Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0010102

Physical Location & Seq

Genomic Coordinates Forward (+)

2035761 .. 2038798

Gene Structure 3038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG026500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCTCTGAGAGCAGGGTGTAGTAGTATTGGAGGAAGGCAAAGATGTTCATCTCTGTTATCGGTTCCTCGATATCTACAGCTCCAGCCTCATCTGCCTCACTCTGCTCCTCAGAGGTTGACATCATTTCCAATTCATCAACCTGGGTCTAGATTTGGAATGAGAGCTATAAGTGAAGCGGCTGTGAATCCCGTAACTCCCAAGAAAGGAGATGAACGAGAATCAGCACCTGAGAATTGGAAGATTAAGATGCTGTATGATGGGGATTGTCCACTATGTATGAGAGAGGTGAATATGCTGAGAGAGAGAAGCAAGAGTTATGGTACTATCAAGTTTGTTGACATAAGCTCAGAGGATTACTCTCCAGAGGATAATATGGGGCTAGACTACAAAACTGTAAGTTTGTTCAAGGTTATGGGAAACATTCATGCCATCCTCTCTGATGGAACCGTAGTTACTGATGTCGAAGCATTCAGAAAGTTATATGAGCAAGTTGGGCTCGGATGGGTCTATGCAATAACCAAATATGAACCGATTGGAACCATAGCAGGTGCTGTTTATGGTGTTTGGGCTAAATATCGTCTCCAAATTACAGGTAAATTTATCACATGGTTTCTACGCAGAACTAAAACAATTTTACTTTCTTTACTTTTGGGGAAAATGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0009888 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0031099 GO:0032502 GO:0040007 GO:0042060 GO:0042246 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048589 GO:0048856 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF393

Protein Analysis

222

Amino Acids

24.98

Weight (kDa)

