Rmu_sc0005310.1_g000015

Peptidoglycan-binding LysM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005310.1
OG0013680
Physical Location & Seq
Forward (+)
77287 .. 78650
1364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005310.1_g000015.1.cds

Sequence Viewer

Length: 882 bp
atgtttgctttgaagaccttgaaaatacctttaccaggaagacattcaccatctactgcttctctttctccacaagaaaacaacactgaaaagtcatcctcaggtcttggccagcctaatttgctaccaccattccgatctgtaggttcaagagctcccaaggataaggtcactacagcaatgagcactttacagaaatactatggtctaaaacctccaaatcggaggggctcaactgaaggcatggagatggccgtttacagaagtagaagttcagaagactttgatgatgggttgttgtcaaaggcctcaccattttctgattctcaaagtcaccataacatgactagacgtttttctgttggtcaattgactgagaatggtgcaatggctgattatatgcactttgcagactccatggatggggagggtgagaaatctgatgataagtcagtccgaaggcgtcagaaaactgaagttgaaaatgggaatgtcacaccagagaggatgttaaaaggggaaaaaagtggtgggagcagtggtttctcagcctcaacaggaaagggtttagccatgaggccgaaatcagcaagccgaacagtgctgcaatctgagtcagattcaggatggttgaactctatcccagtgggactgggagagtctatcgtgaccactgatgaagtgactgttgttcgcaaatcatcaagcacaccaagtttaaaagaggaggaaaataacagcacagcatcagtttggccaacgtcaaggtggagcttgaaaacagacttgcaagctctttcaaatgcagcatctattaccagaccaatctttgatggcttgccgaaaccaataactggccgctggaaaactgcccttgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

293

Amino Acids

31.77

Weight (kDa)

9.42

Isoelectric Point (pI)

