Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8321565.1

Orthogroup ID

OG0010102

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 748

Gene Structure 748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8321565.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atgagagctataagtgaagcggctgtgaatcccgtaactcccaagaaaggagatgaacgagaatcagcacctgagaattggaagattaagatgctgtatgatggggattgtccactatgtatgagagaggtgaatatgctgagagagagaaacaagagttatggtactatcaagtttgttgacataagctcagaggattactctccgggggataatatggggctagactacaaaactgttatgggaaacattcatgccatcctctctgatggaaccgtagttactgatgtcgaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0009888 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0031099 GO:0032502 GO:0040007 GO:0042060 GO:0042246 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048589 GO:0048856 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF393

Protein Analysis

98

Amino Acids

10.96

Weight (kDa)

4.83

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50100
fragaria_vesca	FvH4_5g16490
malus_domestica	MD06G1180000.v1.1 MD06G1180300.v1.1 MD14G1185400.v1.1
prunus_persica	Prupe.5G178100_v2.0.a1
pyrus_communis	pycom06g15960 pycom14g15430 pycom14g15890
rosa_chinensis	RchiOBHm_Chr7g0179601
rosa_laevigata	RLG00000005340
rosa_multiflora	Rmu_co8321565.1_g000001 Rmu_sc0005329.1_g000024
rosa_roxburghii	Rroxscaffold_155G00443890 Rroxscaffold_3G00273620
rosa_rugosa	Rorug06G0426500
rosa_samantha	Rh7AG025900 Rh7BG025200 Rh7CG026900 Rh7DG026500
rosa_wichuraiana	Rw7G002080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	47
AluBI	AGCT	2 cut(s)	8, 189
AluI	AGCT	2 cut(s)	8, 189
AlwNI	CAGNNNCTG	1 cut(s)	71
AsuC2I	CCSGG	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	142
BccI	CCATC	3 cut(s)	95, 263, 266
BcnI	CCSGG	1 cut(s)	207
BfaI	CTAG	1 cut(s)	224
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	1 cut(s)	207
BmiI	GGNNCC	1 cut(s)	274
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	1 cut(s)	81
BplI	GAGNNNNNCTC	2 cut(s)	185, 217
BpuMI	CCSGG	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseMII	CTCAG	3 cut(s)	63, 131, 204
BsiSI	CCGG	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	47
BspACI	CCGC	1 cut(s)	20
BspCNI	CTCAG	3 cut(s)	64, 132, 203
BspLI	GGNNCC	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	206
Bst4CI	ACNGT	2 cut(s)	238, 277
BstDEI	CTNAG	3 cut(s)	72, 140, 190
BstF5I	GGATG	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	258
CaiI	CAGNNNCTG	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	1 cut(s)	254
CviJI	RGCY	4 cut(s)	8, 23, 189, 223
CviKI_1	RGCY	4 cut(s)	8, 23, 189, 223
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	3 cut(s)	72, 140, 190
FaeI	CATG	1 cut(s)	257
FatI	CATG	1 cut(s)	253
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	1 cut(s)	21
HapII	CCGG	1 cut(s)	206
Hin1II	CATG	1 cut(s)	257
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	2 cut(s)	28, 62
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	2 cut(s)	113, 181
Hpy188I	TCNGA	2 cut(s)	193, 268
Hpy8I	GTNNAC	2 cut(s)	113, 181
HpyCH4III	ACNGT	2 cut(s)	238, 277
HpyF3I	CTNAG	3 cut(s)	72, 140, 190
Hsp92II	CATG	1 cut(s)	257
LpnPI	CCDG	2 cut(s)	84, 219
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	2 cut(s)	34, 280
MboII	GAAGA	1 cut(s)	94
MluCI	AATT	1 cut(s)	76
MnlI	CCTC	3 cut(s)	121, 187, 272
MseI	TTAA	1 cut(s)	87
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	207
NciI	CCSGG	1 cut(s)	207
NlaIII	CATG	1 cut(s)	257
NlaIV	GGNNCC	1 cut(s)	274
PfeI	GAWTC	2 cut(s)	28, 62
PkrI	GCNGC	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	274
PsrI	GAACNNNNNNTAC	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	71
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	1 cut(s)	21
ScrFI	CCNGG	1 cut(s)	207
SetI	ASST	4 cut(s)	10, 73, 132, 191
SfaNI	GCATC	1 cut(s)	81
Sse9I	AATT	1 cut(s)	76
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	2 cut(s)	238, 277
TaqI	TCGA	1 cut(s)	291
TasI	AATT	1 cut(s)	76
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	2 cut(s)	28, 62
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TspDTI	ATGAA	2 cut(s)	69, 242
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.