9.33

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DCC1-like	PF04134	85 - 200	2.1e-21	DCC1-like thiol-disulfide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0010102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50100
fragaria_vesca	FvH4_5g16490
malus_domestica	MD06G1180000.v1.1 MD06G1180300.v1.1 MD14G1185400.v1.1
prunus_persica	Prupe.5G178100_v2.0.a1
pyrus_communis	pycom06g15960 pycom14g15430 pycom14g15890
rosa_chinensis	RchiOBHm_Chr7g0179601
rosa_laevigata	RLG00000005340
rosa_multiflora	Rmu_co8321565.1_g000001 Rmu_sc0005329.1_g000024
rosa_roxburghii	Rroxscaffold_155G00443890 Rroxscaffold_3G00273620
rosa_rugosa	Rorug06G0426500
rosa_samantha	Rh7AG025900 Rh7BG025200 Rh7CG026900 Rh7DG026500
rosa_wichuraiana	Rw7G002080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	539
Acc36I	ACCTGC	1 cut(s)	539
AciI	CCGC	1 cut(s)	179
AcsI	RAATTY	1 cut(s)	599
AfaI	GTAC	1 cut(s)	325
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	1 cut(s)	409
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	3 cut(s)	82, 167, 348
AluI	AGCT	3 cut(s)	82, 167, 348
Alw26I	GTCTC	1 cut(s)	587
AlwNI	CAGNNNCTG	2 cut(s)	230, 554
ApoI	RAATTY	1 cut(s)	599
AsuHPI	GGTGA	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	501
BccI	CCATC	4 cut(s)	254, 437, 440, 498
BciT130I	CCWGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	587
BfaI	CTAG	2 cut(s)	150, 383
BfmI	CTRYAG	1 cut(s)	77
BfuAI	ACCTGC	1 cut(s)	539
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
Bme1390I	CCNGG	1 cut(s)	144
BmiI	GGNNCC	3 cut(s)	66, 448, 541
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	1 cut(s)	240
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
BpmI	CTGGAG	2 cut(s)	68, 348
BsaBI	GATNNNNATC	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse8I	GATNNNNATC	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	143
BseGI	GGATG	2 cut(s)	432, 509
BseJI	GATNNNNATC	1 cut(s)	49
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMII	CTCAG	4 cut(s)	125, 222, 290, 363
BseRI	GAGGAG	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	587
BsmBI	CGTCTC	1 cut(s)	587
BsmI	GAATGC	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	501
BspACI	CCGC	1 cut(s)	179
BspCNI	CTCAG	4 cut(s)	124, 223, 291, 362
BspLI	GGNNCC	3 cut(s)	66, 448, 541
BspMI	ACCTGC	1 cut(s)	539
BssECI	CCNNGG	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	2 cut(s)	397, 451
BstDEI	CTNAG	5 cut(s)	8, 111, 231, 299, 349
BstF5I	GGATG	2 cut(s)	432, 509
BstMAI	GTCTC	1 cut(s)	587
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 94, 496
BstNI	CCWGG	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	142
BstSFI	CTRYAG	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	432, 509
BveI	ACCTGC	1 cut(s)	539
CaiI	CAGNNNCTG	2 cut(s)	230, 554
Csp6I	GTAC	1 cut(s)	324
CviAII	CATG	2 cut(s)	428, 609
CviJI	RGCY	9 cut(s)	5, 82, 88, 167, 182, 348, 382, 499, 572
CviKI_1	RGCY	9 cut(s)	5, 82, 88, 167, 182, 348, 382, 499, 572
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	5 cut(s)	8, 111, 231, 299, 349
Eco24I	GRGCYC	1 cut(s)	501
Eco32I	GATATC	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	142
EcoRV	GATATC	1 cut(s)	74
EcoT38I	GRGCYC	1 cut(s)	501
Esp3I	CGTCTC	1 cut(s)	587
FaeI	CATG	2 cut(s)	431, 612
FatI	CATG	2 cut(s)	427, 608
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	2 cut(s)	419, 516
FriOI	GRGCYC	1 cut(s)	501
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	2 cut(s)	150, 383
GluI	GCNGC	1 cut(s)	180
GsuI	CTGGAG	2 cut(s)	68, 348
Hin1II	CATG	2 cut(s)	431, 612
HincII	GTYRAC	2 cut(s)	120, 340
HindII	GTYRAC	2 cut(s)	120, 340
HinfI	GANTC	2 cut(s)	187, 221
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	3 cut(s)	120, 272, 340
Hpy188I	TCNGA	6 cut(s)	9, 114, 352, 442, 476, 503
Hpy188III	TCNNGA	2 cut(s)	150, 365
Hpy8I	GTNNAC	3 cut(s)	120, 272, 340
HpyAV	CCTTC	1 cut(s)	30
HpyCH4III	ACNGT	2 cut(s)	397, 451
HpyCH4V	TGCA	1 cut(s)	515
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 94, 496
HpyF3I	CTNAG	5 cut(s)	8, 111, 231, 299, 349
Hsp92II	CATG	2 cut(s)	431, 612
LmnI	GCTCC	2 cut(s)	87, 112
LpnPI	CCDG	7 cut(s)	98, 129, 156, 243, 378, 534, 579
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	2 cut(s)	150, 383
MaeIII	GTNAC	2 cut(s)	193, 454
MboII	GAAGA	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	501
MluCI	AATT	5 cut(s)	132, 235, 588, 599, 633
MseI	TTAA	1 cut(s)	246
MspR9I	CCNGG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	470
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	3 cut(s)	11, 94, 496
NlaIII	CATG	2 cut(s)	431, 612
NlaIV	GGNNCC	3 cut(s)	66, 448, 541
PaqCI	CACCTGC	1 cut(s)	539
PctI	GAATGC	1 cut(s)	470
PfeI	GAWTC	2 cut(s)	187, 221
PkrI	GCNGC	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	3 cut(s)	66, 448, 541
PsrI	GAACNNNNNNTAC	2 cut(s)	439, 471
PstNI	CAGNNNCTG	2 cut(s)	230, 554
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	1 cut(s)	180
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	1 cut(s)	501
SfaNI	GCATC	1 cut(s)	240
SfcI	CTRYAG	1 cut(s)	77
Sse9I	AATT	5 cut(s)	132, 235, 588, 599, 633
SsiI	CCGC	1 cut(s)	179
SspMI	CTAG	2 cut(s)	150, 383
StyD4I	CCNGG	1 cut(s)	142
TaaI	ACNGT	2 cut(s)	397, 451
TaqI	TCGA	2 cut(s)	70, 465
TasI	AATT	5 cut(s)	132, 235, 588, 599, 633
TauI	GCSGC	1 cut(s)	182
TfiI	GAWTC	2 cut(s)	187, 221
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TspDTI	ATGAA	5 cut(s)	39, 125, 228, 416, 543
XapI	RAATTY	1 cut(s)	599
XbaI	TCTAGA	1 cut(s)	149
XspI	CTAG	2 cut(s)	150, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.