62.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013680)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18360 FvH4_5g18360
malus_domestica MD06G1239300.v1.1 MD14G1245200.v1.1
prunus_persica Prupe.5G243200_v2.0.a1
pyrus_communis pycom06g21490 pycom14g20620
rosa_chinensis RchiOBHm_Chr7g0177231
rosa_laevigata RLG00000005554
rosa_multiflora Rmu_sc0005310.1_g000015 Rmu_sc0024964.1_g000001
rosa_roxburghii Rroxscaffold_3G00276030
rosa_rugosa Rorug06G0404000
rosa_samantha Rh7AG004000 Rh7BG003800 Rh7CG003700 Rh7DG003700
rosa_wichuraiana Rw7G000320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 854
AciI CCGC 1 cut(s) 859
AcoI YGGCCR 4 cut(s) 109, 252, 755, 856
AcuI CTGAAG 2 cut(s) 258, 495
AcyI GRCGYC 1 cut(s) 463
AfiI CCNNNNNNNGG 3 cut(s) 35, 423, 854
AgsI TTSAA 7 cut(s) 13, 22, 150, 482, 634, 778, 801
AjnI CCWGG 1 cut(s) 34
AluBI AGCT 3 cut(s) 155, 774, 794
AluI AGCT 3 cut(s) 155, 774, 794
Alw21I GWGCWC 2 cut(s) 157, 188
AoxI GGCC 6 cut(s) 109, 252, 306, 578, 755, 856
ApeKI GCWGC 2 cut(s) 604, 806
Asp700I GAANNNNTTC 1 cut(s) 43
AsuHPI GGTGA 4 cut(s) 39, 303, 326, 443
AxyI CCTNAGG 1 cut(s) 100
BalI TGGCCA 2 cut(s) 111, 757
BanII GRGCYC 2 cut(s) 157, 233
BbsI GAAGAC 3 cut(s) 20, 46, 285
Bbv12I GWGCWC 2 cut(s) 157, 188
BbvI GCAGC 2 cut(s) 591, 818
BccI CCATC 6 cut(s) 58, 244, 284, 416, 621, 827
BceAI ACGGC 1 cut(s) 239
BciT130I CCWGG 1 cut(s) 36
BfaI CTAG 1 cut(s) 348
BfmI CTRYAG 2 cut(s) 141, 174
BisI GCNGC 3 cut(s) 605, 807, 859
BlsI GCNGC 3 cut(s) 606, 808, 860
Bme1390I CCNGG 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 36
BmrI ACTGGG 2 cut(s) 638, 662
BmsI GCATC 2 cut(s) 755, 818
BmuI ACTGGG 2 cut(s) 638, 662
BpiI GAAGAC 3 cut(s) 20, 46, 285
BsaHI GRCGYC 1 cut(s) 463
BsaJI CCNNGG 2 cut(s) 159, 417
BsaXI ACNNNNNCTCC 2 cut(s) 526, 556
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 423, 854
Bse1I ACTGG 3 cut(s) 644, 657, 859
Bse21I CCTNAGG 1 cut(s) 100
Bse3DI GCAATG 2 cut(s) 186, 393
BseBI CCWGG 1 cut(s) 36
BseDI CCNNGG 2 cut(s) 159, 417
BseGI GGATG 4 cut(s) 95, 427, 513, 632
BseLI CCNNNNNNNGG 3 cut(s) 35, 423, 854
BseMI GCAATG 2 cut(s) 186, 393
BseMII CTCAG 4 cut(s) 114, 366, 561, 603
BseNI ACTGG 3 cut(s) 644, 657, 859
BseRI GAGGAG 1 cut(s) 740
BseXI GCAGC 2 cut(s) 591, 818
BshFI GGCC 6 cut(s) 111, 254, 308, 580, 757, 858
BsiHKAI GWGCWC 2 cut(s) 157, 188
BslFI GGGAC 1 cut(s) 663
BslI CCNNNNNNNGG 3 cut(s) 35, 423, 854
BsmFI GGGAC 1 cut(s) 663
BsnI GGCC 6 cut(s) 111, 254, 308, 580, 757, 858
Bsp1286I GDGCHC 3 cut(s) 157, 188, 233
Bsp143I GATC 1 cut(s) 137
Bsp19I CCATGG 1 cut(s) 417
BspACI CCGC 1 cut(s) 859
BspANI GGCC 6 cut(s) 111, 254, 308, 580, 757, 858
BspCNI CTCAG 4 cut(s) 113, 367, 560, 604
BsrDI GCAATG 2 cut(s) 186, 393
BsrI ACTGG 3 cut(s) 644, 657, 859
BssECI CCNNGG 2 cut(s) 159, 417
BssMI GATC 1 cut(s) 137
BssNI GRCGYC 1 cut(s) 463
BssT1I CCWWGG 2 cut(s) 159, 417
Bst2UI CCWGG 1 cut(s) 36
Bst4CI ACNGT 2 cut(s) 601, 688
BstACI GRCGYC 1 cut(s) 463
BstC8I GCNNGC 4 cut(s) 113, 592, 792, 839
BstDEI CTNAG 4 cut(s) 100, 375, 547, 612
BstDSI CCRYGG 1 cut(s) 417
BstENI CCTNNNNNAGG 1 cut(s) 33
BstF5I GGATG 4 cut(s) 95, 427, 513, 632
BstKTI GATC 1 cut(s) 140
BstMBI GATC 1 cut(s) 137
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstNI CCWGG 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 34
BstSFI CTRYAG 2 cut(s) 141, 174
BstV1I GCAGC 2 cut(s) 591, 818
BstV2I GAAGAC 3 cut(s) 20, 46, 285
Bsu36I CCTNAGG 1 cut(s) 100
BsuRI GGCC 6 cut(s) 111, 254, 308, 580, 757, 858
BtgI CCRYGG 1 cut(s) 417
BtsCI GGATG 4 cut(s) 95, 427, 513, 632
BtsI GCAGTG 1 cut(s) 544
BtsIMutI CAGTG 5 cut(s) 84, 544, 606, 651, 672
Cac8I GCNNGC 4 cut(s) 113, 592, 792, 839
CseI GACGC 1 cut(s) 452
CviAII CATG 4 cut(s) 244, 343, 418, 574
DdeI CTNAG 4 cut(s) 100, 375, 547, 612
DpnI GATC 1 cut(s) 139
DpnII GATC 1 cut(s) 137
DraI TTTAAA 1 cut(s) 720
EaeI YGGCCR 4 cut(s) 109, 252, 755, 856
Ecl136II GAGCTC 1 cut(s) 155
