Rw7G000320

Peptidoglycan-binding LysM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0013680
Physical Location & Seq
Reverse (-)
279703 .. 281370
1668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G000320.1

Sequence Viewer

Length: 1011 bp
ATGTCGCCTTCAAATACAGGGTCGGTGGGCAACGGAGGAGGAGGAGCAGGAGGAAAGAATTACATAGAGCACCAAGTCTCCAAGATGGACACTCTCGCCGGCGTTGCTATCAAATACGGCGTTGAGGTCGCTGACATTAAAAGGATGAATGGCTTTGCTACAGATCTTCAAATGTTTGCTTTGAAGACCTTGAAAATACCTTTACCAGGAGACATTCACCATCTACTGCTTCTCTTTCTCCACACTAATTTGCTACCACCATTCCGATCTGTAGGTTCAAGAGCTCCCAAGGATAAGGTCACTACAGCAATGAGCACTTTACAGAAATACTATGGTCTAAAACCTCCAAATCGGAGGGGCTCAACTGAAGGCATGGAGATGGCTGTTTACAGAAGTAGAAGTTCAGAAGACTTCGATGATGGGTTGTTGTCAAAGGCCTCACCATTTTCTGATTCTCAAAGTCACCATAACATGACTAGACGTTTTTCTGTTGGTCAATTGACTGAGAATGGTGCAATGGCTGATTATATGCACTTCGCAGACTCCATGGATGGGGAGGGTGAGAAATCTGATGATAAGTCAGTCCGAAGGCGTCAGAAAACTGAAGTTGAAAATGGGAATGTCACACCAGAGAGGATGTTAAAAGGGGAAAAAAGTGGTGGGAGCAGTGGTTTCTCAGCCTCAACAGGAAAGGGTTTAGCCATGAGGCCGAAATCAGCAAGCCGAGCAGTGCTGCAATCTGAGTCAGATTCAGGATGGTTGAACTCTATCCCAGTGGGACTGGGAGAGTCTATCGTGACCACTGATGAAGTGACTGTTGTTCGCAAATCATCAAGCACACCAAGTTTAAAAGAGGAGGAAAATAACAGCACAGCATCAGTTTGGCCAACGTCAAGGTGGAGCTTGAAAACAGACTTGCAAGCTCTTTCAAATGCAGCATCTATTACCAGACCAATCTTTGATGGCTTGCCGAAACCAATAACTGGCCGCTGGAAAACTGCCCTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

336

Amino Acids

36.29

Weight (kDa)

9.2

Isoelectric Point (pI)

