FvH4_5g18360

Peptidoglycan-binding LysM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013680
Physical Location & Seq
Forward (+)
10555808 .. 10558360
2553 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18360.t1

Sequence Viewer

Length: 918 bp
ATGAATCAGGTTGCTGATATTAAGAGGATGAATGGGTTTGCTACGGATCTTCAGATGTTTGCTTTGAAGACCTTGAAAATTCCTTTACCTGGAAGACACTCACCATCTACTGCACAAGAAAGCAACGGTGAAAAGTTGTCATCTGGTTGTGGACAGTCTAATGTGCTGCCGCCTTTCCGATCTGTAGGTTCAAGAGCTCCCCGAGATAAGGTTACTACAGCAATGAGCAGTTTGCAGAAATACTATGGTCTAAAACCTCCTAGTCGGAGGGCCTCGAGTGAAGGCATGGAGATGGCTGTTTATAGAAGTAGAAGTTCTGAAGACTTTGAGGATGGGTTGTTGTCAAAGGCCTCGCCGTTTTCTGATTCTCAAAATCACCATAGCATGACTAGACGGTTTTCTGTTGGTCAGTTGTCTGAGAATGGTGCTTTGGGTGATTACTTTGCAGACTCCATGGATGGGGAGGGTGAGAAATCTGATGATAAGTCGGTCCGGAGGCGTCAGAAGGTGGAAGTTGAAAATGGGAATGTCACACCAGAGAGGATGTTGAAAGGGGAAAACAGTGGTGGGAGGAGTGGTTTCTCAGCCTCAACAGGAAAGGGTTTAGCCATGAGGCCGAAATCAGCAAGCCGGGCAGTGCTGCAATCCGAGTCGGATGGAGGATGGTTGAACTCTATCCCGGTGGGACTGGGAGAGTCTATCATGACCACTGATGAAGTGGCTGTTGTTCGCAAATCATCAAGCACCCCAAGCTTAAAAGAGGAAGAAAATAACAGCTCAGCATCAGTTTGGCCAACTTCAAGGTGGAGCTTGAAAACAGATTTGCAAGCTCTTTCAAATGCAGCATCTATCACCAGACCAATCTTTGATGGCTTACCGAAACCAATAACTGGCCGCTGGAAAACTGCCCTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

306

Amino Acids

33.0

Weight (kDa)

9.36

Isoelectric Point (pI)

