Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000152.1

Orthogroup ID

OG0012618

Physical Location & Seq

Genomic Coordinates Reverse (-)

11579 .. 13046

Gene Structure 1468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000152.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atggtaagaaatgcaggcattgacggacagggagatatgaagttcatttatgggacaaagggtcttggcatccaacataagggaataagggaaagcaagtttatctggcttattctcccctttttggatttggacattaagtactttgaccttggtcttcctcaccatgataccactgatgataaagttaccgttgaaagtgcagaggctactcttaataagaggattagaatggggctgctccagctagaagtgttctggtgtggatcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004450 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006102 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009117 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019752 GO:0030054 GO:0034641 GO:0042221 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072350 GO:0072524 GO:0098542 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

90

Amino Acids

10.22

Weight (kDa)

6.25

Isoelectric Point (pI)

27.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012618)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g09360 FvH4_5g09360 FvH4_5g09360 FvH4_5g09360 FvH4_5g09360 FvH4_6g42270
rosa_chinensis	RchiOBHm_Chr3g0454911
rosa_laevigata	RLG00000027153
rosa_multiflora	Rmu_sc0000152.1_g000003
rosa_roxburghii	Rroxscaffold_1G00042560 Rroxscaffold_2G00122110 Rroxscaffold_4G00287830 Rroxscaffold_4G00287950 Rroxscaffold_4G00317020
rosa_rugosa	Rorug01G0348400 Rorug04G0211500
rosa_samantha	Rh1BG318800 Rh1CG311900 Rh4CG288500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	261
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	79, 124
AgsI	TTSAA	1 cut(s)	197
AhdI	GACNNNNNGTC	1 cut(s)	60
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
AlwI	GGATC	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	238
AsuHPI	GGTGA	1 cut(s)	155
BamHI	GGATCC	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	225
BfaI	CTAG	1 cut(s)	248
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
BmcAI	AGTACT	1 cut(s)	143
BmeRI	GACNNNNNGTC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	268
BmsI	GCATC	1 cut(s)	78
BoxI	GACNNNNGTC	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	149
BpmI	CTGGAG	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 124
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	1 cut(s)	69
BseLI	CCNNNNNNNGG	2 cut(s)	79, 124
BseXI	GCAGC	1 cut(s)	225
BsgI	GTGCAG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	2 cut(s)	79, 124
BsmFI	GGGAC	1 cut(s)	67
Bsp143I	GATC	1 cut(s)	266
BspLI	GGNNCC	1 cut(s)	268
BspPI	GGATC	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	1 cut(s)	266
BssT1I	CCWWGG	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	193
BstC8I	GCNNGC	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	69
BstKTI	GATC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	1 cut(s)	244
BstPAI	GACNNNNGTC	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	225
BstV2I	GAAGAC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	1 cut(s)	167
CviJI	RGCY	4 cut(s)	109, 209, 238, 247
CviKI_1	RGCY	4 cut(s)	109, 209, 238, 247
CviQI	GTAC	1 cut(s)	142
DpnI	GATC	1 cut(s)	268
DpnII	GATC	1 cut(s)	266
DriI	GACNNNNNGTC	1 cut(s)	60
Eam1105I	GACNNNNNGTC	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	1 cut(s)	170
FaiI	YATR	4 cut(s)	38, 51, 78, 168
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	239
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	1 cut(s)	239
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	1 cut(s)	239
GsuI	CTGGAG	1 cut(s)	227
Hin1II	CATG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	155
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4V	TGCA	2 cut(s)	14, 203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	244
Hsp92II	CATG	1 cut(s)	170
Kzo9I	GATC	1 cut(s)	266
LmnI	GCTCC	1 cut(s)	246
LpnPI	CCDG	4 cut(s)	14, 91, 244, 257
Lsp1109I	GCAGC	1 cut(s)	225
LweI	GCATC	1 cut(s)	78
MaeI	CTAG	1 cut(s)	248
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	1 cut(s)	268
MboI	GATC	1 cut(s)	266
MboII	GAAGA	1 cut(s)	149
MflI	RGATCY	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	3 cut(s)	171, 199, 216
MseI	TTAA	2 cut(s)	138, 216
MwoI	GCNNNNNNNGC	1 cut(s)	244
NdeII	GATC	1 cut(s)	266
NlaIII	CATG	1 cut(s)	170
NlaIV	GGNNCC	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	240
PshAI	GACNNNNGTC	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	266
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SaqAI	TTAA	2 cut(s)	138, 216
SatI	GCNGC	1 cut(s)	239
Sau3AI	GATC	1 cut(s)	266
ScaI	AGTACT	1 cut(s)	143
SetI	ASST	2 cut(s)	153, 249
SfaNI	GCATC	1 cut(s)	78
SgeI	CNNG	9 cut(s)	27, 41, 77, 109, 118, 164, 179, 256, 260
SspMI	CTAG	1 cut(s)	248
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	193
TatI	WGTACW	1 cut(s)	141
Tru1I	TTAA	2 cut(s)	138, 216
Tru9I	TTAA	2 cut(s)	138, 216
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	34, 53
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	1 cut(s)	181
XspI	CTAG	1 cut(s)	248
ZrmI	AGTACT	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.