Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010102

Physical Location & Seq

Genomic Coordinates Reverse (-)

9375796 .. 9378325

Gene Structure 2530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g16490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCATTGAGAGCAGCAGCATGTACTGGTATTGGAAGGCAAAGACATTCATGTCTGTTATCGGTTCCGCGATATCTTCAGCTTCAGGCTCATCTGCATCACTCTGCTGCTCCTCCTCAGAGGTTGACGTCATTTCCAATTCATCAATCTGGGTTTAAATTTGGAATAAGAGCTATAAGTGAAGCGGCTGCGAATCCAATTACTCCCAAGAAAGAAAATGAAAGAGAATCAACACCTGAGAATTGGAAGATTAAGATGCTTTATGATGGGGATTGTCCACTATGTATGAGAGAGGTGAACATGCTAAGAGAGAGAAACAAGAGCTATGGTACTATCAAGTTTGTTGATATAAGCTCAGAGGACTACTCTCCGGAGGATAATCTGGGGCTAGATTACAAAACTGTTATGGGAAACATTCATGCCATCCTCTCTGATGGAACCGTAGTCACTGATGTTGAAGCCTTCAGAAAGTTATATGAGCAAGTTGGGCTAGGATGGGTTTATGCAATAACCAAATATGAACCTATTGGAACAATTGCAGGTGCTGTTTATAGTGTTTGGGCTAAATATCGTCTCCAAATCACAGGCCGACCACCTTTAGAAGAGGTTTTGGAATTGCGGAAGAAGAGCAAGGGAGAAGTATGTAATGACAGAACCGATTGTAAACTACCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0009888 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0031099 GO:0032502 GO:0040007 GO:0042060 GO:0042246 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048589 GO:0048856 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF393

Protein Analysis

226

Amino Acids

25.36

Weight (kDa)