57.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013680)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18360 FvH4_5g18360
malus_domestica MD06G1239300.v1.1 MD14G1245200.v1.1
prunus_persica Prupe.5G243200_v2.0.a1
pyrus_communis pycom06g21490 pycom14g20620
rosa_chinensis RchiOBHm_Chr7g0177231
rosa_laevigata RLG00000005554
rosa_multiflora Rmu_sc0005310.1_g000015 Rmu_sc0024964.1_g000001
rosa_roxburghii Rroxscaffold_3G00276030
rosa_rugosa Rorug06G0404000
rosa_samantha Rh7AG004000 Rh7BG003800 Rh7CG003700 Rh7DG003700
rosa_wichuraiana Rw7G000320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 890
AccIII TCCGGA 1 cut(s) 492
AciI CCGC 2 cut(s) 170, 895
AclWI GGATC 1 cut(s) 54
AcoI YGGCCR 2 cut(s) 791, 892
AcsI RAATTY 1 cut(s) 78
AcuI CTGAAG 2 cut(s) 35, 339
AcyI GRCGYC 1 cut(s) 499
AfiI CCNNNNNNNGG 4 cut(s) 89, 208, 459, 890
AgsI TTSAA 9 cut(s) 67, 76, 192, 518, 550, 670, 801, 814, 837
AjnI CCWGG 1 cut(s) 88
AjuI GAANNNNNNNTTGG 2 cut(s) 413, 445
AluBI AGCT 5 cut(s) 197, 753, 777, 810, 830
AluI AGCT 5 cut(s) 197, 753, 777, 810, 830
Alw21I GWGCWC 1 cut(s) 199
AlwI GGATC 1 cut(s) 54
Ama87I CYCGRG 2 cut(s) 201, 274
Aor13HI TCCGGA 1 cut(s) 492
AoxI GGCC 5 cut(s) 270, 348, 614, 791, 892
ApeKI GCWGC 3 cut(s) 166, 640, 842
ApoI RAATTY 1 cut(s) 78
AspS9I GGNCC 2 cut(s) 270, 490
AsuC2I CCSGG 2 cut(s) 632, 680
AsuHPI GGTGA 6 cut(s) 93, 140, 368, 446, 479, 844
AvaI CYCGRG 2 cut(s) 201, 274
AvaII GGWCC 1 cut(s) 490
BalI TGGCCA 1 cut(s) 793
BanII GRGCYC 1 cut(s) 199
BbsI GAAGAC 3 cut(s) 74, 100, 327
Bbv12I GWGCWC 1 cut(s) 199
BbvI GCAGC 3 cut(s) 153, 627, 854
BccI CCATC 7 cut(s) 112, 286, 326, 452, 650, 657, 863
BceAI ACGGC 1 cut(s) 340
BciT130I CCWGG 1 cut(s) 90
BcnI CCSGG 2 cut(s) 632, 680
BfaI CTAG 2 cut(s) 261, 390
BfmI CTRYAG 2 cut(s) 183, 216
BisI GCNGC 5 cut(s) 167, 170, 641, 843, 895
BlpI GCTNAGC 1 cut(s) 778
BlsI GCNGC 5 cut(s) 168, 171, 642, 844, 896
Bme1390I CCNGG 3 cut(s) 90, 632, 680
Bme18I GGWCC 1 cut(s) 490
BmeT110I CYCGRG 2 cut(s) 201, 274
BmgT120I GGNCC 2 cut(s) 270, 490
BmrFI CCNGG 3 cut(s) 90, 632, 680
BmrI ACTGGG 1 cut(s) 698
BmsI GCATC 2 cut(s) 791, 854
BmuI ACTGGG 1 cut(s) 698
BpiI GAAGAC 3 cut(s) 74, 100, 327
Bpu1102I GCTNAGC 1 cut(s) 778
BpuMI CCSGG 2 cut(s) 632, 680
BsaHI GRCGYC 1 cut(s) 499
BsaJI CCNNGG 1 cut(s) 453
BsaWI WCCGGW 1 cut(s) 492
BsaXI ACNNNNNCTCC 2 cut(s) 562, 592
Bsc4I CCNNNNNNNGG 4 cut(s) 89, 208, 459, 890
Bse1I ACTGG 2 cut(s) 693, 895
Bse3DI GCAATG 1 cut(s) 228
BseAI TCCGGA 1 cut(s) 492
BseBI CCWGG 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 453
BseGI GGATG 6 cut(s) 33, 337, 463, 549, 661, 668
BseLI CCNNNNNNNGG 4 cut(s) 89, 208, 459, 890
BseMI GCAATG 1 cut(s) 228
BseMII CTCAG 3 cut(s) 408, 597, 792
BseNI ACTGG 2 cut(s) 693, 895
BseRI GAGGAG 1 cut(s) 586
BseXI GCAGC 3 cut(s) 153, 627, 854
BsgI GTGCAG 1 cut(s) 96
BshFI GGCC 5 cut(s) 272, 350, 616, 793, 894
BsiHKAI GWGCWC 1 cut(s) 199
BsiHKCI CYCGRG 2 cut(s) 201, 274
BsiSI CCGG 3 cut(s) 493, 631, 680
BslFI GGGAC 1 cut(s) 699
BslI CCNNNNNNNGG 4 cut(s) 89, 208, 459, 890
BsmFI GGGAC 1 cut(s) 699
