Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005329.1

Orthogroup ID

OG0010102

Physical Location & Seq

Genomic Coordinates Forward (+)

128310 .. 129981

Gene Structure 1672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005329.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atggctctgagagcagggtgtagtagtattggaagaaggcaaagatgttcatctctgttatcggttcctcgatatctacagctccagcctcatcttcctcactctgctcctcagaggttgacatcatttccaattcatcaacctgggtctagatttggaatgagagctataagtgaagcggctgtgaatcccgtaactcccaagaaaggagatgaacgagaatcagcacctgagaattggaagattaagatgctgtatgatggggattgtccactatgtatgagagaggtgaatatgctgagagagagaaacaagagttatggtactatcaagtttgttgacataagctcagaggattactctccgggggataatatggggctagactacaaaactgttatgggaaacattcatgccatcctctctgatggaaccgtagttactgatgtcgaagaatttgccgggtctggtctgggcaaagcgacgacggcgacggggtcgaagcggcttggagcgtctgggctgaagacgaaggcggtcggaattgaagagatcgccggtcttggcaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0009888 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0031099 GO:0032502 GO:0040007 GO:0042060 GO:0042246 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048589 GO:0048856 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF393

Protein Analysis

190

Amino Acids

20.58

Weight (kDa)

9.1

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50100
fragaria_vesca	FvH4_5g16490
malus_domestica	MD06G1180000.v1.1 MD06G1180300.v1.1 MD14G1185400.v1.1
prunus_persica	Prupe.5G178100_v2.0.a1
pyrus_communis	pycom06g15960 pycom14g15430 pycom14g15890
rosa_chinensis	RchiOBHm_Chr7g0179601
rosa_laevigata	RLG00000005340
rosa_multiflora	Rmu_co8321565.1_g000001 Rmu_sc0005329.1_g000024
rosa_roxburghii	Rroxscaffold_155G00443890 Rroxscaffold_3G00273620
rosa_rugosa	Rorug06G0426500
rosa_samantha	Rh7AG025900 Rh7BG025200 Rh7CG026900 Rh7DG026500
rosa_wichuraiana	Rw7G002080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	558
Acc36I	ACCTGC	1 cut(s)	558
AciI	CCGC	3 cut(s)	179, 505, 536
AcsI	RAATTY	1 cut(s)	455
AcuI	CTGAAG	1 cut(s)	545
AfaI	GTAC	1 cut(s)	325
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	1 cut(s)	548
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	3 cut(s)	82, 167, 348
AluI	AGCT	3 cut(s)	82, 167, 348
AlwNI	CAGNNNCTG	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	455
AsuC2I	CCSGG	2 cut(s)	366, 463
AsuHPI	GGTGA	1 cut(s)	301
BbsI	GAAGAC	1 cut(s)	533
BccI	CCATC	3 cut(s)	254, 422, 425
BceAI	ACGGC	1 cut(s)	504
BcgI	CGANNNNNNTGC	2 cut(s)	440, 474
BciT130I	CCWGG	1 cut(s)	144
BcnI	CCSGG	2 cut(s)	366, 463
BfaI	CTAG	2 cut(s)	150, 383
BfmI	CTRYAG	1 cut(s)	77
BfuAI	ACCTGC	1 cut(s)	558
BisI	GCNGC	2 cut(s)	180, 506
BlsI	GCNGC	2 cut(s)	181, 507
Bme1390I	CCNGG	3 cut(s)	144, 366, 463
BmiI	GGNNCC	2 cut(s)	66, 433
BmrFI	CCNGG	3 cut(s)	144, 366, 463
BmsI	GCATC	1 cut(s)	240
BpiI	GAAGAC	1 cut(s)	533
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
BpmI	CTGGAG	1 cut(s)	68
BpuMI	CCSGG	2 cut(s)	366, 463
BsaBI	GATNNNNATC	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	143, 365
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse118I	RCCGGY	1 cut(s)	557
Bse8I	GATNNNNATC	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	2 cut(s)	143, 365
BseGI	GGATG	1 cut(s)	417
BseJI	GATNNNNATC	1 cut(s)	49
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMII	CTCAG	4 cut(s)	125, 222, 290, 363
BseRI	GAGGAG	1 cut(s)	99
Bsh1285I	CGRYCG	1 cut(s)	540
BsiEI	CGRYCG	1 cut(s)	540
BsiSI	CCGG	3 cut(s)	365, 462, 558
BslI	CCNNNNNNNGG	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	552
BspACI	CCGC	3 cut(s)	179, 505, 536
BspCNI	CTCAG	4 cut(s)	124, 223, 291, 362
BspLI	GGNNCC	2 cut(s)	66, 433
BspMI	ACCTGC	1 cut(s)	558
BsrFI	RCCGGY	1 cut(s)	557
