Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0010102

Physical Location & Seq

Genomic Coordinates Forward (+)

27763511 .. 27767877

Gene Structure 4367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1185400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGTAGTTACGAACCAGTGCAATCCAACCAAACTAACTTTGAACCTTTTGGTTCCAAAATCTCAATCCCAAGAGCTCTGGATTTGGTTACAGAAGGAGGAAGAAGAAGCAATGGCAATGAAGGCAGCTGCTTCCGCATGCAAAATTGGAGGGAGACAAAGAAACCCTTCTCTCTCATCAATTCCTCTCTCTCTCCAACAACTCAAAGTTCATCAGATTCATCGTCCCCAAAGTTTCATCTCAGCTCCTATTCACCAACCTGGGTTTAAGTCTTCAGCCAGGGCTATTAGCGGGGCAGCTGCAGACCCCATGACTCCAAAGAAAGAAAATGATCAAGAACAAACACCTCAGAATTGGAAGATTAAAATGCTCTTTGATGGGGATTGCCCTTTATGCATGCGAGAGGTGGACATGCTGCGAGAGAGAAATAAGCGTTATGGTACTATCAAGTTTGTTGACATAAGTTCAGATGATTACTCCCCGGAGGAGAATCAGGGGCTGGACTACAAGACTGTTATGGGAAACATTCATGCCATCCTCTCTGATGGAACTGTAGTCACTGATGTCGAAGCATTCAGAAAGTTATACGAACAGGTGGGGCTCGGATGGGTATATGCCATAACTAAATACGAACCTATCGCAACAATAGCAGGTGCTGTATATGGTGTTTGGGCTAAATATCGTCTTCAAATCACAGGCCGGCCACCTCTAGAAGAGGTTTTGGAGTTGCGAAAGAAGAACAAGGGAGAAGTATGTAAAGATTCAAAAGATTGTAAACTTCCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0009888 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0031099 GO:0032502 GO:0040007 GO:0042060 GO:0042246 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048589 GO:0048856 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF393

Protein Analysis

263

Amino Acids

29.51

Weight (kDa)