BsnI GGCC 5 cut(s) 272, 350, 616, 793, 894
BsoBI CYCGRG 2 cut(s) 201, 274
Bsp1286I GDGCHC 1 cut(s) 199
Bsp13I TCCGGA 1 cut(s) 492
Bsp143I GATC 2 cut(s) 46, 179
Bsp1720I GCTNAGC 1 cut(s) 778
Bsp19I CCATGG 1 cut(s) 453
BspACI CCGC 2 cut(s) 170, 895
BspANI GGCC 5 cut(s) 272, 350, 616, 793, 894
BspCNI CTCAG 3 cut(s) 409, 596, 791
BspEI TCCGGA 1 cut(s) 492
BspHI TCATGA 1 cut(s) 702
BspPI GGATC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 228
BsrI ACTGG 2 cut(s) 693, 895
BssECI CCNNGG 1 cut(s) 453
BssMI GATC 2 cut(s) 46, 179
BssNI GRCGYC 1 cut(s) 499
BssT1I CCWWGG 1 cut(s) 453
Bst2UI CCWGG 1 cut(s) 90
Bst4CI ACNGT 4 cut(s) 128, 156, 396, 563
BstACI GRCGYC 1 cut(s) 499
BstC8I GCNNGC 2 cut(s) 628, 828
BstDEI CTNAG 3 cut(s) 417, 583, 778
BstDSI CCRYGG 1 cut(s) 453
BstF5I GGATG 6 cut(s) 33, 337, 463, 549, 661, 668
BstKTI GATC 2 cut(s) 49, 182
BstMBI GATC 2 cut(s) 46, 179
BstMWI GCNNNNNNNGC 2 cut(s) 632, 750
BstNI CCWGG 1 cut(s) 90
BstSCI CCNGG 3 cut(s) 88, 630, 678
BstSFI CTRYAG 2 cut(s) 183, 216
BstV1I GCAGC 3 cut(s) 153, 627, 854
BstV2I GAAGAC 3 cut(s) 74, 100, 327
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BsuRI GGCC 5 cut(s) 272, 350, 616, 793, 894
BtgI CCRYGG 1 cut(s) 453
BtsCI GGATG 6 cut(s) 33, 337, 463, 549, 661, 668
BtsI GCAGTG 1 cut(s) 642
BtsIMutI CAGTG 3 cut(s) 568, 642, 708
Cac8I GCNNGC 2 cut(s) 628, 828
CciI TCATGA 1 cut(s) 702
Cfr13I GGNCC 2 cut(s) 270, 490
CpoI CGGWCCG 1 cut(s) 490
CseI GACGC 1 cut(s) 488
CspI CGGWCCG 1 cut(s) 490
CviAII CATG 5 cut(s) 286, 385, 454, 610, 703
DdeI CTNAG 3 cut(s) 417, 583, 778
DpnI GATC 2 cut(s) 48, 181
DpnII GATC 2 cut(s) 46, 179
EaeI YGGCCR 2 cut(s) 791, 892
Ecl136II GAGCTC 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 453
Eco147I AGGCCT 1 cut(s) 350
Eco24I GRGCYC 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 490
Eco53kI GAGCTC 1 cut(s) 197
Eco57I CTGAAG 2 cut(s) 35, 339
Eco88I CYCGRG 2 cut(s) 201, 274
EcoICRI GAGCTC 1 cut(s) 197
EcoO109I RGGNCCY 1 cut(s) 270
EcoRII CCWGG 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 453
EcoT38I GRGCYC 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 453
FaeI CATG 5 cut(s) 289, 388, 457, 613, 706
FaiI YATR 8 cut(s) 246, 287, 303, 381, 386, 455, 611, 704
FaqI GGGAC 1 cut(s) 699
FatI CATG 5 cut(s) 285, 384, 453, 609, 702
Fnu4HI GCNGC 5 cut(s) 167, 170, 641, 843, 895
FokI GGATG 6 cut(s) 40, 344, 470, 556, 668, 675
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 5 cut(s) 167, 170, 641, 843, 895
FspBI CTAG 2 cut(s) 261, 390
GluI GCNGC 5 cut(s) 167, 170, 641, 843, 895
HaeIII GGCC 5 cut(s) 272, 350, 616, 793, 894
HapII CCGG 3 cut(s) 493, 631, 680
HgaI GACGC 1 cut(s) 488
Hin1I GRCGYC 1 cut(s) 499
Hin1II CATG 5 cut(s) 289, 388, 457, 613, 706
HindIII AAGCTT 1 cut(s) 751
HinfI GANTC 5 cut(s) 4, 365, 449, 650, 695
HpaII CCGG 3 cut(s) 493, 631, 680
HphI GGTGA 6 cut(s) 93, 140, 368, 446, 479, 844
Hpy166II GTNNAC 1 cut(s) 152
Hpy188III TCNNGA 3 cut(s) 192, 493, 703
Hpy8I GTNNAC 1 cut(s) 152
HpyAV CCTTC 2 cut(s) 275, 499
HpyCH4III ACNGT 4 cut(s) 128, 156, 396, 563
