Rh7CG003700

Peptidoglycan-binding LysM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0013680
Physical Location & Seq
Reverse (-)
341524 .. 345796
4273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG003700.1

Sequence Viewer

Length: 822 bp
ATGTCTTATTGCAGAGAAAACAACACTGAAAAGTCATCCTCAGGTCTTGGCCAGCCTAATTTGCTACCACCATTCCGATCTGTAGGTTCAAGAGCTCCCAAGGATAAGGTCACTACAGCAATGAGCACTTTACAGAAATACTATGGTCTAAAACCTCCAAATCGGAGGGGCTCAACTGAAGGCATGGAGATGGCTGTTTACAGAAGTAGAAGTTCAGAAGACTTTGATGATGGGTTGTTGTCAAGGGCCTCACCATTTTCTGATTCTCAAAGTCACCATAACATGACTAGACGTTTTTCTGTTGGTCAATTGACTGAGAATGGTGCAATGGCTGATTATATGCACTTTGCAGACTCCATGGATGGGGAGGGTGAGAAATCTGATGATAAGTCAGTCCGAAGGCGTCAGAAAACTGAAGTTGAAAATGGGAATGTCACACCAGAGAGGATGTTAAAAGGGGAAAAAAGTGGTGGGAGCAGTGGTTTCTCAGCCTCAACAGGAAAGGGTTTAGCCATGAGGCCGAAATCAGCAAGCCGAGCAGTGCTGCAATCTGAGTCAGATTCAGGATGGTTGAACTCTATCCCAGTGGGACTGGGAGAGTCTATCGTGACCACTGATGAAGTGACTGTTGTTCGCAAATCATCAAGCACACCAAGTTTAAAAGAGGAGGAAAATAACAACACAGCATCAGTTTGGCCAACTTCAAGGTGGAGCTTGAAAACAGACTTGCAAGCTCTTTCAAATGCAGCATCTATTACCAGACCAATCTTTGATGGCTTGCCGAAACCAATAACTGGCCGCTGGAAAACTGCCCTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

273

Amino Acids

29.77

Weight (kDa)

9.09

Isoelectric Point (pI)

