Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0010102

Physical Location & Seq

Genomic Coordinates Forward (+)

1758491 .. 1760397

Gene Structure 1907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G002080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCTCTGAGAGCAGGGTGTAGTAGTATTGGAAGAAGGCAAAGATGTTCATCTCTGTTGACATCATTTCCAATTCATCAACCTGGGTCTAGATTTGGAATGAGGGCTATAAGTGAAGCGGCTGTGAATCCCGTAACTCCCAAGAAAGGAGATGAACGAGAATCAGCACCTGAGAATTGGAAGATTAAGATGCTGTATGATGGGGATTGTCCACTATGTATGAGAGAGGTGAATATGCTGAGAGAGAGAAACAAGAGTTATGGTACTATCAAGTTTGTTGACATAAGCTCAGAGGATTACTCTCCAGGGGATAATATGGGGCTAGACTACAAAACTGTTATGGGAAACATTCATGCCATCCTCTCTGATGGAACCGTAGTTACTGATGTCGAAGCATTCAGAAAGTTATATGAGCAAGTTGGGCTCGGATGGGTCTATGCAATAACCAAATATGAACCGATTGGAACCATAGCCGGTGCTGTTTATGGTGTTTGGGCTAAATATCGTCTCCAAATTACAGGCCGACCACCTTTAGAAGAGGTTTTGGAATTGCGGAAGAAGAACAAGGGAGAAGTATGTAATGACAGAACTGATTGTAAACTACCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0009888 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0031099 GO:0032502 GO:0040007 GO:0042060 GO:0042246 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048589 GO:0048856 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF393

Protein Analysis

203

Amino Acids

22.74

Weight (kDa)