HpyCH4V TGCA 6 cut(s) 113, 235, 446, 643, 826, 842
HpyF10VI GCNNNNNNNGC 2 cut(s) 632, 750
HpyF3I CTNAG 3 cut(s) 417, 583, 778
Hsp92I GRCGYC 1 cut(s) 499
Hsp92II CATG 5 cut(s) 289, 388, 457, 613, 706
Kpn2I TCCGGA 1 cut(s) 492
Kzo9I GATC 2 cut(s) 46, 179
LmnI GCTCC 2 cut(s) 202, 807
Lsp1109I GCAGC 3 cut(s) 153, 627, 854
LweI GCATC 2 cut(s) 791, 854
MaeI CTAG 2 cut(s) 261, 390
MaeIII GTNAC 2 cut(s) 211, 529
MalI GATC 2 cut(s) 48, 181
MboI GATC 2 cut(s) 46, 179
MboII GAAGA 5 cut(s) 41, 79, 105, 332, 776
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 199
MlsI TGGCCA 1 cut(s) 793
MluCI AATT 1 cut(s) 78
MluNI TGGCCA 1 cut(s) 793
MlyI GAGTC 3 cut(s) 443, 659, 704
MmeI TCCRAC 2 cut(s) 245, 633
Mox20I TGGCCA 1 cut(s) 793
MroI TCCGGA 1 cut(s) 492
MscI TGGCCA 1 cut(s) 793
MseI TTAA 3 cut(s) 21, 755, 916
MslI CAYNNNNRTG 1 cut(s) 290
Msp20I TGGCCA 1 cut(s) 793
MspA1I CMGCKG 1 cut(s) 897
MspI CCGG 3 cut(s) 493, 631, 680
MspR9I CCNGG 3 cut(s) 90, 632, 680
MvaI CCWGG 1 cut(s) 90
MwoI GCNNNNNNNGC 2 cut(s) 632, 750
NciI CCSGG 2 cut(s) 632, 680
NcoI CCATGG 1 cut(s) 453
NdeII GATC 2 cut(s) 46, 179
NlaIII CATG 5 cut(s) 289, 388, 457, 613, 706
NmuCI GTSAC 1 cut(s) 529
PaeR7I CTCGAG 1 cut(s) 274
PagI TCATGA 1 cut(s) 702
PceI AGGCCT 1 cut(s) 350
PfeI GAWTC 2 cut(s) 4, 365
PflMI CCANNNNNTGG 1 cut(s) 890
PkrI GCNGC 5 cut(s) 168, 171, 642, 844, 896
PleI GAGTC 3 cut(s) 443, 658, 703
PpsI GAGTC 3 cut(s) 443, 658, 703
Psp124BI GAGCTC 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 88
PspPI GGNCC 2 cut(s) 270, 490
PspXI VCTCGAGB 1 cut(s) 274
PsuI RGATCY 1 cut(s) 46
RseI CAYNNNNRTG 1 cut(s) 290
Rsr2I CGGWCCG 1 cut(s) 490
RsrII CGGWCCG 1 cut(s) 490
SacI GAGCTC 1 cut(s) 199
SaqAI TTAA 3 cut(s) 21, 755, 916
SatI GCNGC 5 cut(s) 167, 170, 641, 843, 895
Sau3AI GATC 2 cut(s) 46, 179
Sau96I GGNCC 2 cut(s) 270, 490
SchI GAGTC 3 cut(s) 443, 659, 704
ScrFI CCNGG 3 cut(s) 90, 632, 680
SduI GDGCHC 1 cut(s) 199
SfaNI GCATC 2 cut(s) 791, 854
SfcI CTRYAG 2 cut(s) 183, 216
Sfr274I CTCGAG 1 cut(s) 274
SinI GGWCC 1 cut(s) 490
SlaI CTCGAG 1 cut(s) 274
SmiMI CAYNNNNRTG 1 cut(s) 290
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
Sse9I AATT 1 cut(s) 78
SseBI AGGCCT 1 cut(s) 350
SsiI CCGC 2 cut(s) 170, 895
SspMI CTAG 2 cut(s) 261, 390
SstI GAGCTC 1 cut(s) 199
StuI AGGCCT 1 cut(s) 350
StyD4I CCNGG 3 cut(s) 88, 630, 678
StyI CCWWGG 1 cut(s) 453
TaaI ACNGT 4 cut(s) 128, 156, 396, 563
TaqI TCGA 1 cut(s) 275
TaqII GACCGA 1 cut(s) 478
TasI AATT 1 cut(s) 78
TauI GCSGC 2 cut(s) 172, 897
TfiI GAWTC 2 cut(s) 4, 365
Tru1I TTAA 3 cut(s) 21, 755, 916
Tru9I TTAA 3 cut(s) 21, 755, 916
TscAI CASTG 3 cut(s) 568, 642, 715
TseFI GTSAC 1 cut(s) 529
TseI GCWGC 3 cut(s) 166, 640, 842
Tsp45I GTSAC 1 cut(s) 529
TspDTI ATGAA 3 cut(s) 17, 44, 729
TspGWI ACGGA 1 cut(s) 59
TspRI CASTG 3 cut(s) 568, 642, 715
Van91I CCANNNNNTGG 1 cut(s) 890
VpaK11BI GGWCC 1 cut(s) 490
XapI RAATTY 1 cut(s) 78
XcmI CCANNNNNNNNNTGG 2 cut(s) 715, 801
XhoI CTCGAG 1 cut(s) 274
XspI CTAG 2 cut(s) 261, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.