62.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013680)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18360 FvH4_5g18360
malus_domestica MD06G1239300.v1.1 MD14G1245200.v1.1
prunus_persica Prupe.5G243200_v2.0.a1
pyrus_communis pycom06g21490 pycom14g20620
rosa_chinensis RchiOBHm_Chr7g0177231
rosa_laevigata RLG00000005554
rosa_multiflora Rmu_sc0005310.1_g000015 Rmu_sc0024964.1_g000001
rosa_roxburghii Rroxscaffold_3G00276030
rosa_rugosa Rorug06G0404000
rosa_samantha Rh7AG004000 Rh7BG003800 Rh7CG003700 Rh7DG003700
rosa_wichuraiana Rw7G000320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 794
AciI CCGC 1 cut(s) 799
AcoI YGGCCR 3 cut(s) 49, 695, 796
AcuI CTGAAG 2 cut(s) 198, 435
AcyI GRCGYC 1 cut(s) 403
AfiI CCNNNNNNNGG 2 cut(s) 363, 794
AgsI TTSAA 6 cut(s) 90, 422, 574, 705, 718, 741
AluBI AGCT 3 cut(s) 95, 714, 734
AluI AGCT 3 cut(s) 95, 714, 734
Alw21I GWGCWC 2 cut(s) 97, 128
AoxI GGCC 5 cut(s) 49, 246, 518, 695, 796
ApeKI GCWGC 2 cut(s) 544, 746
AspS9I GGNCC 1 cut(s) 246
AsuHPI GGTGA 3 cut(s) 243, 266, 383
AxyI CCTNAGG 1 cut(s) 40
BalI TGGCCA 2 cut(s) 51, 697
BanII GRGCYC 2 cut(s) 97, 173
BbsI GAAGAC 1 cut(s) 225
Bbv12I GWGCWC 2 cut(s) 97, 128
BbvI GCAGC 2 cut(s) 531, 758
BccI CCATC 5 cut(s) 184, 224, 356, 561, 767
BfaI CTAG 1 cut(s) 288
BfmI CTRYAG 2 cut(s) 81, 114
BisI GCNGC 3 cut(s) 545, 747, 799
BlsI GCNGC 3 cut(s) 546, 748, 800
BmgT120I GGNCC 1 cut(s) 246
BmrI ACTGGG 2 cut(s) 578, 602
BmsI GCATC 2 cut(s) 695, 758
BmuI ACTGGG 2 cut(s) 578, 602
BpiI GAAGAC 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 403
BsaJI CCNNGG 2 cut(s) 99, 357
BsaXI ACNNNNNCTCC 2 cut(s) 466, 496
Bsc4I CCNNNNNNNGG 2 cut(s) 363, 794
Bse1I ACTGG 3 cut(s) 584, 597, 799
Bse21I CCTNAGG 1 cut(s) 40
Bse3DI GCAATG 2 cut(s) 126, 333
BseDI CCNNGG 2 cut(s) 99, 357
BseGI GGATG 4 cut(s) 35, 367, 453, 572
BseLI CCNNNNNNNGG 2 cut(s) 363, 794
BseMI GCAATG 2 cut(s) 126, 333
BseMII CTCAG 4 cut(s) 54, 306, 501, 543
BseNI ACTGG 3 cut(s) 584, 597, 799
BseRI GAGGAG 1 cut(s) 680
BseXI GCAGC 2 cut(s) 531, 758
BshFI GGCC 5 cut(s) 51, 248, 520, 697, 798
BsiHKAI GWGCWC 2 cut(s) 97, 128
BslFI GGGAC 1 cut(s) 603
BslI CCNNNNNNNGG 2 cut(s) 363, 794
BsmFI GGGAC 1 cut(s) 603
BsnI GGCC 5 cut(s) 51, 248, 520, 697, 798
Bsp1286I GDGCHC 3 cut(s) 97, 128, 173
Bsp143I GATC 1 cut(s) 77
Bsp19I CCATGG 1 cut(s) 357
BspACI CCGC 1 cut(s) 799
BspANI GGCC 5 cut(s) 51, 248, 520, 697, 798
BspCNI CTCAG 4 cut(s) 53, 307, 500, 544
BsrDI GCAATG 2 cut(s) 126, 333
BsrI ACTGG 3 cut(s) 584, 597, 799
BssECI CCNNGG 2 cut(s) 99, 357
BssMI GATC 1 cut(s) 77
BssNI GRCGYC 1 cut(s) 403
BssT1I CCWWGG 2 cut(s) 99, 357
Bst4CI ACNGT 1 cut(s) 628
BstACI GRCGYC 1 cut(s) 403
BstC8I GCNNGC 4 cut(s) 53, 532, 732, 779
BstDEI CTNAG 4 cut(s) 40, 315, 487, 552
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 4 cut(s) 35, 367, 453, 572
BstKTI GATC 1 cut(s) 80
BstMBI GATC 1 cut(s) 77
BstMWI GCNNNNNNNGC 2 cut(s) 61, 536
BstSFI CTRYAG 2 cut(s) 81, 114
BstV1I GCAGC 2 cut(s) 531, 758
BstV2I GAAGAC 1 cut(s) 225
Bsu36I CCTNAGG 1 cut(s) 40
BsuRI GGCC 5 cut(s) 51, 248, 520, 697, 798
BtgI CCRYGG 1 cut(s) 357
BtsCI GGATG 4 cut(s) 35, 367, 453, 572
BtsI GCAGTG 2 cut(s) 484, 546
BtsIMutI CAGTG 5 cut(s) 24, 484, 546, 591, 612
Cac8I GCNNGC 4 cut(s) 53, 532, 732, 779
Cfr13I GGNCC 1 cut(s) 246
CseI GACGC 1 cut(s) 392
CviAII CATG 4 cut(s) 184, 283, 358, 514
DdeI CTNAG 4 cut(s) 40, 315, 487, 552
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
DraI TTTAAA 1 cut(s) 660
EaeI YGGCCR 3 cut(s) 49, 695, 796
Ecl136II GAGCTC 1 cut(s) 95
Eco130I CCWWGG 2 cut(s) 99, 357
