Rroxscaffold_3G00276030

Peptidoglycan-binding LysM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0013680
Physical Location & Seq
Forward (+)
67323590 .. 67326036
2447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00276030.1

Sequence Viewer

Length: 1059 bp
ATGTCGCCTTCAAATACAGGGTCGGTGGGCAACGGAGGAGGAGGAGGAGGAGGAGGAGGAAAGAATTACATAGAGCACCAAGTTTCCAAGATGGACACTCTCGCCGGCGTTGCTATCAAATATGGCGTTGAGGTTGCTGACATTAAAAGGATGAATGGCTTTGCTACAGATCTTCAGATGTTTGCTTTGAAGACCTTGAAAATACCTTTACCGGGAAGACATTCACCATCTACTGCTTCTCTTTCTCCACAAGAAAACAACACTGAAAAGTCATCCTCAGGTCTTGGCCAGCCTAATTTGCTACCACCATTCCGATCTGTAGGTTCAAGAGCTCCCACGGATAAGGTCACTACAGCAATGAGCACTTTACAGAAATACTATGGTCTAAAACCTCCAAATCGGAGGGGCTCAACTGAAGGCATGGAGATGGCTGTTTACAGAAGTAGAAGTTCAGAAGACTTTGATGATGGTTTGTTGTCAAAGGCCTCACCATTTTCTGATTCTCAAAGTCACCATAACATGACTAGACGTTTTTCTGTTGGTCAATTGACTGAGAATGGTGCAATGGCTGATTATATGCACTTTGCAGACTCCATGGATGGGGAGGGTGAGAAATCTGATGATAAGTCAGTCCGAAGGCGTCAGAAAACTGAAGTTGAAAATGGGAATGTCACACCAGAGAGGATGTTAAAAGGGGAAAAAAGTGGTGGGAGCAGTGGTTTCTCAGCCTCAACAGGAAAGGGTTTAGCCATGAGGCCGAAATCAGCAAGCCGAGCAGTGCTGCAATCTGAGTCAGATTCAGGATGGTTGAACTCTATCCCAGTGGGACTGGGAGAGTCTATCGTGACCACTGATGAAGTGACTGTTGTTCGCAAATCATCAAGCACACCAAGTTTAAAAGAGGAGGAAAATAACAGCACAGCATCAGTTTGGCCAACTTCAAGGTGGAGCTTGAAAACAGACTTGCAAGCTCTTTCAAATGCAGCATCTATTACCAGACCAATCTTTGATGGCTTGCCGAAACCAATAACTGGCCGCTGGAAAACTGCCCTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

352

Amino Acids

37.59

Weight (kDa)

9.2

Isoelectric Point (pI)