53.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013680)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18360 FvH4_5g18360
malus_domestica MD06G1239300.v1.1 MD14G1245200.v1.1
prunus_persica Prupe.5G243200_v2.0.a1
pyrus_communis pycom06g21490 pycom14g20620
rosa_chinensis RchiOBHm_Chr7g0177231
rosa_laevigata RLG00000005554
rosa_multiflora Rmu_sc0005310.1_g000015 Rmu_sc0024964.1_g000001
rosa_roxburghii Rroxscaffold_3G00276030
rosa_rugosa Rorug06G0404000
rosa_samantha Rh7AG004000 Rh7BG003800 Rh7CG003700 Rh7DG003700
rosa_wichuraiana Rw7G000320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 983
AciI CCGC 1 cut(s) 988
AcoI YGGCCR 2 cut(s) 884, 985
AcuI CTGAAG 2 cut(s) 387, 624
AcyI GRCGYC 1 cut(s) 592
AfiI CCNNNNNNNGG 3 cut(s) 206, 552, 983
AgsI TTSAA 9 cut(s) 12, 170, 184, 193, 279, 611, 763, 907, 930
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 3 cut(s) 284, 903, 923
AluI AGCT 3 cut(s) 284, 903, 923
Alw21I GWGCWC 3 cut(s) 72, 286, 317
Alw26I GTCTC 2 cut(s) 82, 204
AoxI GGCC 4 cut(s) 435, 707, 884, 985
ApeKI GCWGC 2 cut(s) 733, 935
ArsI GACNNNNNNTTYG 1 cut(s) 37
AsuHPI GGTGA 4 cut(s) 209, 432, 455, 572
BalI TGGCCA 1 cut(s) 886
BanII GRGCYC 2 cut(s) 286, 362
BbsI GAAGAC 2 cut(s) 191, 414
Bbv12I GWGCWC 3 cut(s) 72, 286, 317
BbvI GCAGC 2 cut(s) 720, 947
BccI CCATC 7 cut(s) 79, 228, 373, 413, 545, 750, 956
BceAI ACGGC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 2 cut(s) 82, 204
BfaI CTAG 1 cut(s) 477
BfmI CTRYAG 3 cut(s) 159, 270, 303
BglII AGATCT 1 cut(s) 163
BisI GCNGC 3 cut(s) 734, 936, 988
BlsI GCNGC 3 cut(s) 735, 937, 989
Bme1390I CCNGG 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 207
BmrI ACTGGG 2 cut(s) 767, 791
BmsI GCATC 2 cut(s) 884, 947
BmuI ACTGGG 2 cut(s) 767, 791
BpiI GAAGAC 2 cut(s) 191, 414
BsaHI GRCGYC 1 cut(s) 592
BsaJI CCNNGG 2 cut(s) 288, 546
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 655, 685
Bsc4I CCNNNNNNNGG 3 cut(s) 206, 552, 983
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 3 cut(s) 773, 786, 988
Bse3DI GCAATG 2 cut(s) 315, 522
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 2 cut(s) 288, 546
BseGI GGATG 4 cut(s) 150, 556, 642, 761
BseLI CCNNNNNNNGG 3 cut(s) 206, 552, 983
BseMI GCAATG 2 cut(s) 315, 522
BseMII CTCAG 3 cut(s) 495, 690, 732
BseNI ACTGG 3 cut(s) 773, 786, 988
BseRI GAGGAG 4 cut(s) 51, 54, 57, 869
BseXI GCAGC 2 cut(s) 720, 947
BshFI GGCC 4 cut(s) 437, 709, 886, 987
BsiHKAI GWGCWC 3 cut(s) 72, 286, 317
BsiSI CCGG 1 cut(s) 99
BslFI GGGAC 1 cut(s) 792
BslI CCNNNNNNNGG 3 cut(s) 206, 552, 983
BsmAI GTCTC 2 cut(s) 82, 204
BsmFI GGGAC 1 cut(s) 792
BsnI GGCC 4 cut(s) 437, 709, 886, 987
Bsp1286I GDGCHC 4 cut(s) 72, 286, 317, 362
Bsp143I GATC 2 cut(s) 163, 266
Bsp19I CCATGG 1 cut(s) 546
BspACI CCGC 1 cut(s) 988
BspANI GGCC 4 cut(s) 437, 709, 886, 987
