Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0012618

Physical Location & Seq

Genomic Coordinates Reverse (-)

58595207 .. 58602503

Gene Structure 7297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG311900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAGGTCCAAAGCCATAGATCAAACCGTCTTTGCAGGAAGCCACATGCTGAGTGTAAGGATATTGACGAAAGGGCTGGCGACGCCAACGCAGCCTCCTTTCTTGCAAGTCCAAGTACTCATATTCCCTAGCCGGTTCAGTATGGTAGGGCGGACATGCCCCAACGGGTTCCGGACGTCTATTATTACTTTTAGAACCACCGAACAGGTACAATTTGGAGTTGATGACCAGAAGGCTGCGTGGAAAGCGCTGGTCACTAGGTCAGATGTTGATCTATACAGGATGTTTAGGAAAGTTGGACCAGCATTGGCGTACCGGTATGAGCAAACGGATTCTATTGGTAATATATTCAAGGATACAGTTATCACGGATAATGGACAAGTTGTCTTTTGGAACTGGGCTCCAGGAAGTAAACAATTTAAGAAAGAAATTAGACAGCTCAGATACTTTGTGAAAGTAATGAAGAAGCTGGCGACAAGTCCTGATCGTTTTAATAAGTTCGAGGACTTCCTCTCAATACATGTTATGCATAATTCGGCACCGCGTAAGGAGTTAATAATGTGGTTGTTCCATTATCCTGTATTCATGACTGAACAAGGGGGTGTGAGGTTTCTTGAAGCCTTGAATAAGATTACGTGTGATCATAGAAGTGGAGTAAAAAAAGCTGTTGAATTCAAAGATGCACTACAATGTTTTGATAACAATTGGAAGAATGTTGTGACTGCAAGTTCCGATGATGCTTTGAAGGCTGTTTTGAATTACAAATTAAGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

29.71

Weight (kDa)

9.85

Isoelectric Point (pI)

