Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0010102

Physical Location & Seq

Genomic Coordinates Forward (+)

18353915 .. 18360646

Gene Structure 6732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g15890.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCAATGAAAGCAGCTGCTTCCGCATGTAAAATTGGAGGGAGACAAAGAAACCCTTCTCTCTCATCAATTCCTCTCTCTCTCCAACAACTCAAAGTTCATCAGATTCATCATCCCCAAAGATTCATCTCAGCTCCTATTCACCAACATGGGTTTAAGTCTTCAACAAGGGCTATTAGCGGGGCAGCTGCAGACCCCATGACTCCAAATACAAAAAATGGTCAAGAACAAACACCTCAGAATTGGAAGATTAAAATGCTCTTTGATGGGGATTGCCCTTTATGCATGCGAGAGGTGGACATGCTGCGAGAGAGAAATAAGCGTTATGGTACTATCAAGTTTGTTGACATAAGTTCAGATGATTACTCCCCGGAGGAGAATCAGGGGCTGGACTACAAGACTGTTATGGGAAACATTCATGCCATCCTCTCTGATGGAACTGTAGTCACTGATGTCGAAGCATTCAGAAAGCTATACGAACAGGTGGGGCTCGGATGGGTATATGCCATAACTAAATACGAGCCTATTGCAACAATAGCAGGTGCTGTATATGGCGTTTGGGCTAAATATCGTCTTCAAATCACAGGCCGGCCACCTCTAGAAGAGGTTTTGGAGTTGCGAAAGAAGAACAAGGGAGAAGTATGTAAAGATCCAAAAGATTGTAAACTCCCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0009888 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0031099 GO:0032502 GO:0040007 GO:0042060 GO:0042246 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048589 GO:0048856 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF393

Protein Analysis

226

Amino Acids

25.22

Weight (kDa)

