RLG00000005554

Peptidoglycan-binding LysM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013680
Physical Location & Seq
Forward (+)
68502922 .. 68504637
1716 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005554

Sequence Viewer

Length: 1056 bp
ATGTCGCCTTCAAATACAGGGTCGGTGGTGGCGTCGGTGGGCAACGGAGGAGGAAAGAATTACATAGAGCACCAAGTGTCCAAGATGGACACTCTCGCCGGCGTTGCTATCAAATACGGCGTTGAGGTTGCTGACATTAAAAGGATGAATGGCTTTGCTACAGATCTTCAAATGTTTGCTTTGAAGACCTTGAAAATACCTTTACCGGGAAGACATTCACCATCTACTGCTTCTCTTTCTCCACAAGAAAACAACACTGAAAAATCATCCTCAGGTCTTGGCCAGCCTAATTTGCTACCACCATTCCGATCTGTAGGTTCAAGAGCTCCCAAGGATAAGGTCACTACAGCAATGAGCACTTTACAGAAATACTATGGTCTAAAACCTCCAAATCGGAGGGGCTCAACTGAAGGCATGGAGATGGCTGTTTACAGAAGTAGAAGTTCAGAAGACTTTGATGATGATGGGTTGTTGTCAAAGGCCTCACCATTTTCTGATTCTCAAAGTCACCATAACATGACTAGGCGTTTTTCTGTTGGTCAATTGACTGAGAATGGTGCAATGGCTGATTATATGCACTTTGCAGACTCCATGGATGGGGAGGGTGACAAATCTGATGATAAGTCAGTCCGAAGGCGTCAGAAAACTGAAGTTGAAAATGGGAATGTCACACCAGAGAGGATGTTAAAAGGGGAAAAAAGTGGTGGGAGCAGTGGTTTCTCATCCTCAACAGGAAAGGGTTTAGCAATGAGGCCGAAATCAGCAAGCCGAGCAGTGCTGCAATCTGAGTCAGATTCAGGATGGTTGAACTCTATCCCAGTGGGACTGGGAGAGTCTATCGTGACCACTGATGAAGTGACTGTTGTTCGCAAATCATCAAGCACACCAAGTTTAAAAGAGGAGGAAAATAACAGCACAGCATCAGTTTGGCCAACTTCAAGGTGGAGCTTGAAAACAGACTTGCAAGCTCTTTCAAATGCAGCATCTATTACCAGACCAATCTTTGATGGCTTGCCGAAACCAATAACTGGCCGCTGGAAAACTGCCCTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

352

Amino Acids

37.75

Weight (kDa)

9.18

Isoelectric Point (pI)

