Rh7CG026900

protein At5g50100, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0010102
Physical Location & Seq
Forward (+)
1956987 .. 1958988
2002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG026900.1

Sequence Viewer

Length: 663 bp
ATGGCTTTGAGAGCCGGGTGTAGTAGTATTGGAGGAAGGCAAAGATGTTCATCTCTGTTATCGGTTCCTCGATATCTGCAACTCCAGCCTCAACTTCCTCACTCTGCTCCTCAGAGTTTGACGTCATTTCCAATTCATCAACCTGGGTCTAGATTTGGAATGAGAGCTATAAGTGAAGCGGCTGTGAATCCCGTAACTCCCAAGAAAGGAGATGAGCGAGAATCAGCACCTGAGAATTGGAAGATTAAGATGCTGTATGATGGGGATTGTCCACTATGTATGAGAGAGGTGAATATGCTGAGAGAGAGAAACAAGAGTTATGGTACTATCAAGTTTGTTGACATAAGCTCAGAGGATTATTCTCCAGAGGATAATATGGGGCTAGACTACAAAACTGTTATGGGAAACATTCATGCCATCCTCTCTGATGGAACCGTAGTTACTGATGTCGAAGCATTCAGAAAGTTATATGAGCAAGTTGGGCTCGGATGGGTCTATGCAATAACCAAATATGAACCGATTGGAACAATAGCAGGTGCTGTTTATGGTGTTTGGGCTAAATATCGTCTCCAAATTACAGGCCGACCACCTTTAGAAGAGGTTTTGGAATTGCGGAAGAAGAACAAGGTTAGCAACTATCCTTTAACACATTTAAGGCTTTGA

Protein Analysis

220

Amino Acids

24.69

Weight (kDa)

8.97

Isoelectric Point (pI)