35.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012618)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09360 FvH4_5g09360 FvH4_5g09360 FvH4_5g09360 FvH4_5g09360 FvH4_6g42270
rosa_chinensis	RchiOBHm_Chr3g0454911
rosa_laevigata	RLG00000027153
rosa_multiflora	Rmu_sc0000152.1_g000003
rosa_roxburghii	Rroxscaffold_1G00042560 Rroxscaffold_2G00122110 Rroxscaffold_4G00287830 Rroxscaffold_4G00287950 Rroxscaffold_4G00317020
rosa_rugosa	Rorug01G0348400 Rorug04G0211500
rosa_samantha	Rh1BG318800 Rh1CG311900 Rh4CG288500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	179
AccB1I	GGYRCC	1 cut(s)	538
AccII	CGCG	1 cut(s)	544
AccIII	TCCGGA	1 cut(s)	171
AciI	CCGC	2 cut(s)	151, 542
AcsI	RAATTY	1 cut(s)	671
AcyI	GRCGYC	2 cut(s)	83, 176
AfaI	GTAC	3 cut(s)	117, 210, 314
AfeI	AGCGCT	1 cut(s)	249
AflIII	ACRYGT	2 cut(s)	520, 635
AgeI	ACCGGT	1 cut(s)	315
AgsI	TTSAA	7 cut(s)	352, 617, 625, 671, 676, 745, 757
AhdI	GACNNNNNGTC	1 cut(s)	383
AjnI	CCWGG	1 cut(s)	403
AluBI	AGCT	4 cut(s)	439, 469, 665, 774
AluI	AGCT	4 cut(s)	439, 469, 665, 774
Aor13HI	TCCGGA	1 cut(s)	171
Aor51HI	AGCGCT	1 cut(s)	249
ApeKI	GCWGC	2 cut(s)	91, 236
ApoI	RAATTY	1 cut(s)	671
AsiGI	ACCGGT	1 cut(s)	315
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	2 cut(s)	6, 299
AvaII	GGWCC	2 cut(s)	6, 299
BanI	GGYRCC	1 cut(s)	538
BanII	GRGCYC	1 cut(s)	403
BbvI	GCAGC	2 cut(s)	103, 223
BciT130I	CCWGG	1 cut(s)	405
BciVI	GTATCC	1 cut(s)	349
BclI	TGATCA	1 cut(s)	640
BfaI	CTAG	2 cut(s)	129, 258
BfoI	RGCGCY	1 cut(s)	251
BfuI	GTATCC	1 cut(s)	349
BisI	GCNGC	2 cut(s)	92, 237
BlsI	GCNGC	2 cut(s)	93, 238
BmcAI	AGTACT	1 cut(s)	117
Bme1390I	CCNGG	1 cut(s)	405
Bme18I	GGWCC	2 cut(s)	6, 299
BmeRI	GACNNNNNGTC	1 cut(s)	383
BmgT120I	GGNCC	2 cut(s)	6, 299
BmiI	GGNNCC	3 cut(s)	170, 402, 540
BmrFI	CCNGG	1 cut(s)	405
BmrI	ACTGGG	1 cut(s)	406
BmsI	GCATC	2 cut(s)	670, 727
BmuI	ACTGGG	1 cut(s)	406
BpmI	CTGGAG	1 cut(s)	387
BsaAI	YACGTR	1 cut(s)	636
BsaBI	GATNNNNATC	1 cut(s)	270
BsaHI	GRCGYC	2 cut(s)	83, 176
BsaWI	WCCGGW	2 cut(s)	171, 315
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bse118I	RCCGGY	2 cut(s)	132, 315
Bse1I	ACTGG	1 cut(s)	401
Bse8I	GATNNNNATC	1 cut(s)	270
BseAI	TCCGGA	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	405
BseGI	GGATG	1 cut(s)	288
BseJI	GATNNNNATC	1 cut(s)	270
BseMII	CTCAG	2 cut(s)	41, 454
BseNI	ACTGG	1 cut(s)	401
BseXI	GCAGC	2 cut(s)	103, 223
Bsh1236I	CGCG	1 cut(s)	544
BshNI	GGYRCC	1 cut(s)	538
BshTI	ACCGGT	1 cut(s)	315
BsiSI	CCGG	3 cut(s)	133, 172, 316
Bsp1286I	GDGCHC	1 cut(s)	403
Bsp13I	TCCGGA	1 cut(s)	171
Bsp143I	GATC	4 cut(s)	19, 271, 484, 640
BspACI	CCGC	2 cut(s)	151, 542
BspCNI	CTCAG	2 cut(s)	42, 453
BspEI	TCCGGA	1 cut(s)	171
BspFNI	CGCG	1 cut(s)	544