BspCNI CTCAG 3 cut(s) 496, 689, 733
BsrDI GCAATG 2 cut(s) 315, 522
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 3 cut(s) 773, 786, 988
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 288, 546
BssMI GATC 2 cut(s) 163, 266
BssNI GRCGYC 1 cut(s) 592
BssT1I CCWWGG 2 cut(s) 288, 546
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 817
BstACI GRCGYC 1 cut(s) 592
BstC8I GCNNGC 4 cut(s) 100, 721, 921, 968
BstDEI CTNAG 3 cut(s) 504, 676, 741
BstDSI CCRYGG 1 cut(s) 546
BstENI CCTNNNNNAGG 1 cut(s) 204
BstF5I GGATG 4 cut(s) 150, 556, 642, 761
BstKTI GATC 2 cut(s) 166, 269
BstMAI GTCTC 2 cut(s) 82, 204
BstMBI GATC 2 cut(s) 163, 266
BstMWI GCNNNNNNNGC 2 cut(s) 104, 725
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 3 cut(s) 159, 270, 303
BstV1I GCAGC 2 cut(s) 720, 947
BstV2I GAAGAC 2 cut(s) 191, 414
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BsuRI GGCC 4 cut(s) 437, 709, 886, 987
BtgI CCRYGG 1 cut(s) 546
BtsCI GGATG 4 cut(s) 150, 556, 642, 761
BtsI GCAGTG 2 cut(s) 673, 735
BtsIMutI CAGTG 4 cut(s) 673, 735, 780, 801
Cac8I GCNNGC 4 cut(s) 100, 721, 921, 968
Cfr10I RCCGGY 1 cut(s) 98
CseI GACGC 1 cut(s) 581
CviAII CATG 4 cut(s) 373, 472, 547, 703
DdeI CTNAG 3 cut(s) 504, 676, 741
DpnI GATC 2 cut(s) 165, 268
DpnII GATC 2 cut(s) 163, 266
DraI TTTAAA 1 cut(s) 849
EaeI YGGCCR 2 cut(s) 884, 985
Ecl136II GAGCTC 1 cut(s) 284
Eco130I CCWWGG 2 cut(s) 288, 546
Eco147I AGGCCT 1 cut(s) 437
Eco24I GRGCYC 2 cut(s) 286, 362
Eco53kI GAGCTC 1 cut(s) 284
Eco57I CTGAAG 2 cut(s) 387, 624
EcoICRI GAGCTC 1 cut(s) 284
EcoNI CCTNNNNNAGG 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 205
EcoT14I CCWWGG 2 cut(s) 288, 546
EcoT38I GRGCYC 2 cut(s) 286, 362
ErhI CCWWGG 2 cut(s) 288, 546
FaeI CATG 4 cut(s) 376, 475, 550, 706
FaiI YATR 9 cut(s) 65, 333, 374, 468, 473, 528, 530, 548, 704
FaqI GGGAC 1 cut(s) 792
FatI CATG 4 cut(s) 372, 471, 546, 702
Fnu4HI GCNGC 3 cut(s) 734, 936, 988
FokI GGATG 4 cut(s) 157, 563, 649, 768
FriOI GRGCYC 2 cut(s) 286, 362
Fsp4HI GCNGC 3 cut(s) 734, 936, 988
FspBI CTAG 1 cut(s) 477
GluI GCNGC 3 cut(s) 734, 936, 988
HaeIII GGCC 4 cut(s) 437, 709, 886, 987
HapII CCGG 1 cut(s) 99
HgaI GACGC 1 cut(s) 581
Hin1I GRCGYC 1 cut(s) 592
Hin1II CATG 4 cut(s) 376, 475, 550, 706
HinfI GANTC 5 cut(s) 452, 542, 743, 749, 788
HpaII CCGG 1 cut(s) 99
HphI GGTGA 4 cut(s) 209, 432, 455, 572
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 9 cut(s) 266, 354, 406, 451, 571, 587, 597, 742, 748
Hpy188III TCNNGA 3 cut(s) 279, 753, 796
Hpy8I GTNNAC 1 cut(s) 388
HpyAV CCTTC 3 cut(s) 18, 362, 582
HpyCH4III ACNGT 1 cut(s) 817
HpyCH4IV ACGT 2 cut(s) 481, 890
HpyCH4V TGCA 5 cut(s) 515, 532, 736, 919, 935
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 725
HpyF3I CTNAG 3 cut(s) 504, 676, 741
HpySE526I ACGT 2 cut(s) 481, 890
Hsp92I GRCGYC 1 cut(s) 592
