Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010102

Physical Location & Seq

Genomic Coordinates Reverse (-)

65346042 .. 65348438

Gene Structure 2397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00273620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCTTTGAGAGCAGGGTGTAGTAGTATTGGAGGAAGGCAAAGATGTTCATCTCTGTTATCGGTTCCTCGATATCTACAGCTCCAGGCTCATCTTCCTCACTCTGCTCCTCAGAGGTTCACATCATTTCCAATTCATCAACCTAGGTTTAGATTTGGAATGAGAGCTATAAGTGAAGCGGCTGTGAATCCCGTAACTCCCAAGAAAGGAGATGAACGAGAATCAGCACCTGAGAATTGGAAGATTAAGATGCTGTATGATGGGGATTGTCCACTATGCATGAGAGAGGTGAATATGCTGAGAGAGAGAAACAAGAGTTATGGTACTATCAAGTTTGTGGACATAAGCTCAGAGGATTATTCTCCGGAGGATAATATGGGGCTAGACTACAAAACTGTTATGGGAAACATTCATGCCATCCTCTCTGATGGAACCGTAGTTACTGATGTCGAAGCATTCAGAAAGTTATATGAGCAAGTTGGGCTCGGATGGGTCTATGCAATAACCAAATATGAACCGATTGGAACAATAGCAGGTGCTGTTTATGGTGTTTGGGCTAAATATCGTCTCCAAATTACAGGCCGACCACCTTTAGAAGAGGTTTTGGAATTGCGGAAGAAGAACAAGGGAGAATTATGTAATGACAGAACTGATTGTAAACTACCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0008150 GO:0008152 GO:0009611 GO:0009888 GO:0015035 GO:0015036 GO:0016491 GO:0016667 GO:0031099 GO:0032502 GO:0040007 GO:0042060 GO:0042246 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048589 GO:0048856 GO:0050896 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF393

Protein Analysis

223

Amino Acids

25.22

Weight (kDa)