8.47

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DCC1-like	PF04134	65 - 175	2.9e-24	DCC1-like thiol-disulfide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50100
fragaria_vesca	FvH4_5g16490
malus_domestica	MD06G1180000.v1.1 MD06G1180300.v1.1 MD14G1185400.v1.1
prunus_persica	Prupe.5G178100_v2.0.a1
pyrus_communis	pycom06g15960 pycom14g15430 pycom14g15890
rosa_chinensis	RchiOBHm_Chr7g0179601
rosa_laevigata	RLG00000005340
rosa_multiflora	Rmu_co8321565.1_g000001 Rmu_sc0005329.1_g000024
rosa_roxburghii	Rroxscaffold_155G00443890 Rroxscaffold_3G00273620
rosa_rugosa	Rorug06G0426500
rosa_samantha	Rh7AG025900 Rh7BG025200 Rh7CG026900 Rh7DG026500
rosa_wichuraiana	Rw7G002080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	119, 553
AfaI	GTAC	1 cut(s)	265
AfiI	CCNNNNNNNGG	1 cut(s)	146
AjnI	CCWGG	2 cut(s)	82, 304
AluBI	AGCT	1 cut(s)	288
AluI	AGCT	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	512
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	520
AsuHPI	GGTGA	1 cut(s)	241
BanII	GRGCYC	1 cut(s)	426
BccI	CCATC	4 cut(s)	194, 362, 365, 423
BciT130I	CCWGG	2 cut(s)	84, 306
BcoDI	GTCTC	1 cut(s)	512
BfaI	CTAG	2 cut(s)	90, 323
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	2 cut(s)	84, 306
BmiI	GGNNCC	2 cut(s)	373, 466
BmrFI	CCNGG	2 cut(s)	84, 306
BmsI	GCATC	1 cut(s)	180
BplI	GAGNNNNNCTC	2 cut(s)	284, 316
BpmI	CTGGAG	1 cut(s)	288
BsaBI	GATNNNNATC	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	83, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse118I	RCCGGY	1 cut(s)	473
Bse8I	GATNNNNATC	1 cut(s)	49
BseBI	CCWGG	2 cut(s)	84, 306
BseDI	CCNNGG	2 cut(s)	83, 305
BseGI	GGATG	2 cut(s)	357, 434
BseJI	GATNNNNATC	1 cut(s)	49
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMII	CTCAG	3 cut(s)	162, 230, 303
BshFI	GGCC	1 cut(s)	522
BsiSI	CCGG	1 cut(s)	474
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	512
BsmBI	CGTCTC	1 cut(s)	512
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	522
Bsp1286I	GDGCHC	1 cut(s)	426
BspACI	CCGC	2 cut(s)	119, 553
BspANI	GGCC	1 cut(s)	522
BspCNI	CTCAG	3 cut(s)	163, 231, 302
BspLI	GGNNCC	2 cut(s)	373, 466
BsrFI	RCCGGY	1 cut(s)	473
BssAI	RCCGGY	1 cut(s)	473
BssECI	CCNNGG	2 cut(s)	83, 305
Bst2UI	CCWGG	2 cut(s)	84, 306
Bst4CI	ACNGT	2 cut(s)	337, 376
Bst6I	CTCTTC	1 cut(s)	531
BstDEI	CTNAG	4 cut(s)	8, 171, 239, 289
BstF5I	GGATG	2 cut(s)	357, 434
BstMAI	GTCTC	1 cut(s)	512
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 421
BstNI	CCWGG	2 cut(s)	84, 306
BstSCI	CCNGG	2 cut(s)	82, 304
BsuRI	GGCC	1 cut(s)	522
BtsCI	GGATG	2 cut(s)	357, 434
CaiI	CAGNNNCTG	1 cut(s)	170
Cfr10I	RCCGGY	1 cut(s)	473
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	1 cut(s)	353
CviJI	RGCY	9 cut(s)	5, 107, 122, 288, 322, 424, 473, 497, 522
CviKI_1	RGCY	9 cut(s)	5, 107, 122, 288, 322, 424, 473, 497, 522
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	4 cut(s)	8, 171, 239, 289
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Eco24I	GRGCYC	1 cut(s)	426
EcoRII	CCWGG	2 cut(s)	82, 304
EcoT38I	GRGCYC	1 cut(s)	426
Esp3I	CGTCTC	1 cut(s)	512
FaeI	CATG	1 cut(s)	356
FatI	CATG	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	2 cut(s)	344, 441
FriOI	GRGCYC	1 cut(s)	426
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	2 cut(s)	90, 323
GluI	GCNGC	1 cut(s)	120
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	522
HapII	CCGG	1 cut(s)	474
Hin1II	CATG	1 cut(s)	356
HincII	GTYRAC	2 cut(s)	60, 280
HindII	GTYRAC	2 cut(s)	60, 280
HinfI	GANTC	2 cut(s)	127, 161
HpaII	CCGG	1 cut(s)	474
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	4 cut(s)	60, 212, 280, 599
Hpy188I	TCNGA	5 cut(s)	9, 292, 367, 401, 428
Hpy188III	TCNNGA	1 cut(s)	90
Hpy8I	GTNNAC	4 cut(s)	60, 212, 280, 599
HpyAV	CCTTC	1 cut(s)	30
HpyCH4III	ACNGT	2 cut(s)	337, 376
HpyCH4V	TGCA	1 cut(s)	440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 421
HpyF3I	CTNAG	4 cut(s)	8, 171, 239, 289
Hsp92II	CATG	1 cut(s)	356
LpnPI	CCDG	7 cut(s)	69, 96, 183, 291, 318, 487, 504
LweI	GCATC	1 cut(s)	180
MaeI	CTAG	2 cut(s)	90, 323
MaeIII	GTNAC	2 cut(s)	133, 379
MboII	GAAGA	5 cut(s)	45, 193, 548, 568, 571
MhlI	GDGCHC	1 cut(s)	426
MluCI	AATT	4 cut(s)	72, 175, 513, 548
MnlI	CCTC	5 cut(s)	96, 220, 286, 371, 532
MseI	TTAA	1 cut(s)	186
MspI	CCGG	1 cut(s)	474
MspR9I	CCNGG	2 cut(s)	84, 306
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	2 cut(s)	84, 306
MwoI	GCNNNNNNNGC	2 cut(s)	11, 421
NlaIII	CATG	1 cut(s)	356
NlaIV	GGNNCC	2 cut(s)	373, 466
PctI	GAATGC	1 cut(s)	395
PfeI	GAWTC	2 cut(s)	127, 161
PkrI	GCNGC	1 cut(s)	121
Psp6I	CCWGG	2 cut(s)	82, 304
PspGI	CCWGG	2 cut(s)	82, 304
PspN4I	GGNNCC	2 cut(s)	373, 466
PsrI	GAACNNNNNNTAC	2 cut(s)	364, 396
PstNI	CAGNNNCTG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	1 cut(s)	120
ScrFI	CCNGG	2 cut(s)	84, 306
SduI	GDGCHC	1 cut(s)	426
SetI	ASST	6 cut(s)	85, 172, 231, 290, 532, 543
SfaNI	GCATC	1 cut(s)	180
Sse9I	AATT	4 cut(s)	72, 175, 513, 548
SsiI	CCGC	2 cut(s)	119, 553
SspMI	CTAG	2 cut(s)	90, 323
StyD4I	CCNGG	2 cut(s)	82, 304
TaaI	ACNGT	2 cut(s)	337, 376
TaqI	TCGA	1 cut(s)	390
TasI	AATT	4 cut(s)	72, 175, 513, 548
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	2 cut(s)	127, 161
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TspDTI	ATGAA	5 cut(s)	39, 65, 168, 341, 468
XbaI	TCTAGA	1 cut(s)	89
XspI	CTAG	2 cut(s)	90, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.