Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0010102

Physical Location & Seq

Genomic Coordinates Forward (+)

20431150 .. 20433057

Gene Structure 1908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g15960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCAATGAGGGCAGCTGCTTCAGCATGTAAAATTGGAGGAAGGCAAAGAAGCCCTTCTCTCTCTTCAGTTGCTCTCTCTCTCCAACAACTCAAGCTCCATCAATTTCAACCCCAAAGATTCATATCGGCTCCTCCTCTTAACCAACCTGGGTTTAAGTCTTCAGTAAGGGCTATAAGTGGGGCAGCTGCAGATCCTATAACTCCAAAGAAAGAAAATGATCAAGAACAAACACCTCAGAATTGGAAGATTAAAATGCTCTATGACGGGGATTGCCCTTTATGCATGCGAGAGGTGGACATGCTGAGAGAGAGAAATAAGCGATATGGTACCATCAAGTTTGTTGACATAAGTTCAGATGACTACTCGCCAGAGGAGAATCAAGGGCTGGACTACAAGACTGTTATGGGAAACATTCATGCCATCCTCTCTGATGGAACTGTGGTCACTGATGTCAAAGCATTCAGAAAGCTCTACGAGCAAGTGGGGCTCGGATGGGTATATGCCATAACCAAATACGAACCTATTGCAACAATAGCTGGTGCTGTATATGGCGCTTGGGCTAAATATCGTCTTCAAATCACAGGCCGGCCACCCCTAGAAGAGGTTTTGGAGTTGCGAAAGAAGAACAAGGGAGAAGTATGTAAAGATGCAAAAAGTTGTAAACTTCCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0009888 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0031099 GO:0032502 GO:0040007 GO:0042060 GO:0042246 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048589 GO:0048856 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF393

Protein Analysis

226

Amino Acids

25.13

Weight (kDa)