58.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013680)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18360 FvH4_5g18360
malus_domestica MD06G1239300.v1.1 MD14G1245200.v1.1
prunus_persica Prupe.5G243200_v2.0.a1
pyrus_communis pycom06g21490 pycom14g20620
rosa_chinensis RchiOBHm_Chr7g0177231
rosa_laevigata RLG00000005554
rosa_multiflora Rmu_sc0005310.1_g000015 Rmu_sc0024964.1_g000001
rosa_roxburghii Rroxscaffold_3G00276030
rosa_rugosa Rorug06G0404000
rosa_samantha Rh7AG004000 Rh7BG003800 Rh7CG003700 Rh7DG003700
rosa_wichuraiana Rw7G000320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1028
AciI CCGC 1 cut(s) 1033
AcoI YGGCCR 3 cut(s) 280, 929, 1030
AcuI CTGAAG 2 cut(s) 429, 669
AcyI GRCGYC 2 cut(s) 32, 637
AdeI CACNNNGTG 1 cut(s) 76
AfiI CCNNNNNNNGG 3 cut(s) 206, 597, 1028
AluBI AGCT 3 cut(s) 326, 948, 968
AluI AGCT 3 cut(s) 326, 948, 968
Alw21I GWGCWC 3 cut(s) 72, 328, 359
AoxI GGCC 5 cut(s) 280, 480, 752, 929, 1030
ApeKI GCWGC 2 cut(s) 778, 980
ArsI GACNNNNNNTTYG 1 cut(s) 37
Asp700I GAANNNNTTC 1 cut(s) 214
AsuC2I CCSGG 1 cut(s) 207
AsuHPI GGTGA 4 cut(s) 210, 477, 500, 617
AxyI CCTNAGG 1 cut(s) 271
BalI TGGCCA 2 cut(s) 282, 931
BanII GRGCYC 2 cut(s) 328, 404
BbsI GAAGAC 3 cut(s) 191, 217, 456
Bbv12I GWGCWC 3 cut(s) 72, 328, 359
BbvI GCAGC 2 cut(s) 765, 992
BccI CCATC 7 cut(s) 79, 229, 415, 458, 590, 795, 1001
BceAI ACGGC 1 cut(s) 133
BcnI CCSGG 1 cut(s) 207
BfaI CTAG 1 cut(s) 522
BfmI CTRYAG 3 cut(s) 159, 312, 345
BglII AGATCT 1 cut(s) 163
BisI GCNGC 3 cut(s) 779, 981, 1033
BlsI GCNGC 3 cut(s) 780, 982, 1034
Bme1390I CCNGG 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 207
BmrI ACTGGG 2 cut(s) 812, 836
BmsI GCATC 2 cut(s) 929, 992
BmuI ACTGGG 2 cut(s) 812, 836
BpiI GAAGAC 3 cut(s) 191, 217, 456
BpuMI CCSGG 1 cut(s) 207
BsaHI GRCGYC 2 cut(s) 32, 637
BsaJI CCNNGG 2 cut(s) 330, 591
BsaXI ACNNNNNCTCC 2 cut(s) 700, 730
Bsc4I CCNNNNNNNGG 3 cut(s) 206, 597, 1028
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 3 cut(s) 818, 831, 1033
Bse21I CCTNAGG 1 cut(s) 271
Bse3DI GCAATG 3 cut(s) 357, 567, 753
BseDI CCNNGG 2 cut(s) 330, 591
BseGI GGATG 6 cut(s) 150, 266, 601, 687, 722, 806
BseLI CCNNNNNNNGG 3 cut(s) 206, 597, 1028
BseMI GCAATG 3 cut(s) 357, 567, 753
BseMII CTCAG 3 cut(s) 285, 540, 777
BseNI ACTGG 3 cut(s) 818, 831, 1033
BseRI GAGGAG 2 cut(s) 63, 914
BseXI GCAGC 2 cut(s) 765, 992
BshFI GGCC 5 cut(s) 282, 482, 754, 931, 1032
BsiHKAI GWGCWC 3 cut(s) 72, 328, 359
BsiSI CCGG 2 cut(s) 99, 206
BslFI GGGAC 1 cut(s) 837
BslI CCNNNNNNNGG 3 cut(s) 206, 597, 1028
BsmFI GGGAC 1 cut(s) 837
BsnI GGCC 5 cut(s) 282, 482, 754, 931, 1032
Bsp1286I GDGCHC 4 cut(s) 72, 328, 359, 404
Bsp143I GATC 2 cut(s) 163, 308
Bsp19I CCATGG 1 cut(s) 591
BspACI CCGC 1 cut(s) 1033
BspANI GGCC 5 cut(s) 282, 482, 754, 931, 1032
BspCNI CTCAG 3 cut(s) 284, 541, 778
