 1 cut(s) 244
RsaI GTAC 2 cut(s) 44, 128
RsaNI GTAC 2 cut(s) 43, 127
RseI CAYNNNNRTG 1 cut(s) 337
SaqAI TTAA 4 cut(s) 95, 228, 240, 285
Sau96I GGNCC 2 cut(s) 107, 244
SchI GAGTC 1 cut(s) 128
SetI ASST 4 cut(s) 71, 116, 246, 330
SfaNI GCATC 1 cut(s) 292
SfcI CTRYAG 1 cut(s) 85
SgeI CNNG 7 cut(s) 29, 68, 135, 142, 260, 290, 311
SinI GGWCC 2 cut(s) 107, 244
SmiMI CAYNNNNRTG 1 cut(s) 337
Sse9I AATT 3 cut(s) 90, 202, 254
SsiI CCGC 1 cut(s) 30
SspI AATATT 1 cut(s) 192
TaiI ACGT 2 cut(s) 116, 330
TasI AATT 3 cut(s) 90, 202, 254
Tru1I TTAA 4 cut(s) 95, 228, 240, 285
Tru9I TTAA 4 cut(s) 95, 228, 240, 285
TspGWI ACGGA 1 cut(s) 248
VpaK11BI GGWCC 2 cut(s) 107, 244
VspI ATTAAT 1 cut(s) 285
XapI RAATTY 1 cut(s) 90
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.