8.42

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DCC1-like	PF04134	124 - 234	5.8e-25	DCC1-like thiol-disulfide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50100
fragaria_vesca	FvH4_5g16490
malus_domestica	MD06G1180000.v1.1 MD06G1180300.v1.1 MD14G1185400.v1.1
prunus_persica	Prupe.5G178100_v2.0.a1
pyrus_communis	pycom06g15960 pycom14g15430 pycom14g15890
rosa_chinensis	RchiOBHm_Chr7g0179601
rosa_laevigata	RLG00000005340
rosa_multiflora	Rmu_co8321565.1_g000001 Rmu_sc0005329.1_g000024
rosa_roxburghii	Rroxscaffold_155G00443890 Rroxscaffold_3G00273620
rosa_rugosa	Rorug06G0426500
rosa_samantha	Rh7AG025900 Rh7BG025200 Rh7CG026900 Rh7DG026500
rosa_wichuraiana	Rw7G002080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	641
Acc36I	ACCTGC	1 cut(s)	641
AciI	CCGC	2 cut(s)	135, 291
AcoI	YGGCCR	1 cut(s)	701
AcuI	CTGAAG	1 cut(s)	258
AfaI	GTAC	1 cut(s)	442
AgsI	TTSAA	3 cut(s)	43, 689, 765
AjnI	CCWGG	2 cut(s)	259, 278
AluBI	AGCT	4 cut(s)	76, 128, 245, 299
AluI	AGCT	4 cut(s)	76, 128, 245, 299
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	148
AlwNI	CAGNNNCTG	2 cut(s)	499, 656
AoxI	GGCC	2 cut(s)	697, 701
ApeKI	GCWGC	5 cut(s)	125, 128, 296, 299, 415
Asp700I	GAANNNNTTC	1 cut(s)	166
AsuC2I	CCSGG	1 cut(s)	482
AsuHPI	GGTGA	1 cut(s)	245
BanII	GRGCYC	2 cut(s)	78, 603
BbsI	GAAGAC	2 cut(s)	264, 677
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	5 cut(s)	115, 137, 286, 308, 402
BccI	CCATC	4 cut(s)	371, 539, 542, 600
BciT130I	CCWGG	2 cut(s)	261, 280
BclI	TGATCA	1 cut(s)	331
BcnI	CCSGG	1 cut(s)	482
BcoDI	GTCTC	1 cut(s)	148
BfaI	CTAG	1 cut(s)	710
BfmI	CTRYAG	2 cut(s)	300, 552
BfuAI	ACCTGC	1 cut(s)	641
BisI	GCNGC	5 cut(s)	126, 129, 297, 300, 416
BlsI	GCNGC	5 cut(s)	127, 130, 298, 301, 417
Bme1390I	CCNGG	3 cut(s)	261, 280, 482
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	3 cut(s)	261, 280, 482
BpiI	GAAGAC	2 cut(s)	264, 677
BpuMI	CCSGG	1 cut(s)	482
BsaJI	CCNNGG	3 cut(s)	260, 279, 480
Bse118I	RCCGGY	1 cut(s)	699
Bse1I	ACTGG	1 cut(s)	16
Bse3DI	GCAATG	2 cut(s)	117, 123
BseBI	CCWGG	2 cut(s)	261, 280
BseDI	CCNNGG	3 cut(s)	260, 279, 480
BseGI	GGATG	2 cut(s)	534, 611
BseMI	GCAATG	2 cut(s)	117, 123
BseMII	CTCAG	2 cut(s)	255, 362
BseNI	ACTGG	1 cut(s)	16
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	5 cut(s)	115, 137, 286, 308, 402
BshFI	GGCC	2 cut(s)	699, 703
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	2 cut(s)	482, 700
BslFI	GGGAC	1 cut(s)	210
BsmAI	GTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	210
BsmI	GAATGC	1 cut(s)	572
BsnI	GGCC	2 cut(s)	699, 703
Bsp1286I	GDGCHC	2 cut(s)	78, 603
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	2 cut(s)	135, 291
BspANI	GGCC	2 cut(s)	699, 703
BspCNI	CTCAG	2 cut(s)	254, 361
BspLI	GGNNCC	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	304
BspMI	ACCTGC	1 cut(s)	641
BsrDI	GCAATG	2 cut(s)	117, 123
BsrFI	RCCGGY	1 cut(s)	699
BsrI	ACTGG	1 cut(s)	16
BssAI	RCCGGY	1 cut(s)	699
BssECI	CCNNGG	3 cut(s)	260, 279, 480
BssMI	GATC	1 cut(s)	331
Bst2UI	CCWGG	2 cut(s)	261, 280
Bst4CI	ACNGT	2 cut(s)	514, 553
Bst6I	CTCTTC	1 cut(s)	708
BstC8I	GCNNGC	3 cut(s)	139, 398, 701
BstDEI	CTNAG	2 cut(s)	241, 348
BstF5I	GGATG	2 cut(s)	534, 611
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 134, 393, 647
BstNI	CCWGG	2 cut(s)	261, 280
BstNSI	RCATGY	3 cut(s)	141, 400, 415
BstSCI	CCNGG	3 cut(s)	259, 278, 480
BstSFI	CTRYAG	2 cut(s)	300, 552
BstV1I	GCAGC	5 cut(s)	115, 137, 286, 308, 402
BstV2I	GAAGAC	2 cut(s)	264, 677
BsuRI	GGCC	2 cut(s)	699, 703
BtsCI	GGATG	2 cut(s)	534, 611
BtsIMutI	CAGTG	2 cut(s)	23, 558
BveI	ACCTGC	1 cut(s)	641
Cac8I	GCNNGC	3 cut(s)	139, 398, 701
CaiI	CAGNNNCTG	2 cut(s)	499, 656
Cfr10I	RCCGGY	1 cut(s)	699
Csp6I	GTAC	1 cut(s)	441
CviAII	CATG	5 cut(s)	138, 310, 397, 412, 530
CviQI	GTAC	1 cut(s)	441
DdeI	CTNAG	2 cut(s)	241, 348
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
EaeI	YGGCCR	1 cut(s)	701
Eam1104I	CTCTTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	708
Ecl136II	GAGCTC	1 cut(s)	76
Eco24I	GRGCYC	2 cut(s)	78, 603