Hsp92II CATG 4 cut(s) 376, 475, 550, 706
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
Kzo9I GATC 2 cut(s) 163, 266
LmnI GCTCC 4 cut(s) 44, 289, 663, 900
Lsp1109I GCAGC 2 cut(s) 720, 947
LweI GCATC 2 cut(s) 884, 947
MaeI CTAG 1 cut(s) 477
MaeII ACGT 2 cut(s) 481, 890
MaeIII GTNAC 5 cut(s) 298, 461, 622, 796, 811
MalI GATC 2 cut(s) 165, 268
MboI GATC 2 cut(s) 163, 266
MboII GAAGA 3 cut(s) 158, 196, 419
MfeI CAATTG 1 cut(s) 497
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 4 cut(s) 72, 286, 317, 362
MlsI TGGCCA 1 cut(s) 886
MluCI AATT 3 cut(s) 58, 247, 497
MluNI TGGCCA 1 cut(s) 886
MlyI GAGTC 3 cut(s) 536, 752, 797
Mox20I TGGCCA 1 cut(s) 886
MreI CGCCGGCG 1 cut(s) 98
MroNI GCCGGC 1 cut(s) 98
MscI TGGCCA 1 cut(s) 886
MseI TTAA 3 cut(s) 138, 641, 848
MslI CAYNNNNRTG 1 cut(s) 377
Msp20I TGGCCA 1 cut(s) 886
MspA1I CMGCKG 1 cut(s) 990
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 207
MunI CAATTG 1 cut(s) 497
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 104, 725
NaeI GCCGGC 1 cut(s) 100
NcoI CCATGG 1 cut(s) 546
NdeII GATC 2 cut(s) 163, 266
NgoMIV GCCGGC 1 cut(s) 98
NlaIII CATG 4 cut(s) 376, 475, 550, 706
NmeAIII GCCGAG 1 cut(s) 749
NmuCI GTSAC 5 cut(s) 298, 461, 622, 796, 811
PceI AGGCCT 1 cut(s) 437
PdiI GCCGGC 1 cut(s) 100
PfeI GAWTC 2 cut(s) 452, 749
PflMI CCANNNNNTGG 1 cut(s) 983
PkrI GCNGC 3 cut(s) 735, 937, 989
PleI GAGTC 3 cut(s) 536, 751, 796
PpsI GAGTC 3 cut(s) 536, 751, 796
Psp124BI GAGCTC 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PsuI RGATCY 1 cut(s) 163
RseI CAYNNNNRTG 1 cut(s) 377
SacI GAGCTC 1 cut(s) 286
SaqAI TTAA 3 cut(s) 138, 641, 848
SatI GCNGC 3 cut(s) 734, 936, 988
Sau3AI GATC 2 cut(s) 163, 266
SchI GAGTC 3 cut(s) 536, 752, 797
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 4 cut(s) 72, 286, 317, 362
SfaNI GCATC 2 cut(s) 884, 947
SfcI CTRYAG 3 cut(s) 159, 270, 303
SgrAI CRCCGGYG 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 377
Sse9I AATT 3 cut(s) 58, 247, 497
SseBI AGGCCT 1 cut(s) 437
SsiI CCGC 1 cut(s) 988
SspMI CTAG 1 cut(s) 477
SstI GAGCTC 1 cut(s) 286
StuI AGGCCT 1 cut(s) 437
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 2 cut(s) 288, 546
TaaI ACNGT 1 cut(s) 817
TaiI ACGT 2 cut(s) 484, 893
TaqI TCGA 1 cut(s) 414
TasI AATT 3 cut(s) 58, 247, 497
TauI GCSGC 1 cut(s) 990
TfiI GAWTC 2 cut(s) 452, 749
Tru1I TTAA 3 cut(s) 138, 641, 848
Tru9I TTAA 3 cut(s) 138, 641, 848
TscAI CASTG 4 cut(s) 673, 735, 780, 808
TseFI GTSAC 5 cut(s) 298, 461, 622, 796, 811
TseI GCWGC 2 cut(s) 733, 935
Tsp45I GTSAC 5 cut(s) 298, 461, 622, 796, 811
TspDTI ATGAA 2 cut(s) 161, 822
TspGWI ACGGA 1 cut(s) 48
TspRI CASTG 4 cut(s) 673, 735, 780, 808
Van91I CCANNNNNTGG 1 cut(s) 983
XagI CCTNNNNNAGG 1 cut(s) 204
XcmI CCANNNNNNNNNTGG 1 cut(s) 894
XspI CTAG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.