59.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013680)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g18360 FvH4_5g18360
malus_domestica MD06G1239300.v1.1 MD14G1245200.v1.1
prunus_persica Prupe.5G243200_v2.0.a1
pyrus_communis pycom06g21490 pycom14g20620
rosa_chinensis RchiOBHm_Chr7g0177231
rosa_laevigata RLG00000005554
rosa_multiflora Rmu_sc0005310.1_g000015 Rmu_sc0024964.1_g000001
rosa_roxburghii Rroxscaffold_3G00276030
rosa_rugosa Rorug06G0404000
rosa_samantha Rh7AG004000 Rh7BG003800 Rh7CG003700 Rh7DG003700
rosa_wichuraiana Rw7G000320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1031
AciI CCGC 1 cut(s) 1036
AcoI YGGCCR 3 cut(s) 286, 932, 1033
AcuI CTGAAG 3 cut(s) 158, 435, 672
AcyI GRCGYC 1 cut(s) 640
AfiI CCNNNNNNNGG 3 cut(s) 212, 600, 1031
AgsI TTSAA 9 cut(s) 12, 190, 199, 327, 659, 811, 942, 955, 978
AluBI AGCT 3 cut(s) 332, 951, 971
AluI AGCT 3 cut(s) 332, 951, 971
Alw21I GWGCWC 3 cut(s) 78, 334, 365
AoxI GGCC 5 cut(s) 286, 483, 755, 932, 1033
ApeKI GCWGC 2 cut(s) 781, 983
ArsI GACNNNNNNTTYG 1 cut(s) 37
Asp700I GAANNNNTTC 1 cut(s) 220
AsuC2I CCSGG 1 cut(s) 213
AsuHPI GGTGA 4 cut(s) 216, 480, 503, 620
AxyI CCTNAGG 1 cut(s) 277
BalI TGGCCA 2 cut(s) 288, 934
BanII GRGCYC 2 cut(s) 334, 410
BbsI GAAGAC 3 cut(s) 197, 223, 462
Bbv12I GWGCWC 3 cut(s) 78, 334, 365
BbvI GCAGC 2 cut(s) 768, 995
BccI CCATC 7 cut(s) 85, 235, 421, 461, 593, 798, 1004
BcnI CCSGG 1 cut(s) 213
BfaI CTAG 1 cut(s) 525
BfmI CTRYAG 3 cut(s) 165, 318, 351
BglII AGATCT 1 cut(s) 169
BisI GCNGC 3 cut(s) 782, 984, 1036
BlsI GCNGC 3 cut(s) 783, 985, 1037
Bme1390I CCNGG 1 cut(s) 213
BmrFI CCNGG 1 cut(s) 213
BmrI ACTGGG 2 cut(s) 815, 839
BmsI GCATC 2 cut(s) 932, 995
BmuI ACTGGG 2 cut(s) 815, 839
BpiI GAAGAC 3 cut(s) 197, 223, 462
BpuMI CCSGG 1 cut(s) 213
BsaHI GRCGYC 1 cut(s) 640
BsaJI CCNNGG 2 cut(s) 336, 594
BsaXI ACNNNNNCTCC 2 cut(s) 703, 733
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 600, 1031
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 3 cut(s) 821, 834, 1036
Bse21I CCTNAGG 1 cut(s) 277
Bse3DI GCAATG 2 cut(s) 363, 570
BseDI CCNNGG 2 cut(s) 336, 594
BseGI GGATG 5 cut(s) 156, 272, 604, 690, 809
BseLI CCNNNNNNNGG 3 cut(s) 212, 600, 1031
BseMI GCAATG 2 cut(s) 363, 570
BseMII CTCAG 4 cut(s) 291, 543, 738, 780
BseNI ACTGG 3 cut(s) 821, 834, 1036
BseRI GAGGAG 8 cut(s) 51, 54, 57, 60, 63, 66, 69, 917
BseXI GCAGC 2 cut(s) 768, 995
BshFI GGCC 5 cut(s) 288, 485, 757, 934, 1035
BsiHKAI GWGCWC 3 cut(s) 78, 334, 365
BsiSI CCGG 2 cut(s) 105, 212
BslFI GGGAC 1 cut(s) 840
BslI CCNNNNNNNGG 3 cut(s) 212, 600, 1031
BsmFI GGGAC 1 cut(s) 840
BsnI GGCC 5 cut(s) 288, 485, 757, 934, 1035
Bsp1286I GDGCHC 4 cut(s) 78, 334, 365, 410
Bsp143I GATC 2 cut(s) 169, 314
Bsp19I CCATGG 1 cut(s) 594
BspACI CCGC 1 cut(s) 1036