Eco24I GRGCYC 2 cut(s) 97, 173
Eco53kI GAGCTC 1 cut(s) 95
Eco57I CTGAAG 2 cut(s) 198, 435
Eco81I CCTNAGG 1 cut(s) 40
EcoICRI GAGCTC 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 246
EcoT14I CCWWGG 2 cut(s) 99, 357
EcoT38I GRGCYC 2 cut(s) 97, 173
ErhI CCWWGG 2 cut(s) 99, 357
FaeI CATG 4 cut(s) 187, 286, 361, 517
FaiI YATR 8 cut(s) 144, 185, 279, 284, 339, 341, 359, 515
FaqI GGGAC 1 cut(s) 603
FatI CATG 4 cut(s) 183, 282, 357, 513
Fnu4HI GCNGC 3 cut(s) 545, 747, 799
FokI GGATG 4 cut(s) 22, 374, 460, 579
FriOI GRGCYC 2 cut(s) 97, 173
Fsp4HI GCNGC 3 cut(s) 545, 747, 799
FspBI CTAG 1 cut(s) 288
GluI GCNGC 3 cut(s) 545, 747, 799
HaeIII GGCC 5 cut(s) 51, 248, 520, 697, 798
HgaI GACGC 1 cut(s) 392
Hin1I GRCGYC 1 cut(s) 403
Hin1II CATG 4 cut(s) 187, 286, 361, 517
HinfI GANTC 5 cut(s) 263, 353, 554, 560, 599
HphI GGTGA 3 cut(s) 243, 266, 383
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 9 cut(s) 77, 165, 217, 262, 382, 398, 408, 553, 559
Hpy188III TCNNGA 3 cut(s) 90, 564, 607
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 2 cut(s) 173, 393
HpyCH4III ACNGT 1 cut(s) 628
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 7 cut(s) 12, 326, 343, 350, 547, 730, 746
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 536
HpyF3I CTNAG 4 cut(s) 40, 315, 487, 552
HpySE526I ACGT 1 cut(s) 292
Hsp92I GRCGYC 1 cut(s) 403
Hsp92II CATG 4 cut(s) 187, 286, 361, 517
Kzo9I GATC 1 cut(s) 77
LmnI GCTCC 3 cut(s) 100, 474, 711
Lsp1109I GCAGC 2 cut(s) 531, 758
LweI GCATC 2 cut(s) 695, 758
MaeI CTAG 1 cut(s) 288
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 5 cut(s) 109, 272, 433, 607, 622
MalI GATC 1 cut(s) 79
MboI GATC 1 cut(s) 77
MboII GAAGA 1 cut(s) 230
MfeI CAATTG 1 cut(s) 308
MhlI GDGCHC 3 cut(s) 97, 128, 173
MlsI TGGCCA 2 cut(s) 51, 697
MluCI AATT 2 cut(s) 58, 308
MluNI TGGCCA 2 cut(s) 51, 697
MlyI GAGTC 3 cut(s) 347, 563, 608
Mox20I TGGCCA 2 cut(s) 51, 697
MscI TGGCCA 2 cut(s) 51, 697
MseI TTAA 2 cut(s) 452, 659
MslI CAYNNNNRTG 1 cut(s) 188
Msp20I TGGCCA 2 cut(s) 51, 697
MspA1I CMGCKG 1 cut(s) 801
MunI CAATTG 1 cut(s) 308
MwoI GCNNNNNNNGC 2 cut(s) 61, 536
NcoI CCATGG 1 cut(s) 357
NdeII GATC 1 cut(s) 77
NlaIII CATG 4 cut(s) 187, 286, 361, 517
NmeAIII GCCGAG 1 cut(s) 560
NmuCI GTSAC 5 cut(s) 109, 272, 433, 607, 622
PfeI GAWTC 2 cut(s) 263, 560
PflMI CCANNNNNTGG 1 cut(s) 794
PkrI GCNGC 3 cut(s) 546, 748, 800
PleI GAGTC 3 cut(s) 347, 562, 607
PpsI GAGTC 3 cut(s) 347, 562, 607
Psp124BI GAGCTC 1 cut(s) 97
PspPI GGNCC 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 188
SacI GAGCTC 1 cut(s) 97
SaqAI TTAA 2 cut(s) 452, 659
SatI GCNGC 3 cut(s) 545, 747, 799
Sau3AI GATC 1 cut(s) 77
Sau96I GGNCC 1 cut(s) 246
SchI GAGTC 3 cut(s) 347, 563, 608
SduI GDGCHC 3 cut(s) 97, 128, 173
SetI ASST 9 cut(s) 46, 88, 97, 111, 157, 295, 710, 716, 736
SfaNI GCATC 2 cut(s) 695, 758
SfcI CTRYAG 2 cut(s) 81, 114
SmiMI CAYNNNNRTG 1 cut(s) 188
Sse9I AATT 2 cut(s) 58, 308
SsiI CCGC 1 cut(s) 799
SspMI CTAG 1 cut(s) 288
SstI GAGCTC 1 cut(s) 97
StyI CCWWGG 2 cut(s) 99, 357
TaaI ACNGT 1 cut(s) 628
TaiI ACGT 1 cut(s) 295
TasI AATT 2 cut(s) 58, 308
TauI GCSGC 1 cut(s) 801
TfiI GAWTC 2 cut(s) 263, 560
Tru1I TTAA 2 cut(s) 452, 659
Tru9I TTAA 2 cut(s) 452, 659
TscAI CASTG 5 cut(s) 31, 484, 546, 591, 619
TseFI GTSAC 5 cut(s) 109, 272, 433, 607, 622
TseI GCWGC 2 cut(s) 544, 746
Tsp45I GTSAC 5 cut(s) 109, 272, 433, 607, 622
TspDTI ATGAA 1 cut(s) 633
TspRI CASTG 5 cut(s) 31, 484, 546, 591, 619
Van91I CCANNNNNTGG 1 cut(s) 794
XcmI CCANNNNNNNNNTGG 1 cut(s) 705
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.