BsrDI GCAATG 3 cut(s) 357, 567, 753
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 3 cut(s) 818, 831, 1033
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 330, 591
BssMI GATC 2 cut(s) 163, 308
BssNI GRCGYC 2 cut(s) 32, 637
BssT1I CCWWGG 2 cut(s) 330, 591
Bst4CI ACNGT 1 cut(s) 862
BstACI GRCGYC 2 cut(s) 32, 637
BstC8I GCNNGC 5 cut(s) 100, 284, 766, 966, 1013
BstDEI CTNAG 3 cut(s) 271, 549, 786
BstDSI CCRYGG 1 cut(s) 591
BstF5I GGATG 6 cut(s) 150, 266, 601, 687, 722, 806
BstKTI GATC 2 cut(s) 166, 311
BstMBI GATC 2 cut(s) 163, 308
BstMWI GCNNNNNNNGC 3 cut(s) 104, 292, 770
BstSCI CCNGG 1 cut(s) 205
BstSFI CTRYAG 3 cut(s) 159, 312, 345
BstV1I GCAGC 2 cut(s) 765, 992
BstV2I GAAGAC 3 cut(s) 191, 217, 456
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
Bsu36I CCTNAGG 1 cut(s) 271
BsuRI GGCC 5 cut(s) 282, 482, 754, 931, 1032
BtgI CCRYGG 1 cut(s) 591
BtsCI GGATG 6 cut(s) 150, 266, 601, 687, 722, 806
BtsI GCAGTG 2 cut(s) 718, 780
BtsIMutI CAGTG 5 cut(s) 255, 718, 780, 825, 846
Cac8I GCNNGC 5 cut(s) 100, 284, 766, 966, 1013
Cfr10I RCCGGY 1 cut(s) 98
CseI GACGC 2 cut(s) 21, 626
CviAII CATG 3 cut(s) 415, 517, 592
DdeI CTNAG 3 cut(s) 271, 549, 786
DpnI GATC 2 cut(s) 165, 310
DpnII GATC 2 cut(s) 163, 308
DraI TTTAAA 1 cut(s) 894
DraIII CACNNNGTG 1 cut(s) 76
EaeI YGGCCR 3 cut(s) 280, 929, 1030
Ecl136II GAGCTC 1 cut(s) 326
Eco130I CCWWGG 2 cut(s) 330, 591
Eco147I AGGCCT 1 cut(s) 482
Eco24I GRGCYC 2 cut(s) 328, 404
Eco53kI GAGCTC 1 cut(s) 326
Eco57I CTGAAG 2 cut(s) 429, 669
Eco81I CCTNAGG 1 cut(s) 271
EcoICRI GAGCTC 1 cut(s) 326
EcoT14I CCWWGG 2 cut(s) 330, 591
EcoT38I GRGCYC 2 cut(s) 328, 404
ErhI CCWWGG 2 cut(s) 330, 591
FaeI CATG 3 cut(s) 418, 520, 595
FaiI YATR 8 cut(s) 65, 375, 416, 513, 518, 573, 575, 593
FaqI GGGAC 1 cut(s) 837
FatI CATG 3 cut(s) 414, 516, 591
Fnu4HI GCNGC 3 cut(s) 779, 981, 1033
FokI GGATG 6 cut(s) 157, 253, 608, 694, 709, 813
FriOI GRGCYC 2 cut(s) 328, 404
Fsp4HI GCNGC 3 cut(s) 779, 981, 1033
FspBI CTAG 1 cut(s) 522
GluI GCNGC 3 cut(s) 779, 981, 1033
HaeIII GGCC 5 cut(s) 282, 482, 754, 931, 1032
HapII CCGG 2 cut(s) 99, 206
HgaI GACGC 2 cut(s) 21, 626
Hin1I GRCGYC 2 cut(s) 32, 637
Hin1II CATG 3 cut(s) 418, 520, 595
HinfI GANTC 5 cut(s) 497, 587, 788, 794, 833
HpaII CCGG 2 cut(s) 99, 206
HphI GGTGA 4 cut(s) 210, 477, 500, 617
Hpy166II GTNNAC 1 cut(s) 430
Hpy188I TCNGA 9 cut(s) 308, 396, 448, 496, 616, 632, 642, 787, 793
Hpy188III TCNNGA 3 cut(s) 321, 798, 841
Hpy8I GTNNAC 1 cut(s) 430
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 3 cut(s) 18, 404, 627
HpyCH4III ACNGT 1 cut(s) 862
HpyCH4V TGCA 6 cut(s) 560, 577, 584, 781, 964, 980
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 292, 770
HpyF3I CTNAG 3 cut(s) 271, 549, 786
Hsp92I GRCGYC 2 cut(s) 32, 637
Hsp92II CATG 3 cut(s) 418, 520, 595