BspANI GGCC 5 cut(s) 288, 485, 757, 934, 1035
BspCNI CTCAG 4 cut(s) 290, 544, 737, 781
BsrDI GCAATG 2 cut(s) 363, 570
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 3 cut(s) 821, 834, 1036
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 336, 594
BssMI GATC 2 cut(s) 169, 314
BssNI GRCGYC 1 cut(s) 640
BssT1I CCWWGG 1 cut(s) 594
Bst4CI ACNGT 1 cut(s) 865
BstACI GRCGYC 1 cut(s) 640
BstC8I GCNNGC 5 cut(s) 106, 290, 769, 969, 1016
BstDEI CTNAG 4 cut(s) 277, 552, 724, 789
BstDSI CCRYGG 2 cut(s) 336, 594
BstF5I GGATG 5 cut(s) 156, 272, 604, 690, 809
BstKTI GATC 2 cut(s) 172, 317
BstMBI GATC 2 cut(s) 169, 314
BstMWI GCNNNNNNNGC 3 cut(s) 110, 298, 773
BstSCI CCNGG 1 cut(s) 211
BstSFI CTRYAG 3 cut(s) 165, 318, 351
BstV1I GCAGC 2 cut(s) 768, 995
BstV2I GAAGAC 3 cut(s) 197, 223, 462
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
Bsu36I CCTNAGG 1 cut(s) 277
BsuRI GGCC 5 cut(s) 288, 485, 757, 934, 1035
BtgI CCRYGG 2 cut(s) 336, 594
BtsCI GGATG 5 cut(s) 156, 272, 604, 690, 809
BtsI GCAGTG 2 cut(s) 721, 783
BtsIMutI CAGTG 5 cut(s) 261, 721, 783, 828, 849
Cac8I GCNNGC 5 cut(s) 106, 290, 769, 969, 1016
Cfr10I RCCGGY 1 cut(s) 104
CseI GACGC 1 cut(s) 629
CviAII CATG 4 cut(s) 421, 520, 595, 751
DdeI CTNAG 4 cut(s) 277, 552, 724, 789
DpnI GATC 2 cut(s) 171, 316
DpnII GATC 2 cut(s) 169, 314
DraI TTTAAA 1 cut(s) 897
EaeI YGGCCR 3 cut(s) 286, 932, 1033
Ecl136II GAGCTC 1 cut(s) 332
Eco130I CCWWGG 1 cut(s) 594
Eco147I AGGCCT 1 cut(s) 485
Eco24I GRGCYC 2 cut(s) 334, 410
Eco53kI GAGCTC 1 cut(s) 332
Eco57I CTGAAG 3 cut(s) 158, 435, 672
Eco81I CCTNAGG 1 cut(s) 277
EcoICRI GAGCTC 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 594
EcoT38I GRGCYC 2 cut(s) 334, 410
ErhI CCWWGG 1 cut(s) 594
FaeI CATG 4 cut(s) 424, 523, 598, 754
FaqI GGGAC 1 cut(s) 840
FatI CATG 4 cut(s) 420, 519, 594, 750
Fnu4HI GCNGC 3 cut(s) 782, 984, 1036
FokI GGATG 5 cut(s) 163, 259, 611, 697, 816
FriOI GRGCYC 2 cut(s) 334, 410
Fsp4HI GCNGC 3 cut(s) 782, 984, 1036
FspBI CTAG 1 cut(s) 525
GluI GCNGC 3 cut(s) 782, 984, 1036
HaeIII GGCC 5 cut(s) 288, 485, 757, 934, 1035
HapII CCGG 2 cut(s) 105, 212
HgaI GACGC 1 cut(s) 629
Hin1I GRCGYC 1 cut(s) 640
Hin1II CATG 4 cut(s) 424, 523, 598, 754
HinfI GANTC 5 cut(s) 500, 590, 791, 797, 836
HpaII CCGG 2 cut(s) 105, 212
HphI GGTGA 4 cut(s) 216, 480, 503, 620
Hpy166II GTNNAC 1 cut(s) 436
Hpy188III TCNNGA 3 cut(s) 327, 801, 844
Hpy8I GTNNAC 1 cut(s) 436
HpyAV CCTTC 3 cut(s) 18, 410, 630
HpyCH4III ACNGT 1 cut(s) 865
HpyCH4IV ACGT 1 cut(s) 529
HpyCH4V TGCA 6 cut(s) 563, 580, 587, 784, 967, 983
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 298, 773
HpyF3I CTNAG 4 cut(s) 277, 552, 724, 789
HpySE526I ACGT 1 cut(s) 529
Hsp92I GRCGYC 1 cut(s) 640
Hsp92II CATG 4 cut(s) 424, 523, 598, 754
KroI GCCGGC 1 cut(s) 104