Eco53kI	GAGCTC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	259, 278
EcoT22I	ATGCAT	1 cut(s)	398
EcoT38I	GRGCYC	2 cut(s)	78, 603
FaeI	CATG	5 cut(s)	141, 313, 400, 415, 533
FalI	AAGNNNNNCTT	2 cut(s)	151, 183
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	5 cut(s)	137, 309, 396, 411, 529
FauI	CCCGC	1 cut(s)	284
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	5 cut(s)	126, 129, 297, 300, 416
FokI	GGATG	2 cut(s)	521, 618
FriOI	GRGCYC	2 cut(s)	78, 603
FseI	GGCCGGCC	1 cut(s)	703
Fsp4HI	GCNGC	5 cut(s)	126, 129, 297, 300, 416
FspBI	CTAG	1 cut(s)	710
GluI	GCNGC	5 cut(s)	126, 129, 297, 300, 416
HaeIII	GGCC	2 cut(s)	699, 703
HapII	CCGG	2 cut(s)	482, 700
Hin1II	CATG	5 cut(s)	141, 313, 400, 415, 533
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	4 cut(s)	217, 313, 490, 761
HpaII	CCGG	2 cut(s)	482, 700
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	3 cut(s)	409, 457, 776
Hpy188I	TCNGA	6 cut(s)	216, 351, 469, 544, 578, 605
Hpy188III	TCNNGA	4 cut(s)	79, 335, 710, 782
Hpy8I	GTNNAC	3 cut(s)	409, 457, 776
HpyAV	CCTTC	3 cut(s)	88, 115, 177
HpyCH4III	ACNGT	2 cut(s)	514, 553
HpyCH4V	TGCA	4 cut(s)	21, 141, 302, 396
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 134, 393, 647
HpyF3I	CTNAG	2 cut(s)	241, 348
Hsp92II	CATG	5 cut(s)	141, 313, 400, 415, 533
KroI	GCCGGC	1 cut(s)	699
KroNI	GCCGGC	1 cut(s)	701
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	1 cut(s)	331
LmnI	GCTCC	1 cut(s)	250
Lsp1109I	GCAGC	5 cut(s)	115, 137, 286, 308, 402
MaeI	CTAG	1 cut(s)	710
MaeIII	GTNAC	3 cut(s)	7, 87, 556
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	7 cut(s)	113, 116, 264, 370, 677, 725, 748
MhlI	GDGCHC	2 cut(s)	78, 603
MluCI	AATT	3 cut(s)	144, 180, 352
MlyI	GAGTC	1 cut(s)	307
MmeI	TCCRAC	2 cut(s)	50, 220
MnlI	CCTC	9 cut(s)	91, 143, 195, 357, 397, 478, 548, 709, 717
Mph1103I	ATGCAT	1 cut(s)	398
MroNI	GCCGGC	1 cut(s)	699
MroXI	GAANNNNTTC	1 cut(s)	166
MseI	TTAA	2 cut(s)	267, 363
MspA1I	CMGCKG	2 cut(s)	128, 299
MspI	CCGG	2 cut(s)	482, 700
MspR9I	CCNGG	3 cut(s)	261, 280, 482
Mva1269I	GAATGC	1 cut(s)	572
MvaI	CCWGG	2 cut(s)	261, 280
MwoI	GCNNNNNNNGC	4 cut(s)	122, 134, 393, 647
NaeI	GCCGGC	1 cut(s)	701
NciI	CCSGG	1 cut(s)	482
NdeII	GATC	1 cut(s)	331
NgoMIV	GCCGGC	1 cut(s)	699
NlaIII	CATG	5 cut(s)	141, 313, 400, 415, 533
NlaIV	GGNNCC	1 cut(s)	54
NmuCI	GTSAC	1 cut(s)	556
NsiI	ATGCAT	1 cut(s)	398
NspI	RCATGY	3 cut(s)	141, 400, 415
PaeI	GCATGC	2 cut(s)	141, 400
PaqCI	CACCTGC	1 cut(s)	641
PctI	GAATGC	1 cut(s)	572
PdiI	GCCGGC	1 cut(s)	701
PdmI	GAANNNNTTC	1 cut(s)	166
PfeI	GAWTC	3 cut(s)	217, 490, 761
PkrI	GCNGC	5 cut(s)	127, 130, 298, 301, 417
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
Psp124BI	GAGCTC	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	259, 278
PspGI	CCWGG	2 cut(s)	259, 278
PspN4I	GGNNCC	1 cut(s)	54
PstI	CTGCAG	1 cut(s)	304
PstNI	CAGNNNCTG	2 cut(s)	499, 656
PvuII	CAGCTG	2 cut(s)	128, 299
RigI	GGCCGGCC	1 cut(s)	703
RsaI	GTAC	1 cut(s)	442
RsaNI	GTAC	1 cut(s)	441
SacI	GAGCTC	1 cut(s)	78
SaqAI	TTAA	2 cut(s)	267, 363
SatI	GCNGC	5 cut(s)	126, 129, 297, 300, 416
Sau3AI	GATC	1 cut(s)	331
SchI	GAGTC	1 cut(s)	307
ScrFI	CCNGG	3 cut(s)	261, 280, 482
SduI	GDGCHC	2 cut(s)	78, 603
SfcI	CTRYAG	2 cut(s)	300, 552
SphI	GCATGC	2 cut(s)	141, 400
Sse9I	AATT	3 cut(s)	144, 180, 352
SsiI	CCGC	2 cut(s)	135, 291
SspMI	CTAG	1 cut(s)	710
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	3 cut(s)	259, 278, 480
TaaI	ACNGT	2 cut(s)	514, 553
TaqI	TCGA	1 cut(s)	567
TasI	AATT	3 cut(s)	144, 180, 352
TfiI	GAWTC	3 cut(s)	217, 490, 761
Tru1I	TTAA	2 cut(s)	267, 363
Tru9I	TTAA	2 cut(s)	267, 363
TscAI	CASTG	2 cut(s)	23, 565
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	5 cut(s)	125, 128, 296, 299, 415
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	5 cut(s)	134, 200, 209, 226, 518
TspRI	CASTG	2 cut(s)	23, 565
XbaI	TCTAGA	1 cut(s)	709
XceI	RCATGY	3 cut(s)	141, 400, 415
XmnI	GAANNNNTTC	1 cut(s)	166
XspI	CTAG	1 cut(s)	710
Zsp2I	ATGCAT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.