BspHI	TCATGA	1 cut(s)	585
BspLI	GGNNCC	3 cut(s)	170, 402, 540
BspT107I	GGYRCC	1 cut(s)	538
BsrFI	RCCGGY	2 cut(s)	132, 315
BsrI	ACTGG	1 cut(s)	401
BssAI	RCCGGY	2 cut(s)	132, 315
BssMI	GATC	4 cut(s)	19, 271, 484, 640
BssNI	GRCGYC	2 cut(s)	83, 176
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	2 cut(s)	28, 361
BstACI	GRCGYC	2 cut(s)	83, 176
BstBAI	YACGTR	1 cut(s)	636
BstC8I	GCNNGC	2 cut(s)	78, 471
BstDEI	CTNAG	2 cut(s)	50, 440
BstF5I	GGATG	1 cut(s)	288
BstFNI	CGCG	1 cut(s)	544
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	4 cut(s)	22, 274, 487, 643
BstMBI	GATC	4 cut(s)	19, 271, 484, 640
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 91, 245, 746
BstNI	CCWGG	1 cut(s)	405
BstNSI	RCATGY	3 cut(s)	49, 159, 524
BstSCI	CCNGG	1 cut(s)	403
BstUI	CGCG	1 cut(s)	544
BstV1I	GCAGC	2 cut(s)	103, 223
BsuI	GTATCC	1 cut(s)	349
BtsCI	GGATG	1 cut(s)	288
Cac8I	GCNNGC	2 cut(s)	78, 471
CciI	TCATGA	1 cut(s)	585
CfoI	GCGC	1 cut(s)	250
Cfr10I	RCCGGY	2 cut(s)	132, 315
Cfr13I	GGNCC	2 cut(s)	6, 299
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	3 cut(s)	116, 209, 313
CspAI	ACCGGT	1 cut(s)	315
CviAII	CATG	4 cut(s)	46, 156, 521, 586
CviQI	GTAC	3 cut(s)	116, 209, 313
DdeI	CTNAG	2 cut(s)	50, 440
DpnI	GATC	4 cut(s)	21, 273, 486, 642
DpnII	GATC	4 cut(s)	19, 271, 484, 640
DriI	GACNNNNNGTC	1 cut(s)	383
Eam1105I	GACNNNNNGTC	1 cut(s)	383
EciI	GGCGGA	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	403
Eco47I	GGWCC	2 cut(s)	6, 299
Eco47III	AGCGCT	1 cut(s)	249
EcoRI	GAATTC	1 cut(s)	671
EcoRII	CCWGG	1 cut(s)	403
EcoT22I	ATGCAT	1 cut(s)	531
EcoT38I	GRGCYC	1 cut(s)	403
FaeI	CATG	4 cut(s)	49, 159, 524, 589
FatI	CATG	4 cut(s)	45, 155, 520, 585
FbaI	TGATCA	1 cut(s)	640
Fnu4HI	GCNGC	2 cut(s)	92, 237
FokI	GGATG	1 cut(s)	295
FriOI	GRGCYC	1 cut(s)	403
Fsp4HI	GCNGC	2 cut(s)	92, 237
FspBI	CTAG	2 cut(s)	129, 258
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	2 cut(s)	92, 237
GsuI	CTGGAG	1 cut(s)	387
HaeII	RGCGCY	1 cut(s)	251
HapII	CCGG	3 cut(s)	133, 172, 316
HgaI	GACGC	1 cut(s)	91
HhaI	GCGC	1 cut(s)	250
Hin1I	GRCGYC	2 cut(s)	83, 176
Hin1II	CATG	4 cut(s)	49, 159, 524, 589
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HinfI	GANTC	1 cut(s)	332
HpaII	CCGG	3 cut(s)	133, 172, 316
Hpy166II	GTNNAC	1 cut(s)	413
Hpy188I	TCNGA	3 cut(s)	265, 443, 733
Hpy188III	TCNNGA	4 cut(s)	172, 482, 586, 614
Hpy8I	GTNNAC	1 cut(s)	413
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	226, 739
HpyCH4III	ACNGT	2 cut(s)	28, 361
HpyCH4IV	ACGT	2 cut(s)	176, 635
HpyCH4V	TGCA	5 cut(s)	35, 106, 529, 683, 725
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 91, 245, 746
HpyF3I	CTNAG	2 cut(s)	50, 440
HpySE526I	ACGT	2 cut(s)	176, 635
Hsp92I	GRCGYC	2 cut(s)	83, 176