9.2

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50100
fragaria_vesca	FvH4_5g16490
malus_domestica	MD06G1180000.v1.1 MD06G1180300.v1.1 MD14G1185400.v1.1
prunus_persica	Prupe.5G178100_v2.0.a1
pyrus_communis	pycom06g15960 pycom14g15430 pycom14g15890
rosa_chinensis	RchiOBHm_Chr7g0179601
rosa_laevigata	RLG00000005340
rosa_multiflora	Rmu_co8321565.1_g000001 Rmu_sc0005329.1_g000024
rosa_roxburghii	Rroxscaffold_155G00443890 Rroxscaffold_3G00273620
rosa_rugosa	Rorug06G0426500
rosa_samantha	Rh7AG025900 Rh7BG025200 Rh7CG026900 Rh7DG026500
rosa_wichuraiana	Rw7G002080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	329
AccB1I	GGYRCC	1 cut(s)	329
AclWI	GGATC	1 cut(s)	188
AcoI	YGGCCR	1 cut(s)	590
AcuI	CTGAAG	3 cut(s)	6, 51, 147
AfaI	GTAC	1 cut(s)	331
AfiI	CCNNNNNNNGG	1 cut(s)	604
AgsI	TTSAA	2 cut(s)	110, 578
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	5 cut(s)	17, 97, 188, 472, 539
AluI	AGCT	5 cut(s)	17, 97, 188, 472, 539
AlwI	GGATC	1 cut(s)	188
AoxI	GGCC	2 cut(s)	586, 590
ApeKI	GCWGC	4 cut(s)	14, 17, 185, 188
Asp700I	GAANNNNTTC	1 cut(s)	55
Asp718I	GGTACC	1 cut(s)	329
AspLEI	GCGC	1 cut(s)	557
BanI	GGYRCC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	492
BbsI	GAAGAC	2 cut(s)	153, 566
BbvI	GCAGC	4 cut(s)	4, 26, 175, 197
BccI	CCATC	5 cut(s)	108, 341, 428, 431, 489
BcgI	CGANNNNNNTGC	2 cut(s)	509, 543
BciT130I	CCWGG	1 cut(s)	150
BclI	TGATCA	1 cut(s)	220
BfaI	CTAG	1 cut(s)	599
BfmI	CTRYAG	1 cut(s)	189
BfoI	RGCGCY	1 cut(s)	558
BisI	GCNGC	4 cut(s)	15, 18, 186, 189
BlsI	GCNGC	4 cut(s)	16, 19, 187, 190
Bme1390I	CCNGG	1 cut(s)	150
BmiI	GGNNCC	2 cut(s)	132, 331
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	640
BpiI	GAAGAC	2 cut(s)	153, 566
BpuEI	CTTGAG	1 cut(s)	77
BsaBI	GATNNNNATC	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	1 cut(s)	604
Bse118I	RCCGGY	1 cut(s)	588
Bse3DI	GCAATG	1 cut(s)	12
Bse8I	GATNNNNATC	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	2 cut(s)	423, 500
BseJI	GATNNNNATC	1 cut(s)	124
BseLI	CCNNNNNNNGG	1 cut(s)	604
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	251, 296
BseRI	GAGGAG	3 cut(s)	123, 126, 389
BseXI	GCAGC	4 cut(s)	4, 26, 175, 197
BshFI	GGCC	2 cut(s)	588, 592
BshNI	GGYRCC	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	589
BslI	CCNNNNNNNGG	1 cut(s)	604
BsmI	GAATGC	1 cut(s)	461
BsnI	GGCC	2 cut(s)	588, 592
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp143I	GATC	2 cut(s)	193, 220
BspANI	GGCC	2 cut(s)	588, 592
BspCNI	CTCAG	2 cut(s)	250, 297
BspLI	GGNNCC	2 cut(s)	132, 331
BspMAI	CTGCAG	1 cut(s)	193
BspPI	GGATC	1 cut(s)	188
BspT107I	GGYRCC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	588
BssAI	RCCGGY	1 cut(s)	588
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	2 cut(s)	193, 220
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	403, 442
Bst6I	CTCTTC	2 cut(s)	70, 597
BstC8I	GCNNGC	2 cut(s)	287, 590
BstDEI	CTNAG	2 cut(s)	237, 305
BstENI	CCTNNNNNAGG	1 cut(s)	602
BstF5I	GGATG	2 cut(s)	423, 500
BstH2I	RGCGCY	1 cut(s)	558
BstHHI	GCGC	1 cut(s)	557
BstKTI	GATC	2 cut(s)	196, 223
BstMBI	GATC	2 cut(s)	193, 220
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 23, 282, 478, 487, 536
BstNI	CCWGG	1 cut(s)	150
BstNSI	RCATGY	3 cut(s)	30, 289, 304
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	1 cut(s)	189
BstV1I	GCAGC	4 cut(s)	4, 26, 175, 197
BstV2I	GAAGAC	2 cut(s)	153, 566
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuRI	GGCC	2 cut(s)	588, 592
BtsCI	GGATG	2 cut(s)	423, 500
BtsIMutI	CAGTG	1 cut(s)	447
Cac8I	GCNNGC	2 cut(s)	287, 590
CfoI	GCGC	1 cut(s)	557
Cfr10I	RCCGGY	1 cut(s)	588
Csp6I	GTAC	1 cut(s)	330
CviAII	CATG	4 cut(s)	27, 286, 301, 419
CviQI	GTAC	1 cut(s)	330
DdeI	CTNAG	2 cut(s)	237, 305
DpnI	GATC	2 cut(s)	195, 222
DpnII	GATC	2 cut(s)	193, 220
EaeI	YGGCCR	1 cut(s)	590
Eam1104I	CTCTTC	2 cut(s)	70, 597
EarI	CTCTTC	2 cut(s)	70, 597