Eco130I CCWWGG 2 cut(s) 159, 417
Eco147I AGGCCT 1 cut(s) 308
Eco24I GRGCYC 2 cut(s) 157, 233
Eco53kI GAGCTC 1 cut(s) 155
Eco57I CTGAAG 2 cut(s) 258, 495
Eco81I CCTNAGG 1 cut(s) 100
EcoICRI GAGCTC 1 cut(s) 155
EcoNI CCTNNNNNAGG 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 34
EcoT14I CCWWGG 2 cut(s) 159, 417
EcoT38I GRGCYC 2 cut(s) 157, 233
ErhI CCWWGG 2 cut(s) 159, 417
FaeI CATG 4 cut(s) 247, 346, 421, 577
FaiI YATR 8 cut(s) 204, 245, 339, 344, 399, 401, 419, 575
FaqI GGGAC 1 cut(s) 663
FatI CATG 4 cut(s) 243, 342, 417, 573
Fnu4HI GCNGC 3 cut(s) 605, 807, 859
FokI GGATG 4 cut(s) 82, 434, 520, 639
FriOI GRGCYC 2 cut(s) 157, 233
Fsp4HI GCNGC 3 cut(s) 605, 807, 859
FspBI CTAG 1 cut(s) 348
GluI GCNGC 3 cut(s) 605, 807, 859
HaeIII GGCC 6 cut(s) 111, 254, 308, 580, 757, 858
HgaI GACGC 1 cut(s) 452
Hin1I GRCGYC 1 cut(s) 463
Hin1II CATG 4 cut(s) 247, 346, 421, 577
HinfI GANTC 5 cut(s) 323, 413, 614, 620, 659
HphI GGTGA 4 cut(s) 39, 303, 326, 443
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 9 cut(s) 137, 225, 277, 322, 442, 458, 468, 613, 619
Hpy188III TCNNGA 3 cut(s) 150, 624, 667
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 2 cut(s) 233, 453
HpyCH4III ACNGT 2 cut(s) 601, 688
HpyCH4IV ACGT 2 cut(s) 352, 761
HpyCH4V TGCA 6 cut(s) 386, 403, 410, 607, 790, 806
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 4 cut(s) 100, 375, 547, 612
HpySE526I ACGT 2 cut(s) 352, 761
Hsp92I GRCGYC 1 cut(s) 463
Hsp92II CATG 4 cut(s) 247, 346, 421, 577
Kzo9I GATC 1 cut(s) 137
LmnI GCTCC 3 cut(s) 160, 534, 771
Lsp1109I GCAGC 2 cut(s) 591, 818
LweI GCATC 2 cut(s) 755, 818
MaeI CTAG 1 cut(s) 348
MaeII ACGT 2 cut(s) 352, 761
MaeIII GTNAC 5 cut(s) 169, 332, 493, 667, 682
MalI GATC 1 cut(s) 139
MboI GATC 1 cut(s) 137
MboII GAAGA 3 cut(s) 25, 51, 290
MfeI CAATTG 1 cut(s) 368
MhlI GDGCHC 3 cut(s) 157, 188, 233
MlsI TGGCCA 2 cut(s) 111, 757
MluCI AATT 2 cut(s) 118, 368
MluNI TGGCCA 2 cut(s) 111, 757
MlyI GAGTC 3 cut(s) 407, 623, 668
Mox20I TGGCCA 2 cut(s) 111, 757
MroXI GAANNNNTTC 1 cut(s) 43
MscI TGGCCA 2 cut(s) 111, 757
MseI TTAA 2 cut(s) 512, 719
MslI CAYNNNNRTG 1 cut(s) 248
Msp20I TGGCCA 2 cut(s) 111, 757
MspA1I CMGCKG 1 cut(s) 861
MspR9I CCNGG 1 cut(s) 36
MunI CAATTG 1 cut(s) 368
MvaI CCWGG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 121
NcoI CCATGG 1 cut(s) 417
NdeII GATC 1 cut(s) 137
NlaIII CATG 4 cut(s) 247, 346, 421, 577
NmuCI GTSAC 5 cut(s) 169, 332, 493, 667, 682
PceI AGGCCT 1 cut(s) 308
PdmI GAANNNNTTC 1 cut(s) 43
PfeI GAWTC 2 cut(s) 323, 620
PflMI CCANNNNNTGG 1 cut(s) 854
PkrI GCNGC 3 cut(s) 606, 808, 860
PleI GAGTC 3 cut(s) 407, 622, 667
PpsI GAGTC 3 cut(s) 407, 622, 667
Psp124BI GAGCTC 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 34
PspGI CCWGG 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 248
SacI GAGCTC 1 cut(s) 157
SaqAI TTAA 2 cut(s) 512, 719
SatI GCNGC 3 cut(s) 605, 807, 859
Sau3AI GATC 1 cut(s) 137
SchI GAGTC 3 cut(s) 407, 623, 668
ScrFI CCNGG 1 cut(s) 36
SduI GDGCHC 3 cut(s) 157, 188, 233
SfaNI GCATC 2 cut(s) 755, 818
SfcI CTRYAG 2 cut(s) 141, 174
SmiMI CAYNNNNRTG 1 cut(s) 248
Sse9I AATT 2 cut(s) 118, 368
SseBI AGGCCT 1 cut(s) 308
SsiI CCGC 1 cut(s) 859
SspMI CTAG 1 cut(s) 348
SstI GAGCTC 1 cut(s) 157
StuI AGGCCT 1 cut(s) 308
StyD4I CCNGG 1 cut(s) 34
StyI CCWWGG 2 cut(s) 159, 417
TaaI ACNGT 2 cut(s) 601, 688
TaiI ACGT 2 cut(s) 355, 764
TasI AATT 2 cut(s) 118, 368
TauI GCSGC 1 cut(s) 861
TfiI GAWTC 2 cut(s) 323, 620
Tru1I TTAA 2 cut(s) 512, 719
Tru9I TTAA 2 cut(s) 512, 719
TscAI CASTG 5 cut(s) 91, 544, 606, 651, 679
TseFI GTSAC 5 cut(s) 169, 332, 493, 667, 682
TseI GCWGC 2 cut(s) 604, 806
Tsp45I GTSAC 5 cut(s) 169, 332, 493, 667, 682
TspDTI ATGAA 1 cut(s) 693
TspRI CASTG 5 cut(s) 91, 544, 606, 651, 679
Van91I CCANNNNNTGG 1 cut(s) 854
XagI CCTNNNNNAGG 1 cut(s) 33
XcmI CCANNNNNNNNNTGG 1 cut(s) 765
XmnI GAANNNNTTC 1 cut(s) 43
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.