48.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCC1-like PF04134 85 - 195 1.4e-24 DCC1-like thiol-disulfide oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 524
AatII GACGTC 1 cut(s) 125
Acc36I ACCTGC 1 cut(s) 524
AciI CCGC 2 cut(s) 179, 613
AcyI GRCGYC 1 cut(s) 122
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 1 cut(s) 206
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 2 cut(s) 167, 348
AluI AGCT 2 cut(s) 167, 348
Alw26I GTCTC 1 cut(s) 572
AlwNI CAGNNNCTG 2 cut(s) 230, 539
AoxI GGCC 1 cut(s) 580
AsuC2I CCSGG 1 cut(s) 16
AsuHPI GGTGA 1 cut(s) 301
BanII GRGCYC 1 cut(s) 486
BccI CCATC 4 cut(s) 254, 422, 425, 483
BciT130I CCWGG 1 cut(s) 144
BcnI CCSGG 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 572
BfaI CTAG 2 cut(s) 150, 383
BfuAI ACCTGC 1 cut(s) 524
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 2 cut(s) 16, 144
BmiI GGNNCC 2 cut(s) 66, 433
BmrFI CCNGG 2 cut(s) 16, 144
BmsI GCATC 1 cut(s) 240
BpmI CTGGAG 2 cut(s) 68, 348
BpuMI CCSGG 1 cut(s) 16
BsaBI GATNNNNATC 1 cut(s) 49
BsaHI GRCGYC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 143
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse8I GATNNNNATC 1 cut(s) 49
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 143
BseGI GGATG 2 cut(s) 417, 494
BseJI GATNNNNATC 1 cut(s) 49
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMII CTCAG 4 cut(s) 125, 222, 290, 363
BseRI GAGGAG 1 cut(s) 99
BshFI GGCC 1 cut(s) 582
BsiSI CCGG 1 cut(s) 15
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 572
BsmBI CGTCTC 1 cut(s) 572
BsmI GAATGC 1 cut(s) 455
BsnI GGCC 1 cut(s) 582
Bsp1286I GDGCHC 1 cut(s) 486
BspACI CCGC 2 cut(s) 179, 613
BspANI GGCC 1 cut(s) 582
BspCNI CTCAG 4 cut(s) 124, 223, 291, 362
BspLI GGNNCC 2 cut(s) 66, 433
BspMI ACCTGC 1 cut(s) 524
BssECI CCNNGG 1 cut(s) 143
BssNI GRCGYC 1 cut(s) 122
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 2 cut(s) 397, 436
Bst6I CTCTTC 1 cut(s) 591
BstACI GRCGYC 1 cut(s) 122
BstDEI CTNAG 4 cut(s) 111, 231, 299, 349
BstF5I GGATG 2 cut(s) 417, 494
BstMAI GTCTC 1 cut(s) 572
BstMWI GCNNNNNNNGC 3 cut(s) 11, 85, 481
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 2 cut(s) 14, 142
BsuRI GGCC 1 cut(s) 582
BtsCI GGATG 2 cut(s) 417, 494
BveI ACCTGC 1 cut(s) 524
CaiI CAGNNNCTG 2 cut(s) 230, 539
Csp6I GTAC 1 cut(s) 324
CviAII CATG 1 cut(s) 413
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 4 cut(s) 111, 231, 299, 349
Eam1104I CTCTTC 1 cut(s) 591
EarI CTCTTC 1 cut(s) 591
Eco24I GRGCYC 1 cut(s) 486
Eco32I GATATC 1 cut(s) 74
EcoRII CCWGG 1 cut(s) 142
EcoRV GATATC 1 cut(s) 74
EcoT38I GRGCYC 1 cut(s) 486
Esp3I CGTCTC 1 cut(s) 572
FaeI CATG 1 cut(s) 416
FatI CATG 1 cut(s) 412
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 2 cut(s) 404, 501
FriOI GRGCYC 1 cut(s) 486
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 2 cut(s) 150, 383
GluI GCNGC 1 cut(s) 180
GsuI CTGGAG 2 cut(s) 68, 348
HaeIII GGCC 1 cut(s) 582
HapII CCGG 1 cut(s) 15
Hin1I GRCGYC 1 cut(s) 122
Hin1II CATG 1 cut(s) 416
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HinfI GANTC 2 cut(s) 187, 221
HpaII CCGG 1 cut(s) 15
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 2 cut(s) 272, 340
Hpy188I TCNGA 5 cut(s) 114, 352, 427, 461, 488
Hpy188III TCNNGA 2 cut(s) 150, 365
Hpy8I GTNNAC 2 cut(s) 272, 340
HpyAV CCTTC 1 cut(s) 30
HpyCH4III ACNGT 2 cut(s) 397, 436
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 2 cut(s) 79, 500
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 85, 481
HpyF3I CTNAG 4 cut(s) 111, 231, 299, 349
HpySE526I ACGT 1 cut(s) 122
Hsp92I GRCGYC 1 cut(s) 122
Hsp92II CATG 1 cut(s) 416
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 8 cut(s) 28, 98, 129, 156, 243, 378, 519, 564
LweI GCATC 1 cut(s) 240
MaeI CTAG 2 cut(s) 150, 383
MaeII ACGT 1 cut(s) 122
MaeIII GTNAC 2 cut(s) 193, 439
MboII GAAGA 4 cut(s) 253, 608, 628, 631
MhlI GDGCHC 1 cut(s) 486
MluCI AATT 4 cut(s) 132, 235, 573, 608
MseI TTAA 3 cut(s) 246, 644, 653
MspI CCGG 1 cut(s) 15
MspR9I CCNGG 2 cut(s) 16, 144
Mva1269I GAATGC 1 cut(s) 455
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 3 cut(s) 11, 85, 481
NciI CCSGG 1 cut(s) 16
NlaIII CATG 1 cut(s) 416
NlaIV GGNNCC 2 cut(s) 66, 433
PaqCI CACCTGC 1 cut(s) 524
PctI GAATGC 1 cut(s) 455
PfeI GAWTC 2 cut(s) 187, 221
PkrI GCNGC 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 66, 433
PsrI GAACNNNNNNTAC 2 cut(s) 424, 456
PstNI CAGNNNCTG 2 cut(s) 230, 539
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
SaqAI TTAA 3 cut(s) 246, 644, 653
SatI GCNGC 1 cut(s) 180
ScrFI CCNGG 2 cut(s) 16, 144
SduI GDGCHC 1 cut(s) 486
SfaNI GCATC 1 cut(s) 240
Sse9I AATT 4 cut(s) 132, 235, 573, 608
SsiI CCGC 2 cut(s) 179, 613
SspMI CTAG 2 cut(s) 150, 383
StyD4I CCNGG 2 cut(s) 14, 142
TaaI ACNGT 2 cut(s) 397, 436
TaiI ACGT 1 cut(s) 125
TaqI TCGA 2 cut(s) 70, 450
TasI AATT 4 cut(s) 132, 235, 573, 608
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 2 cut(s) 187, 221
Tru1I TTAA 3 cut(s) 246, 644, 653
Tru9I TTAA 3 cut(s) 246, 644, 653
TspDTI ATGAA 4 cut(s) 39, 125, 401, 528
XbaI TCTAGA 1 cut(s) 149
XspI CTAG 2 cut(s) 150, 383
ZraI GACGTC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.