Eco24I	GRGCYC	1 cut(s)	492
Eco57I	CTGAAG	3 cut(s)	6, 51, 147
EcoNI	CCTNNNNNAGG	1 cut(s)	602
EcoRII	CCWGG	1 cut(s)	148
EcoT22I	ATGCAT	1 cut(s)	287
EcoT38I	GRGCYC	1 cut(s)	492
FaeI	CATG	4 cut(s)	30, 289, 304, 422
FalI	AAGNNNNNCTT	2 cut(s)	40, 72
FatI	CATG	4 cut(s)	26, 285, 300, 418
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	4 cut(s)	15, 18, 186, 189
FokI	GGATG	2 cut(s)	410, 507
FriOI	GRGCYC	1 cut(s)	492
FseI	GGCCGGCC	1 cut(s)	592
Fsp4HI	GCNGC	4 cut(s)	15, 18, 186, 189
FspBI	CTAG	1 cut(s)	599
GlaI	GCGC	1 cut(s)	556
GluI	GCNGC	4 cut(s)	15, 18, 186, 189
HaeII	RGCGCY	1 cut(s)	558
HaeIII	GGCC	2 cut(s)	588, 592
HapII	CCGG	1 cut(s)	589
HhaI	GCGC	1 cut(s)	557
Hin1II	CATG	4 cut(s)	30, 289, 304, 422
Hin6I	GCGC	1 cut(s)	555
HinP1I	GCGC	1 cut(s)	555
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	2 cut(s)	120, 379
HpaII	CCGG	1 cut(s)	589
Hpy166II	GTNNAC	3 cut(s)	298, 346, 665
Hpy188I	TCNGA	5 cut(s)	240, 358, 433, 467, 494
Hpy188III	TCNNGA	2 cut(s)	224, 671
Hpy8I	GTNNAC	3 cut(s)	298, 346, 665
HpyAV	CCTTC	2 cut(s)	36, 66
HpyCH4III	ACNGT	2 cut(s)	403, 442
HpyCH4V	TGCA	4 cut(s)	191, 285, 530, 653
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 23, 282, 478, 487, 536
HpyF3I	CTNAG	2 cut(s)	237, 305
Hsp92II	CATG	4 cut(s)	30, 289, 304, 422
HspAI	GCGC	1 cut(s)	555
KpnI	GGTACC	1 cut(s)	333
KroI	GCCGGC	1 cut(s)	588
KroNI	GCCGGC	1 cut(s)	590
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	2 cut(s)	193, 220
LmnI	GCTCC	2 cut(s)	102, 136
LpnPI	CCDG	7 cut(s)	135, 162, 374, 384, 525, 570, 602
Lsp1109I	GCAGC	4 cut(s)	4, 26, 175, 197
LweI	GCATC	1 cut(s)	640
MaeI	CTAG	1 cut(s)	599
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	2 cut(s)	195, 222
MboI	GATC	2 cut(s)	193, 220
MboII	GAAGA	6 cut(s)	57, 153, 259, 566, 614, 637
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	492
MluCI	AATT	3 cut(s)	33, 104, 241
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	9 cut(s)	3, 32, 144, 147, 246, 286, 367, 437, 598
Mph1103I	ATGCAT	1 cut(s)	287
MroNI	GCCGGC	1 cut(s)	588
MroXI	GAANNNNTTC	1 cut(s)	55
MseI	TTAA	3 cut(s)	141, 156, 252
MspA1I	CMGCKG	2 cut(s)	17, 188
MspI	CCGG	1 cut(s)	589
MspR9I	CCNGG	1 cut(s)	150
Mva1269I	GAATGC	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	6 cut(s)	11, 23, 282, 478, 487, 536
NaeI	GCCGGC	1 cut(s)	590
NdeII	GATC	2 cut(s)	193, 220
NgoMIV	GCCGGC	1 cut(s)	588
NlaIII	CATG	4 cut(s)	30, 289, 304, 422
NlaIV	GGNNCC	2 cut(s)	132, 331
NmuCI	GTSAC	1 cut(s)	445
NsiI	ATGCAT	1 cut(s)	287
NspI	RCATGY	3 cut(s)	30, 289, 304
PaeI	GCATGC	1 cut(s)	289
PctI	GAATGC	1 cut(s)	461
PdiI	GCCGGC	1 cut(s)	590
PdmI	GAANNNNTTC	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	120, 379
PkrI	GCNGC	4 cut(s)	16, 19, 187, 190
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	2 cut(s)	132, 331
PstI	CTGCAG	1 cut(s)	193
PsuI	RGATCY	1 cut(s)	193
PvuII	CAGCTG	2 cut(s)	17, 188
RigI	GGCCGGCC	1 cut(s)	592
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
SaqAI	TTAA	3 cut(s)	141, 156, 252
SatI	GCNGC	4 cut(s)	15, 18, 186, 189
Sau3AI	GATC	2 cut(s)	193, 220
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	1 cut(s)	492
SfaNI	GCATC	1 cut(s)	640
SfcI	CTRYAG	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
SphI	GCATGC	1 cut(s)	289
Sse9I	AATT	3 cut(s)	33, 104, 241
SspMI	CTAG	1 cut(s)	599
StyD4I	CCNGG	1 cut(s)	148
TaaI	ACNGT	2 cut(s)	403, 442
TasI	AATT	3 cut(s)	33, 104, 241
TfiI	GAWTC	2 cut(s)	120, 379
Tru1I	TTAA	3 cut(s)	141, 156, 252
Tru9I	TTAA	3 cut(s)	141, 156, 252
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	4 cut(s)	14, 17, 185, 188
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	2 cut(s)	112, 407
TspRI	CASTG	1 cut(s)	454
XagI	CCTNNNNNAGG	1 cut(s)	602
XceI	RCATGY	3 cut(s)	30, 289, 304
XmnI	GAANNNNTTC	1 cut(s)	55
XspI	CTAG	1 cut(s)	599
Zsp2I	ATGCAT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.