Hsp92II	CATG	4 cut(s)	49, 159, 524, 589
HspAI	GCGC	1 cut(s)	248
Kpn2I	TCCGGA	1 cut(s)	171
Ksp22I	TGATCA	1 cut(s)	640
Kzo9I	GATC	4 cut(s)	19, 271, 484, 640
LmnI	GCTCC	2 cut(s)	406, 771
Lsp1109I	GCAGC	2 cut(s)	103, 223
LweI	GCATC	2 cut(s)	670, 727
MaeI	CTAG	2 cut(s)	129, 258
MaeII	ACGT	2 cut(s)	176, 635
MaeIII	GTNAC	2 cut(s)	253, 718
MalI	GATC	4 cut(s)	21, 273, 486, 642
MboI	GATC	4 cut(s)	19, 271, 484, 640
MboII	GAAGA	2 cut(s)	475, 721
MfeI	CAATTG	1 cut(s)	703
MhlI	GDGCHC	1 cut(s)	403
MluCI	AATT	8 cut(s)	212, 416, 429, 532, 671, 703, 757, 764
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	4 cut(s)	105, 496, 521, 600
Mph1103I	ATGCAT	1 cut(s)	531
MroI	TCCGGA	1 cut(s)	171
MseI	TTAA	4 cut(s)	420, 492, 554, 767
MslI	CAYNNNNRTG	2 cut(s)	648, 688
MspI	CCGG	3 cut(s)	133, 172, 316
MspR9I	CCNGG	1 cut(s)	405
MunI	CAATTG	1 cut(s)	703
MvaI	CCWGG	1 cut(s)	405
MvnI	CGCG	1 cut(s)	544
MwoI	GCNNNNNNNGC	4 cut(s)	82, 91, 245, 746
NdeII	GATC	4 cut(s)	19, 271, 484, 640
NlaIII	CATG	4 cut(s)	49, 159, 524, 589
NlaIV	GGNNCC	3 cut(s)	170, 402, 540
NmuCI	GTSAC	2 cut(s)	253, 718
NsiI	ATGCAT	1 cut(s)	531
NspI	RCATGY	3 cut(s)	49, 159, 524
PagI	TCATGA	1 cut(s)	585
PciI	ACATGT	1 cut(s)	520
PfeI	GAWTC	1 cut(s)	332
PfoI	TCCNGGA	1 cut(s)	403
PinAI	ACCGGT	1 cut(s)	315
PkrI	GCNGC	2 cut(s)	93, 238
Ppu21I	YACGTR	1 cut(s)	636
PscI	ACATGT	1 cut(s)	520
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	3 cut(s)	170, 402, 540
PspPI	GGNCC	2 cut(s)	6, 299
RsaI	GTAC	3 cut(s)	117, 210, 314
RsaNI	GTAC	3 cut(s)	116, 209, 313
RseI	CAYNNNNRTG	2 cut(s)	648, 688
SaqAI	TTAA	4 cut(s)	420, 492, 554, 767
SatI	GCNGC	2 cut(s)	92, 237
Sau3AI	GATC	4 cut(s)	19, 271, 484, 640
Sau96I	GGNCC	2 cut(s)	6, 299
ScaI	AGTACT	1 cut(s)	117
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	1 cut(s)	403
SfaNI	GCATC	2 cut(s)	670, 727
SinI	GGWCC	2 cut(s)	6, 299
SmiMI	CAYNNNNRTG	2 cut(s)	648, 688
Sse9I	AATT	8 cut(s)	212, 416, 429, 532, 671, 703, 757, 764
SsiI	CCGC	2 cut(s)	151, 542
SspMI	CTAG	2 cut(s)	129, 258
StyD4I	CCNGG	1 cut(s)	403
TaaI	ACNGT	2 cut(s)	28, 361
TaiI	ACGT	2 cut(s)	179, 638
TaqI	TCGA	1 cut(s)	501
TasI	AATT	8 cut(s)	212, 416, 429, 532, 671, 703, 757, 764
TatI	WGTACW	1 cut(s)	115
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	4 cut(s)	420, 492, 554, 767
Tru9I	TTAA	4 cut(s)	420, 492, 554, 767
TseFI	GTSAC	2 cut(s)	253, 718
TseI	GCWGC	2 cut(s)	91, 236
Tsp45I	GTSAC	2 cut(s)	253, 718
TspDTI	ATGAA	2 cut(s)	476, 574
TspGWI	ACGGA	2 cut(s)	344, 383
VpaK11BI	GGWCC	2 cut(s)	6, 299
XapI	RAATTY	1 cut(s)	671
XceI	RCATGY	3 cut(s)	49, 159, 524
XspI	CTAG	2 cut(s)	129, 258
ZraI	GACGTC	1 cut(s)	177
ZrmI	AGTACT	1 cut(s)	117
Zsp2I	ATGCAT	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.