KroNI GCCGGC 1 cut(s) 106
Kzo9I GATC 2 cut(s) 169, 314
LmnI GCTCC 3 cut(s) 337, 711, 948
Lsp1109I GCAGC 2 cut(s) 768, 995
LweI GCATC 2 cut(s) 932, 995
MaeI CTAG 1 cut(s) 525
MaeII ACGT 1 cut(s) 529
MaeIII GTNAC 5 cut(s) 346, 509, 670, 844, 859
MalI GATC 2 cut(s) 171, 316
MboI GATC 2 cut(s) 169, 314
MboII GAAGA 4 cut(s) 164, 202, 228, 467
MfeI CAATTG 1 cut(s) 545
MflI RGATCY 1 cut(s) 169
MhlI GDGCHC 4 cut(s) 78, 334, 365, 410
MlsI TGGCCA 2 cut(s) 288, 934
MluCI AATT 3 cut(s) 64, 295, 545
MluNI TGGCCA 2 cut(s) 288, 934
MlyI GAGTC 3 cut(s) 584, 800, 845
Mox20I TGGCCA 2 cut(s) 288, 934
MreI CGCCGGCG 1 cut(s) 104
MroNI GCCGGC 1 cut(s) 104
MroXI GAANNNNTTC 1 cut(s) 220
MscI TGGCCA 2 cut(s) 288, 934
MseI TTAA 3 cut(s) 144, 689, 896
MslI CAYNNNNRTG 1 cut(s) 425
Msp20I TGGCCA 2 cut(s) 288, 934
MspA1I CMGCKG 1 cut(s) 1038
MspI CCGG 2 cut(s) 105, 212
MspR9I CCNGG 1 cut(s) 213
MunI CAATTG 1 cut(s) 545
MwoI GCNNNNNNNGC 3 cut(s) 110, 298, 773
NaeI GCCGGC 1 cut(s) 106
NciI CCSGG 1 cut(s) 213
NcoI CCATGG 1 cut(s) 594
NdeII GATC 2 cut(s) 169, 314
NgoMIV GCCGGC 1 cut(s) 104
NlaIII CATG 4 cut(s) 424, 523, 598, 754
NmeAIII GCCGAG 1 cut(s) 797
NmuCI GTSAC 5 cut(s) 346, 509, 670, 844, 859
PceI AGGCCT 1 cut(s) 485
PdiI GCCGGC 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 220
PfeI GAWTC 2 cut(s) 500, 797
PflMI CCANNNNNTGG 1 cut(s) 1031
PkrI GCNGC 3 cut(s) 783, 985, 1037
PleI GAGTC 3 cut(s) 584, 799, 844
PpsI GAGTC 3 cut(s) 584, 799, 844
Psp124BI GAGCTC 1 cut(s) 334
PsuI RGATCY 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 425
SacI GAGCTC 1 cut(s) 334
SaqAI TTAA 3 cut(s) 144, 689, 896
SatI GCNGC 3 cut(s) 782, 984, 1036
Sau3AI GATC 2 cut(s) 169, 314
SchI GAGTC 3 cut(s) 584, 800, 845
ScrFI CCNGG 1 cut(s) 213
SduI GDGCHC 4 cut(s) 78, 334, 365, 410
SfaNI GCATC 2 cut(s) 932, 995
SfcI CTRYAG 3 cut(s) 165, 318, 351
SgrAI CRCCGGYG 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 425
Sse9I AATT 3 cut(s) 64, 295, 545
SseBI AGGCCT 1 cut(s) 485
SsiI CCGC 1 cut(s) 1036
SspMI CTAG 1 cut(s) 525
SstI GAGCTC 1 cut(s) 334
StuI AGGCCT 1 cut(s) 485
StyD4I CCNGG 1 cut(s) 211
StyI CCWWGG 1 cut(s) 594
TaaI ACNGT 1 cut(s) 865
TaiI ACGT 1 cut(s) 532
TasI AATT 3 cut(s) 64, 295, 545
TauI GCSGC 1 cut(s) 1038
TfiI GAWTC 2 cut(s) 500, 797
Tru1I TTAA 3 cut(s) 144, 689, 896
Tru9I TTAA 3 cut(s) 144, 689, 896
TscAI CASTG 5 cut(s) 268, 721, 783, 828, 856
TseFI GTSAC 5 cut(s) 346, 509, 670, 844, 859
TseI GCWGC 2 cut(s) 781, 983
Tsp45I GTSAC 5 cut(s) 346, 509, 670, 844, 859
TspDTI ATGAA 2 cut(s) 167, 870
TspGWI ACGGA 2 cut(s) 48, 353
TspRI CASTG 5 cut(s) 268, 721, 783, 828, 856
Van91I CCANNNNNTGG 1 cut(s) 1031
XcmI CCANNNNNNNNNTGG 1 cut(s) 942
XmnI GAANNNNTTC 1 cut(s) 220
XspI CTAG 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.