8.82

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DCC1-like	PF04134	87 - 197	8.1e-25	DCC1-like thiol-disulfide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50100
fragaria_vesca	FvH4_5g16490
malus_domestica	MD06G1180000.v1.1 MD06G1180300.v1.1 MD14G1185400.v1.1
prunus_persica	Prupe.5G178100_v2.0.a1
pyrus_communis	pycom06g15960 pycom14g15430 pycom14g15890
rosa_chinensis	RchiOBHm_Chr7g0179601
rosa_laevigata	RLG00000005340
rosa_multiflora	Rmu_co8321565.1_g000001 Rmu_sc0005329.1_g000024
rosa_roxburghii	Rroxscaffold_155G00443890 Rroxscaffold_3G00273620
rosa_rugosa	Rorug06G0426500
rosa_samantha	Rh7AG025900 Rh7BG025200 Rh7CG026900 Rh7DG026500
rosa_wichuraiana	Rw7G002080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	530
AasI	GACNNNNNNGTC	1 cut(s)	51
AatII	GACGTC	1 cut(s)	131
Acc36I	ACCTGC	1 cut(s)	530
AccII	CGCG	1 cut(s)	70
AccIII	TCCGGA	1 cut(s)	370
AciI	CCGC	3 cut(s)	68, 185, 619
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	3 cut(s)	62, 68, 448
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	2 cut(s)	25, 331
AgsI	TTSAA	1 cut(s)	458
AluBI	AGCT	4 cut(s)	82, 173, 324, 354
AluI	AGCT	4 cut(s)	82, 173, 324, 354
Alw26I	GTCTC	1 cut(s)	578
AlwNI	CAGNNNCTG	1 cut(s)	545
Aor13HI	TCCGGA	1 cut(s)	370
AoxI	GGCC	1 cut(s)	586
ApeKI	GCWGC	4 cut(s)	14, 17, 107, 188
ApoI	RAATTY	1 cut(s)	158
AsuHPI	GGTGA	1 cut(s)	307
BbvI	GCAGC	4 cut(s)	26, 29, 94, 175
BccI	CCATC	4 cut(s)	260, 428, 431, 489
BcoDI	GTCTC	1 cut(s)	578
BfaI	CTAG	2 cut(s)	389, 491
BfuAI	ACCTGC	1 cut(s)	530
BisI	GCNGC	5 cut(s)	15, 18, 108, 186, 189
BlsI	GCNGC	5 cut(s)	16, 19, 109, 187, 190
BmiI	GGNNCC	2 cut(s)	66, 439
BmsI	GCATC	2 cut(s)	106, 246
BplI	GAGNNNNNCTC	2 cut(s)	350, 382
BsaHI	GRCGYC	1 cut(s)	128
BsaWI	WCCGGW	1 cut(s)	370
Bse1I	ACTGG	1 cut(s)	31
BseAI	TCCGGA	1 cut(s)	370
BseGI	GGATG	2 cut(s)	423, 500
BseMII	CTCAG	3 cut(s)	131, 228, 369
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	2 cut(s)	102, 105
BseXI	GCAGC	4 cut(s)	26, 29, 94, 175
Bsh1236I	CGCG	1 cut(s)	70
BshFI	GGCC	1 cut(s)	588
BsiSI	CCGG	1 cut(s)	371
BsmAI	GTCTC	1 cut(s)	578
BsmBI	CGTCTC	1 cut(s)	578
BsnI	GGCC	1 cut(s)	588
Bsp13I	TCCGGA	1 cut(s)	370
BspACI	CCGC	3 cut(s)	68, 185, 619
BspANI	GGCC	1 cut(s)	588
BspCNI	CTCAG	3 cut(s)	130, 229, 368
BspEI	TCCGGA	1 cut(s)	370
BspFNI	CGCG	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	66, 439
BspMI	ACCTGC	1 cut(s)	530
BspQI	GCTCTTC	1 cut(s)	620
BsrI	ACTGG	1 cut(s)	31
BssNI	GRCGYC	1 cut(s)	128
Bst4CI	ACNGT	2 cut(s)	403, 442
Bst6I	CTCTTC	2 cut(s)	597, 620
BstACI	GRCGYC	1 cut(s)	128
BstDEI	CTNAG	4 cut(s)	117, 237, 305, 355
BstF5I	GGATG	2 cut(s)	423, 500
BstFNI	CGCG	1 cut(s)	70
BstMAI	GTCTC	1 cut(s)	578
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 487
BstNSI	RCATGY	2 cut(s)	24, 304
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	4 cut(s)	26, 29, 94, 175
BsuRI	GGCC	1 cut(s)	588
BtsCI	GGATG	2 cut(s)	423, 500
BtsIMutI	CAGTG	1 cut(s)	447
BveI	ACCTGC	1 cut(s)	530
CaiI	CAGNNNCTG	1 cut(s)	545
Csp6I	GTAC	2 cut(s)	24, 330
CviAII	CATG	4 cut(s)	21, 51, 301, 419
CviQI	GTAC	2 cut(s)	24, 330
DdeI	CTNAG	4 cut(s)	117, 237, 305, 355