8.68

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DCC1-like	PF04134	85 - 195	1.4e-24	DCC1-like thiol-disulfide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50100
fragaria_vesca	FvH4_5g16490
malus_domestica	MD06G1180000.v1.1 MD06G1180300.v1.1 MD14G1185400.v1.1
prunus_persica	Prupe.5G178100_v2.0.a1
pyrus_communis	pycom06g15960 pycom14g15430 pycom14g15890
rosa_chinensis	RchiOBHm_Chr7g0179601
rosa_laevigata	RLG00000005340
rosa_multiflora	Rmu_co8321565.1_g000001 Rmu_sc0005329.1_g000024
rosa_roxburghii	Rroxscaffold_155G00443890 Rroxscaffold_3G00273620
rosa_rugosa	Rorug06G0426500
rosa_samantha	Rh7AG025900 Rh7BG025200 Rh7CG026900 Rh7DG026500
rosa_wichuraiana	Rw7G002080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	524
Acc36I	ACCTGC	1 cut(s)	524
AccIII	TCCGGA	1 cut(s)	364
AciI	CCGC	2 cut(s)	179, 613
AfaI	GTAC	1 cut(s)	325
AfiI	CCNNNNNNNGG	1 cut(s)	206
AjnI	CCWGG	1 cut(s)	84
AluBI	AGCT	3 cut(s)	82, 167, 348
AluI	AGCT	3 cut(s)	82, 167, 348
Alw26I	GTCTC	1 cut(s)	572
AlwNI	CAGNNNCTG	2 cut(s)	230, 539
Aor13HI	TCCGGA	1 cut(s)	364
AoxI	GGCC	1 cut(s)	580
AspA2I	CCTAGG	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	301
AvrII	CCTAGG	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	486
BccI	CCATC	4 cut(s)	254, 422, 425, 483
BciT130I	CCWGG	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	572
BfaI	CTAG	2 cut(s)	144, 383
BfmI	CTRYAG	1 cut(s)	77
BfuAI	ACCTGC	1 cut(s)	524
BisI	GCNGC	1 cut(s)	180
BlnI	CCTAGG	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	181
Bme1390I	CCNGG	1 cut(s)	86
BmiI	GGNNCC	2 cut(s)	66, 433
BmrFI	CCNGG	1 cut(s)	86
BmsI	GCATC	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	68
BsaBI	GATNNNNATC	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	143
BsaWI	WCCGGW	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse8I	GATNNNNATC	1 cut(s)	49
BseAI	TCCGGA	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	1 cut(s)	143
BseGI	GGATG	2 cut(s)	417, 494
BseJI	GATNNNNATC	1 cut(s)	49
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMII	CTCAG	4 cut(s)	125, 222, 290, 363
BseRI	GAGGAG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	582
BsiSI	CCGG	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	572
BsmBI	CGTCTC	1 cut(s)	572
BsmI	GAATGC	1 cut(s)	455
BsnI	GGCC	1 cut(s)	582
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp13I	TCCGGA	1 cut(s)	364
BspACI	CCGC	2 cut(s)	179, 613
BspANI	GGCC	1 cut(s)	582
BspCNI	CTCAG	4 cut(s)	124, 223, 291, 362
BspEI	TCCGGA	1 cut(s)	364
BspLI	GGNNCC	2 cut(s)	66, 433
BspMI	ACCTGC	1 cut(s)	524
BssECI	CCNNGG	1 cut(s)	143
BssT1I	CCWWGG	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	2 cut(s)	397, 436
Bst6I	CTCTTC	1 cut(s)	591
BstDEI	CTNAG	4 cut(s)	111, 231, 299, 349
BstF5I	GGATG	2 cut(s)	417, 494
BstMAI	GTCTC	1 cut(s)	572
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 481
BstNI	CCWGG	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	84
BstSFI	CTRYAG	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	582
BtsCI	GGATG	2 cut(s)	417, 494
BveI	ACCTGC	1 cut(s)	524
CaiI	CAGNNNCTG	2 cut(s)	230, 539
Csp6I	GTAC	1 cut(s)	324
CviAII	CATG	2 cut(s)	280, 413
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	4 cut(s)	111, 231, 299, 349
Eam1104I	CTCTTC	1 cut(s)	591
EarI	CTCTTC	1 cut(s)	591
Eco130I	CCWWGG	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	486
Eco32I	GATATC	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	84
EcoRV	GATATC	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	143
EcoT22I	ATGCAT	1 cut(s)	281
EcoT38I	GRGCYC	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	143
Esp3I	CGTCTC	1 cut(s)	572
FaeI	CATG	2 cut(s)	283, 416
FatI	CATG	2 cut(s)	279, 412
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	2 cut(s)	404, 501
FriOI	GRGCYC	1 cut(s)	486
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	2 cut(s)	144, 383
GluI	GCNGC	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	582
HapII	CCGG	1 cut(s)	365
Hin1II	CATG	2 cut(s)	283, 416
HinfI	GANTC	2 cut(s)	187, 221
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	4 cut(s)	120, 272, 340, 659
Hpy188I	TCNGA	5 cut(s)	114, 352, 427, 461, 488
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	4 cut(s)	120, 272, 340, 659
HpyAV	CCTTC	1 cut(s)	30
HpyCH4III	ACNGT	2 cut(s)	397, 436
HpyCH4V	TGCA	2 cut(s)	279, 500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 481
HpyF3I	CTNAG	4 cut(s)	111, 231, 299, 349
Hsp92II	CATG	2 cut(s)	283, 416
Kpn2I	TCCGGA	1 cut(s)	364
LmnI	GCTCC	2 cut(s)	87, 112
LpnPI	CCDG	6 cut(s)	71, 98, 243, 378, 519, 564
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	2 cut(s)	144, 383
MaeIII	GTNAC	2 cut(s)	193, 439
MboII	GAAGA	5 cut(s)	86, 253, 608, 628, 631
MhlI	GDGCHC	1 cut(s)	486
MluCI	AATT	5 cut(s)	132, 235, 573, 608, 632
Mph1103I	ATGCAT	1 cut(s)	281
MroI	TCCGGA	1 cut(s)	364
MseI	TTAA	1 cut(s)	246
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	11, 481
NlaIII	CATG	2 cut(s)	283, 416
NlaIV	GGNNCC	2 cut(s)	66, 433
NsiI	ATGCAT	1 cut(s)	281
PaqCI	CACCTGC	1 cut(s)	524
PctI	GAATGC	1 cut(s)	455
PfeI	GAWTC	2 cut(s)	187, 221
PkrI	GCNGC	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	66, 433
PsrI	GAACNNNNNNTAC	2 cut(s)	424, 456
PstNI	CAGNNNCTG	2 cut(s)	230, 539
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	1 cut(s)	180
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	486
SfaNI	GCATC	1 cut(s)	240
SfcI	CTRYAG	1 cut(s)	77
Sse9I	AATT	5 cut(s)	132, 235, 573, 608, 632
SsiI	CCGC	2 cut(s)	179, 613
SspMI	CTAG	2 cut(s)	144, 383
StyD4I	CCNGG	1 cut(s)	84
StyI	CCWWGG	1 cut(s)	143
TaaI	ACNGT	2 cut(s)	397, 436
TaqI	TCGA	2 cut(s)	70, 450
TasI	AATT	5 cut(s)	132, 235, 573, 608, 632
TauI	GCSGC	1 cut(s)	182
TfiI	GAWTC	2 cut(s)	187, 221
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TspDTI	ATGAA	5 cut(s)	39, 125, 228, 401, 528
XmaJI	CCTAGG	1 cut(s)	143
XspI	CTAG	2 cut(s)	144, 383
Zsp2I	ATGCAT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.