BssAI	RCCGGY	1 cut(s)	557
BssECI	CCNNGG	2 cut(s)	143, 365
BssMI	GATC	1 cut(s)	552
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	2 cut(s)	397, 436
Bst6I	CTCTTC	1 cut(s)	543
BstDEI	CTNAG	5 cut(s)	8, 111, 231, 299, 349
BstF5I	GGATG	1 cut(s)	417
BstKTI	GATC	1 cut(s)	555
BstMBI	GATC	1 cut(s)	552
BstMCI	CGRYCG	1 cut(s)	540
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 488
BstNI	CCWGG	1 cut(s)	144
BstSCI	CCNGG	3 cut(s)	142, 364, 461
BstSFI	CTRYAG	1 cut(s)	77
BstV2I	GAAGAC	1 cut(s)	533
BtsCI	GGATG	1 cut(s)	417
BveI	ACCTGC	1 cut(s)	558
CaiI	CAGNNNCTG	1 cut(s)	230
Cfr10I	RCCGGY	1 cut(s)	557
CseI	GACGC	1 cut(s)	504
Csp6I	GTAC	1 cut(s)	324
CviAII	CATG	1 cut(s)	413
CviJI	RGCY	9 cut(s)	5, 82, 88, 167, 182, 348, 382, 508, 523
CviKI_1	RGCY	9 cut(s)	5, 82, 88, 167, 182, 348, 382, 508, 523
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	5 cut(s)	8, 111, 231, 299, 349
DpnI	GATC	1 cut(s)	554
DpnII	GATC	1 cut(s)	552
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
Eco32I	GATATC	1 cut(s)	74
Eco57I	CTGAAG	1 cut(s)	545
EcoRII	CCWGG	1 cut(s)	142
EcoRV	GATATC	1 cut(s)	74
FaeI	CATG	1 cut(s)	416
FatI	CATG	1 cut(s)	412
Fnu4HI	GCNGC	2 cut(s)	180, 506
FokI	GGATG	1 cut(s)	404
Fsp4HI	GCNGC	2 cut(s)	180, 506
FspBI	CTAG	2 cut(s)	150, 383
GluI	GCNGC	2 cut(s)	180, 506
GsuI	CTGGAG	1 cut(s)	68
HapII	CCGG	3 cut(s)	365, 462, 558
HgaI	GACGC	1 cut(s)	504
Hin1II	CATG	1 cut(s)	416
HincII	GTYRAC	2 cut(s)	120, 340
HindII	GTYRAC	2 cut(s)	120, 340
HinfI	GANTC	2 cut(s)	187, 221
HpaII	CCGG	3 cut(s)	365, 462, 558
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	3 cut(s)	120, 272, 340
Hpy188I	TCNGA	5 cut(s)	9, 114, 352, 427, 542
Hpy188III	TCNNGA	1 cut(s)	150
Hpy8I	GTNNAC	3 cut(s)	120, 272, 340
Hpy99I	CGWCG	3 cut(s)	487, 490, 496
HpyAV	CCTTC	2 cut(s)	30, 526
HpyCH4III	ACNGT	2 cut(s)	397, 436
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 488
HpyF3I	CTNAG	5 cut(s)	8, 111, 231, 299, 349
Hsp92II	CATG	1 cut(s)	416
Kzo9I	GATC	1 cut(s)	552
LmnI	GCTCC	3 cut(s)	87, 112, 512
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	2 cut(s)	150, 383
MaeIII	GTNAC	2 cut(s)	193, 439
MalI	GATC	1 cut(s)	554
MboI	GATC	1 cut(s)	552
MboII	GAAGA	6 cut(s)	45, 86, 253, 464, 538, 560
MluCI	AATT	4 cut(s)	132, 235, 455, 543
MmeI	TCCRAC	1 cut(s)	520
MnlI	CCTC	8 cut(s)	78, 99, 108, 108, 120, 280, 346, 431
MseI	TTAA	1 cut(s)	246
MspI	CCGG	3 cut(s)	365, 462, 558
MspR9I	CCNGG	3 cut(s)	144, 366, 463
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	11, 488
NciI	CCSGG	2 cut(s)	366, 463
NdeII	GATC	1 cut(s)	552
NlaIII	CATG	1 cut(s)	416
NlaIV	GGNNCC	2 cut(s)	66, 433
PaqCI	CACCTGC	1 cut(s)	558
PfeI	GAWTC	2 cut(s)	187, 221
PflFI	GACNNNGTC	1 cut(s)	496
PkrI	GCNGC	2 cut(s)	181, 507
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	66, 433
PsrI	GAACNNNNNNTAC	2 cut(s)	424, 456
PstNI	CAGNNNCTG	1 cut(s)	230
PsyI	GACNNNGTC	1 cut(s)	496
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	2 cut(s)	180, 506
Sau3AI	GATC	1 cut(s)	552
ScrFI	CCNGG	3 cut(s)	144, 366, 463
SetI	ASST	8 cut(s)	84, 119, 145, 169, 232, 291, 350, 572
SfaNI	GCATC	1 cut(s)	240
SfcI	CTRYAG	1 cut(s)	77
Sse9I	AATT	4 cut(s)	132, 235, 455, 543
SsiI	CCGC	3 cut(s)	179, 505, 536
SspMI	CTAG	2 cut(s)	150, 383
StyD4I	CCNGG	3 cut(s)	142, 364, 461
TaaI	ACNGT	2 cut(s)	397, 436
TaqI	TCGA	3 cut(s)	70, 450, 500
TasI	AATT	4 cut(s)	132, 235, 455, 543
TauI	GCSGC	2 cut(s)	182, 508
TfiI	GAWTC	2 cut(s)	187, 221
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TspDTI	ATGAA	4 cut(s)	39, 125, 228, 401
Tth111I	GACNNNGTC	1 cut(s)	496
XapI	RAATTY	1 cut(s)	455
XbaI	TCTAGA	1 cut(s)	149
XspI	CTAG	2 cut(s)	150, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.