DraI	TTTAAA	1 cut(s)	157
DrdI	GACNNNNNNGTC	1 cut(s)	51
DseDI	GACNNNNNNGTC	1 cut(s)	51
Eam1104I	CTCTTC	2 cut(s)	597, 620
EarI	CTCTTC	2 cut(s)	597, 620
Eco32I	GATATC	1 cut(s)	74
Eco57I	CTGAAG	3 cut(s)	62, 68, 448
EcoRV	GATATC	1 cut(s)	74
Esp3I	CGTCTC	1 cut(s)	578
FaeI	CATG	4 cut(s)	24, 54, 304, 422
FatI	CATG	4 cut(s)	20, 50, 300, 418
Fnu4HI	GCNGC	5 cut(s)	15, 18, 108, 186, 189
FokI	GGATG	2 cut(s)	410, 507
Fsp4HI	GCNGC	5 cut(s)	15, 18, 108, 186, 189
FspBI	CTAG	2 cut(s)	389, 491
GluI	GCNGC	5 cut(s)	15, 18, 108, 186, 189
HaeIII	GGCC	1 cut(s)	588
HapII	CCGG	1 cut(s)	371
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	4 cut(s)	24, 54, 304, 422
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HinfI	GANTC	2 cut(s)	193, 227
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	4 cut(s)	126, 278, 298, 665
Hpy188I	TCNGA	4 cut(s)	120, 358, 433, 467
Hpy188III	TCNNGA	1 cut(s)	371
Hpy8I	GTNNAC	4 cut(s)	126, 278, 298, 665
HpyAV	CCTTC	2 cut(s)	30, 472
HpyCH4III	ACNGT	2 cut(s)	403, 442
HpyCH4IV	ACGT	1 cut(s)	128
HpyCH4V	TGCA	3 cut(s)	97, 506, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 487
HpyF3I	CTNAG	4 cut(s)	117, 237, 305, 355
HpySE526I	ACGT	1 cut(s)	128
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	4 cut(s)	24, 54, 304, 422
Kpn2I	TCCGGA	1 cut(s)	370
LguI	GCTCTTC	1 cut(s)	620
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	8 cut(s)	12, 71, 135, 249, 368, 384, 525, 570
Lsp1109I	GCAGC	4 cut(s)	26, 29, 94, 175
LweI	GCATC	2 cut(s)	106, 246
MaeI	CTAG	2 cut(s)	389, 491
MaeII	ACGT	1 cut(s)	128
MaeIII	GTNAC	1 cut(s)	445
MboII	GAAGA	5 cut(s)	68, 259, 614, 634, 637
MfeI	CAATTG	1 cut(s)	534
MluCI	AATT	6 cut(s)	138, 158, 198, 241, 534, 614
MnlI	CCTC	8 cut(s)	114, 123, 126, 286, 352, 367, 437, 598
MroI	TCCGGA	1 cut(s)	370
MseI	TTAA	2 cut(s)	156, 252
MspI	CCGG	1 cut(s)	371
MunI	CAATTG	1 cut(s)	534
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	2 cut(s)	11, 487
NlaIII	CATG	4 cut(s)	24, 54, 304, 422
NlaIV	GGNNCC	2 cut(s)	66, 439
NmuCI	GTSAC	1 cut(s)	445
NspI	RCATGY	2 cut(s)	24, 304
PaqCI	CACCTGC	1 cut(s)	530
PciSI	GCTCTTC	1 cut(s)	620
PfeI	GAWTC	2 cut(s)	193, 227
PkrI	GCNGC	5 cut(s)	16, 19, 109, 187, 190
PspN4I	GGNNCC	2 cut(s)	66, 439
PstNI	CAGNNNCTG	1 cut(s)	545
RsaI	GTAC	2 cut(s)	25, 331
RsaNI	GTAC	2 cut(s)	24, 330
SapI	GCTCTTC	1 cut(s)	620
SaqAI	TTAA	2 cut(s)	156, 252
SatI	GCNGC	5 cut(s)	15, 18, 108, 186, 189
SfaNI	GCATC	2 cut(s)	106, 246
Sse9I	AATT	6 cut(s)	138, 158, 198, 241, 534, 614
SsiI	CCGC	3 cut(s)	68, 185, 619
SspMI	CTAG	2 cut(s)	389, 491
TaaI	ACNGT	2 cut(s)	403, 442
TaiI	ACGT	1 cut(s)	131
TasI	AATT	6 cut(s)	138, 158, 198, 241, 534, 614
TatI	WGTACW	1 cut(s)	23
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	2 cut(s)	193, 227
Tru1I	TTAA	2 cut(s)	156, 252
Tru9I	TTAA	2 cut(s)	156, 252
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	4 cut(s)	14, 17, 107, 188
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	5 cut(s)	39, 131, 234, 407, 534
TspRI	CASTG	1 cut(s)	454
XapI	RAATTY	1 cut(s)	158
XceI	RCATGY	2 cut(s)	24, 304
XspI	CTAG	2 cut(s)	389, 491
ZraI	GACGTC	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.