9.01

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50100
fragaria_vesca	FvH4_5g16490
malus_domestica	MD06G1180000.v1.1 MD06G1180300.v1.1 MD14G1185400.v1.1
prunus_persica	Prupe.5G178100_v2.0.a1
pyrus_communis	pycom06g15960 pycom14g15430 pycom14g15890
rosa_chinensis	RchiOBHm_Chr7g0179601
rosa_laevigata	RLG00000005340
rosa_multiflora	Rmu_co8321565.1_g000001 Rmu_sc0005329.1_g000024
rosa_roxburghii	Rroxscaffold_155G00443890 Rroxscaffold_3G00273620
rosa_rugosa	Rorug06G0426500
rosa_samantha	Rh7AG025900 Rh7BG025200 Rh7CG026900 Rh7DG026500
rosa_wichuraiana	Rw7G002080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	530
Acc36I	ACCTGC	1 cut(s)	530
AciI	CCGC	2 cut(s)	24, 180
AclWI	GGATC	1 cut(s)	644
AcoI	YGGCCR	1 cut(s)	590
AfaI	GTAC	1 cut(s)	331
AgsI	TTSAA	2 cut(s)	165, 578
AluBI	AGCT	4 cut(s)	17, 134, 188, 472
AluI	AGCT	4 cut(s)	17, 134, 188, 472
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	644
AlwNI	CAGNNNCTG	2 cut(s)	388, 545
AoxI	GGCC	2 cut(s)	586, 590
ApeKI	GCWGC	5 cut(s)	14, 17, 185, 188, 304
Asp700I	GAANNNNTTC	1 cut(s)	55
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	492
BbsI	GAAGAC	2 cut(s)	153, 566
BbvI	GCAGC	5 cut(s)	4, 26, 175, 197, 291
BccI	CCATC	4 cut(s)	260, 428, 431, 489
BcgI	CGANNNNNNTGC	2 cut(s)	509, 543
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	599
BfmI	CTRYAG	2 cut(s)	189, 441
BfuAI	ACCTGC	1 cut(s)	530
BisI	GCNGC	5 cut(s)	15, 18, 186, 189, 305
BlsI	GCNGC	5 cut(s)	16, 19, 187, 190, 306
Bme1390I	CCNGG	1 cut(s)	371
BmrFI	CCNGG	1 cut(s)	371
BpiI	GAAGAC	2 cut(s)	153, 566
BpuMI	CCSGG	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	369
Bse118I	RCCGGY	1 cut(s)	588
Bse3DI	GCAATG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	3 cut(s)	112, 423, 500
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	144, 251
BseRI	GAGGAG	1 cut(s)	389
BseXI	GCAGC	5 cut(s)	4, 26, 175, 197, 291
BshFI	GGCC	2 cut(s)	588, 592
BsiSI	CCGG	2 cut(s)	371, 589
BsmAI	GTCTC	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	461
BsnI	GGCC	2 cut(s)	588, 592
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp143I	GATC	1 cut(s)	649
BspACI	CCGC	2 cut(s)	24, 180
BspANI	GGCC	2 cut(s)	588, 592
BspCNI	CTCAG	2 cut(s)	143, 250
BspMAI	CTGCAG	1 cut(s)	193
BspMI	ACCTGC	1 cut(s)	530
BspPI	GGATC	1 cut(s)	644
BsrDI	GCAATG	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	588
BssAI	RCCGGY	1 cut(s)	588
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	1 cut(s)	649
Bst4CI	ACNGT	2 cut(s)	403, 442
Bst6I	CTCTTC	1 cut(s)	597
BstC8I	GCNNGC	2 cut(s)	287, 590
BstDEI	CTNAG	2 cut(s)	130, 237
BstF5I	GGATG	3 cut(s)	112, 423, 500
BstKTI	GATC	1 cut(s)	652
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	649
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 23, 282, 536
BstNSI	RCATGY	3 cut(s)	30, 289, 304
BstSCI	CCNGG	1 cut(s)	369
BstSFI	CTRYAG	2 cut(s)	189, 441
BstV1I	GCAGC	5 cut(s)	4, 26, 175, 197, 291
BstV2I	GAAGAC	2 cut(s)	153, 566
BstX2I	RGATCY	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	649
BsuRI	GGCC	2 cut(s)	588, 592
BtsCI	GGATG	3 cut(s)	112, 423, 500
BtsIMutI	CAGTG	1 cut(s)	447
BveI	ACCTGC	1 cut(s)	530
Cac8I	GCNNGC	2 cut(s)	287, 590
CaiI	CAGNNNCTG	2 cut(s)	388, 545
Cfr10I	RCCGGY	1 cut(s)	588
Csp6I	GTAC	1 cut(s)	330
CviAII	CATG	6 cut(s)	27, 149, 199, 286, 301, 419
CviQI	GTAC	1 cut(s)	330
DdeI	CTNAG	2 cut(s)	130, 237
DpnI	GATC	1 cut(s)	651
DpnII	GATC	1 cut(s)	649
EaeI	YGGCCR	1 cut(s)	590
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
Eco24I	GRGCYC	1 cut(s)	492
EcoT22I	ATGCAT	1 cut(s)	287
EcoT38I	GRGCYC	1 cut(s)	492