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
Kzo9I GATC 2 cut(s) 163, 308
LmnI GCTCC 3 cut(s) 331, 708, 945
Lsp1109I GCAGC 2 cut(s) 765, 992
LweI GCATC 2 cut(s) 929, 992
MaeI CTAG 1 cut(s) 522
MaeIII GTNAC 6 cut(s) 340, 506, 605, 667, 841, 856
MalI GATC 2 cut(s) 165, 310
MboI GATC 2 cut(s) 163, 308
MboII GAAGA 4 cut(s) 158, 196, 222, 461
MfeI CAATTG 1 cut(s) 542
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 4 cut(s) 72, 328, 359, 404
MlsI TGGCCA 2 cut(s) 282, 931
MluCI AATT 3 cut(s) 58, 289, 542
MluNI TGGCCA 2 cut(s) 282, 931
MlyI GAGTC 3 cut(s) 581, 797, 842
Mox20I TGGCCA 2 cut(s) 282, 931
MreI CGCCGGCG 1 cut(s) 98
MroNI GCCGGC 1 cut(s) 98
MroXI GAANNNNTTC 1 cut(s) 214
MscI TGGCCA 2 cut(s) 282, 931
MseI TTAA 3 cut(s) 138, 686, 893
MslI CAYNNNNRTG 1 cut(s) 419
Msp20I TGGCCA 2 cut(s) 282, 931
MspA1I CMGCKG 1 cut(s) 1035
MspI CCGG 2 cut(s) 99, 206
MspR9I CCNGG 1 cut(s) 207
MunI CAATTG 1 cut(s) 542
MwoI GCNNNNNNNGC 3 cut(s) 104, 292, 770
NaeI GCCGGC 1 cut(s) 100
NciI CCSGG 1 cut(s) 207
NcoI CCATGG 1 cut(s) 591
NdeII GATC 2 cut(s) 163, 308
NgoMIV GCCGGC 1 cut(s) 98
NlaIII CATG 3 cut(s) 418, 520, 595
NmeAIII GCCGAG 1 cut(s) 794
NmuCI GTSAC 6 cut(s) 340, 506, 605, 667, 841, 856
PceI AGGCCT 1 cut(s) 482
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PdiI GCCGGC 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 214
PfeI GAWTC 2 cut(s) 497, 794
PflMI CCANNNNNTGG 1 cut(s) 1028
PkrI GCNGC 3 cut(s) 780, 982, 1034
PleI GAGTC 3 cut(s) 581, 796, 841
PpsI GAGTC 3 cut(s) 581, 796, 841
Psp124BI GAGCTC 1 cut(s) 328
PsuI RGATCY 1 cut(s) 163
RseI CAYNNNNRTG 1 cut(s) 419
SacI GAGCTC 1 cut(s) 328
SaqAI TTAA 3 cut(s) 138, 686, 893
SatI GCNGC 3 cut(s) 779, 981, 1033
Sau3AI GATC 2 cut(s) 163, 308
SchI GAGTC 3 cut(s) 581, 797, 842
ScrFI CCNGG 1 cut(s) 207
SduI GDGCHC 4 cut(s) 72, 328, 359, 404
SfaNI GCATC 2 cut(s) 929, 992
SfcI CTRYAG 3 cut(s) 159, 312, 345
SgrAI CRCCGGYG 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 419
Sse9I AATT 3 cut(s) 58, 289, 542
SseBI AGGCCT 1 cut(s) 482
SsiI CCGC 1 cut(s) 1033
SspMI CTAG 1 cut(s) 522
SstI GAGCTC 1 cut(s) 328
StuI AGGCCT 1 cut(s) 482
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 2 cut(s) 330, 591
TaaI ACNGT 1 cut(s) 862
TasI AATT 3 cut(s) 58, 289, 542
TauI GCSGC 1 cut(s) 1035
TfiI GAWTC 2 cut(s) 497, 794
Tru1I TTAA 3 cut(s) 138, 686, 893
Tru9I TTAA 3 cut(s) 138, 686, 893
TscAI CASTG 5 cut(s) 262, 718, 780, 825, 853
TseFI GTSAC 6 cut(s) 340, 506, 605, 667, 841, 856
TseI GCWGC 2 cut(s) 778, 980
Tsp45I GTSAC 6 cut(s) 340, 506, 605, 667, 841, 856
TspDTI ATGAA 2 cut(s) 161, 867
TspGWI ACGGA 1 cut(s) 60
TspRI CASTG 5 cut(s) 262, 718, 780, 825, 853
Van91I CCANNNNNTGG 1 cut(s) 1028
XcmI CCANNNNNNNNNTGG 1 cut(s) 939
XmnI GAANNNNTTC 1 cut(s) 214
XspI CTAG 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.