FaeI	CATG	6 cut(s)	30, 152, 202, 289, 304, 422
FalI	AAGNNNNNCTT	2 cut(s)	40, 72
FatI	CATG	6 cut(s)	26, 148, 198, 285, 300, 418
FauI	CCCGC	1 cut(s)	173
Fnu4HI	GCNGC	5 cut(s)	15, 18, 186, 189, 305
FokI	GGATG	3 cut(s)	99, 410, 507
FriOI	GRGCYC	1 cut(s)	492
FseI	GGCCGGCC	1 cut(s)	592
Fsp4HI	GCNGC	5 cut(s)	15, 18, 186, 189, 305
FspBI	CTAG	1 cut(s)	599
GluI	GCNGC	5 cut(s)	15, 18, 186, 189, 305
HaeIII	GGCC	2 cut(s)	588, 592
HapII	CCGG	2 cut(s)	371, 589
Hin1II	CATG	6 cut(s)	30, 152, 202, 289, 304, 422
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	4 cut(s)	106, 123, 202, 379
HpaII	CCGG	2 cut(s)	371, 589
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	3 cut(s)	298, 346, 665
Hpy188I	TCNGA	6 cut(s)	105, 240, 358, 433, 467, 494
Hpy188III	TCNNGA	2 cut(s)	224, 599
Hpy8I	GTNNAC	3 cut(s)	298, 346, 665
HpyAV	CCTTC	1 cut(s)	66
HpyCH4III	ACNGT	2 cut(s)	403, 442
HpyCH4V	TGCA	3 cut(s)	191, 285, 530
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 23, 282, 536
HpyF3I	CTNAG	2 cut(s)	130, 237
Hsp92II	CATG	6 cut(s)	30, 152, 202, 289, 304, 422
KroI	GCCGGC	1 cut(s)	588
KroNI	GCCGGC	1 cut(s)	590
Kzo9I	GATC	1 cut(s)	649
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	7 cut(s)	368, 374, 384, 467, 525, 570, 602
Lsp1109I	GCAGC	5 cut(s)	4, 26, 175, 197, 291
MaeI	CTAG	1 cut(s)	599
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	1 cut(s)	651
MboI	GATC	1 cut(s)	649
MboII	GAAGA	5 cut(s)	153, 259, 566, 614, 637
MflI	RGATCY	1 cut(s)	649
MhlI	GDGCHC	1 cut(s)	492
MluCI	AATT	3 cut(s)	33, 69, 241
MlyI	GAGTC	1 cut(s)	196
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	8 cut(s)	32, 84, 246, 286, 367, 437, 598, 606
Mph1103I	ATGCAT	1 cut(s)	287
MroNI	GCCGGC	1 cut(s)	588
MroXI	GAANNNNTTC	1 cut(s)	55
MseI	TTAA	2 cut(s)	156, 252
MslI	CAYNNNNRTG	1 cut(s)	147
MspA1I	CMGCKG	2 cut(s)	17, 188
MspI	CCGG	2 cut(s)	371, 589
MspR9I	CCNGG	1 cut(s)	371
Mva1269I	GAATGC	1 cut(s)	461
MwoI	GCNNNNNNNGC	4 cut(s)	11, 23, 282, 536
NaeI	GCCGGC	1 cut(s)	590
NciI	CCSGG	1 cut(s)	371
NdeII	GATC	1 cut(s)	649
NgoMIV	GCCGGC	1 cut(s)	588
NlaIII	CATG	6 cut(s)	30, 152, 202, 289, 304, 422
NmuCI	GTSAC	1 cut(s)	445
NsiI	ATGCAT	1 cut(s)	287
NspI	RCATGY	3 cut(s)	30, 289, 304
PaeI	GCATGC	1 cut(s)	289
PaqCI	CACCTGC	1 cut(s)	530
PctI	GAATGC	1 cut(s)	461
PdiI	GCCGGC	1 cut(s)	590
PdmI	GAANNNNTTC	1 cut(s)	55
PfeI	GAWTC	3 cut(s)	106, 123, 379
PkrI	GCNGC	5 cut(s)	16, 19, 187, 190, 306
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PstI	CTGCAG	1 cut(s)	193
PstNI	CAGNNNCTG	2 cut(s)	388, 545
PsuI	RGATCY	1 cut(s)	649
PvuII	CAGCTG	2 cut(s)	17, 188
RigI	GGCCGGCC	1 cut(s)	592
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
RseI	CAYNNNNRTG	1 cut(s)	147
SaqAI	TTAA	2 cut(s)	156, 252
SatI	GCNGC	5 cut(s)	15, 18, 186, 189, 305
Sau3AI	GATC	1 cut(s)	649
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	1 cut(s)	492
SfcI	CTRYAG	2 cut(s)	189, 441
SmiMI	CAYNNNNRTG	1 cut(s)	147
SphI	GCATGC	1 cut(s)	289
Sse9I	AATT	3 cut(s)	33, 69, 241
SsiI	CCGC	2 cut(s)	24, 180
SspMI	CTAG	1 cut(s)	599
StyD4I	CCNGG	1 cut(s)	369
TaaI	ACNGT	2 cut(s)	403, 442
TaqI	TCGA	1 cut(s)	456
TasI	AATT	3 cut(s)	33, 69, 241
TfiI	GAWTC	3 cut(s)	106, 123, 379
Tru1I	TTAA	2 cut(s)	156, 252
Tru9I	TTAA	2 cut(s)	156, 252
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	5 cut(s)	14, 17, 185, 188, 304
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	5 cut(s)	23, 89, 98, 115, 407
TspRI	CASTG	1 cut(s)	454
XbaI	TCTAGA	1 cut(s)	598
XceI	RCATGY	3 cut(s)	30, 289, 304
XmnI	GAANNNNTTC	1 cut(s)	55
XspI	CTAG	1 cut(s)	599
Zsp2I	ATGCAT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.